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Search of human proteins with 239742799
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
(647 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 1338 0.0
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 1337 0.0
gi|48762934 alpha 2 type I collagen [Homo sapiens] 61 4e-09
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 60 6e-09
gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo sapi... 60 6e-09
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 58 3e-08
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 58 3e-08
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 57 7e-08
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens] 54 3e-07
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 54 3e-07
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 54 3e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 54 4e-07
gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo ... 54 4e-07
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 53 8e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 53 1e-06
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 52 1e-06
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 52 2e-06
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 51 3e-06
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 51 3e-06
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 51 3e-06
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 51 3e-06
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 51 3e-06
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 51 3e-06
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 51 3e-06
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 51 3e-06
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens] 51 3e-06
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 51 3e-06
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 51 3e-06
gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens] 51 3e-06
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 51 4e-06
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 1338 bits (3462), Expect = 0.0
Identities = 647/647 (100%), Positives = 647/647 (100%)
Query: 1 MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV 60
MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV
Sbjct: 1 MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV 60
Query: 61 GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF 120
GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF
Sbjct: 61 GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF 120
Query: 121 PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA 180
PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA
Sbjct: 121 PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA 180
Query: 181 LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA 240
LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA
Sbjct: 181 LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA 240
Query: 241 AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG 300
AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG
Sbjct: 241 AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG 300
Query: 301 AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR 360
AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR
Sbjct: 301 AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR 360
Query: 361 TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420
TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP
Sbjct: 361 TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420
Query: 421 GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR 480
GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR
Sbjct: 421 GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR 480
Query: 481 GCLRSARSSPHARPLGSSRSVRLLRSAAGKGPSLDSREVRVLIERGCQWWFLSRNGVDYT 540
GCLRSARSSPHARPLGSSRSVRLLRSAAGKGPSLDSREVRVLIERGCQWWFLSRNGVDYT
Sbjct: 481 GCLRSARSSPHARPLGSSRSVRLLRSAAGKGPSLDSREVRVLIERGCQWWFLSRNGVDYT 540
Query: 541 TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN 600
TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN
Sbjct: 541 TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN 600
Query: 601 FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS 647
FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS
Sbjct: 601 FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS 647
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 1337 bits (3459), Expect = 0.0
Identities = 646/647 (99%), Positives = 647/647 (100%)
Query: 1 MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV 60
MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV
Sbjct: 1 MTEKGWELSEGRKQEALLESSSSKQLAVFGFVVFPNHECLRRGLRKVAVGGSGDLFPSIV 60
Query: 61 GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF 120
GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF
Sbjct: 61 GRGPVCSGQCALLLLLRVASVEVVDVFLTVHEVLFRLPSVVLAVIAFPPNQILCLPFFIF 120
Query: 121 PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA 180
PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA
Sbjct: 121 PFVNNPFNLYLVQLLGSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA 180
Query: 181 LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA 240
LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA
Sbjct: 181 LGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGA 240
Query: 241 AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG 300
AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG
Sbjct: 241 AACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGG 300
Query: 301 AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR 360
AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR
Sbjct: 301 AAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR 360
Query: 361 TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420
TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP
Sbjct: 361 TRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420
Query: 421 GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR 480
GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR
Sbjct: 421 GGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR 480
Query: 481 GCLRSARSSPHARPLGSSRSVRLLRSAAGKGPSLDSREVRVLIERGCQWWFLSRNGVDYT 540
GCLRSARSSPHARPLGSSRSVRLLRSAAG+GPSLDSREVRVLIERGCQWWFLSRNGVDYT
Sbjct: 481 GCLRSARSSPHARPLGSSRSVRLLRSAAGRGPSLDSREVRVLIERGCQWWFLSRNGVDYT 540
Query: 541 TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN 600
TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN
Sbjct: 541 TGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRN 600
Query: 601 FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS 647
FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS
Sbjct: 601 FPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSRSSS 647
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 60.8 bits (146), Expect = 4e-09
Identities = 106/410 (25%), Positives = 134/410 (32%), Gaps = 81/410 (19%)
Query: 174 APAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGA 233
AP A G+D + G GP G P P A P G +
Sbjct: 227 APGPAGARGSDGSVGPVGPAGPIGSAG--------PPGFPGAPGPKGEIG--------AV 270
Query: 234 GRAGAGAAACGRRGRIAAP-LSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFS 292
G AG A G RG + P LSG V P P + A A LP G +
Sbjct: 271 GNAGPAGPA-GPRGEVGLPGLSGPVG------PPGNPGANGLTGAKG---AAGLP--GVA 318
Query: 293 GRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGC 352
G P G RG G A G ARG +P + G ++ + G
Sbjct: 319 GAP----GLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGP 374
Query: 353 AHQDGQRRTRDGAGNHASE-PARVWSPPPRRQRPRRLPRASLQEEPKRR----PPCAR-- 405
+ ++G+R AG+ P + P R P RA + P R P R
Sbjct: 375 SGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGP 434
Query: 406 ---------------------PSGAGPA-REGPAAWPGGAPTPPHARPTGRRQDPE---- 439
P GPA +EGP PG P P G R +P
Sbjct: 435 NGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGF 494
Query: 440 PGPRAPRGGPASSG--WHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSPHARPLGS 497
PGP+ P G P +G HAG A RG G+ + +G P G
Sbjct: 495 PGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGF 554
Query: 498 SRSVRLLRSAAGKGPSLDSREVRVLIERGCQWWFLSRNGVDYTTGPRSEQ 547
GPS + EV ERG F G+ GPR E+
Sbjct: 555 Q---------GLPGPSGPAGEVGKPGERGLHGEF----GLPGPAGPRGER 591
Score = 45.1 bits (105), Expect = 2e-04
Identities = 101/368 (27%), Positives = 114/368 (30%), Gaps = 58/368 (15%)
Query: 136 GSHGGRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA--LGTDEPLALRGQC 193
G +G G GQ R A + G P P AAG A G P RG
Sbjct: 721 GPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDG 780
Query: 194 GPAARRGCAQEQLRNAPWAPRAHS-------PAGRLALGLIAPRRGAGRAGAGAAACGRR 246
GP G R P P S PAG+ GL PR G G R
Sbjct: 781 GPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKE--GLRGPRGDQGPVG-------RT 831
Query: 247 GRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRG 306
G + G V + K S + A P G P+ G G P G G
Sbjct: 832 GEV-----GAVGPPGFAGEKGP----SGEAGTAGPPGTPGPQ-GLLGAP----GILGLPG 877
Query: 307 SRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRT----- 361
SRGE GV A G AR G + G A +DG
Sbjct: 878 SRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPG 937
Query: 362 RDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPARE-GPAA-- 418
RDG H E R P + P P G E GP+
Sbjct: 938 RDGQPGHKGE----------RGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPV 987
Query: 419 WPGGAPTPPH-ARPTGRRQDP-EPGPRAPRGGPASSGWHAG-----SAAGRGWDPGGGSR 471
P GA P + P G R D EPG + PRG P G H G AG D G
Sbjct: 988 GPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKG-HNGLQGLPGIAGHHGDQGAPGS 1046
Query: 472 ARRRAARG 479
RG
Sbjct: 1047 VGPAGPRG 1054
Score = 38.5 bits (88), Expect = 0.019
Identities = 92/368 (25%), Positives = 114/368 (30%), Gaps = 43/368 (11%)
Query: 134 LLGSHGGRRSCGREGQG--RGGRRRRAADTLFQLGPAWPALPAPAAGRA-----LGTDEP 186
L GS G R G +G+ G R A GPA P AGR +G
Sbjct: 398 LRGSPGSRGLPGADGRAGVMGPPGSRGAS-----GPAGVRGPNGDAGRPGEPGLMGPRGL 452
Query: 187 LALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLA----LGLIAPRRGAGRAGAG--- 239
G GPA + G L P PAG +G P+ G G
Sbjct: 453 PGSPGNIGPAGKEGPVG--LPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDK 510
Query: 240 --AAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRG 297
A G RG + Q P+ + P LP G SG P G
Sbjct: 511 GHAGLAGARGAPGPDGNNGAQGPP--GPQGVQGGKGEQGPPGPPGFQGLP--GPSG-PAG 565
Query: 298 RGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDG 357
G RG GE G RG P + A AG T G DG
Sbjct: 566 EVGKPGERGLHGEFGLPGPAGPRGERGPPGESGA------AGPTGPIGSRGPSGPPGPDG 619
Query: 358 QRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPA 417
+ G + S P + +P + ++ P R P R+G
Sbjct: 620 NKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGG----KGEKGEPGLRGEIGNPGRDGAR 675
Query: 418 AWPGGAPTPPHARPTGRRQDP----EPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRAR 473
PG P A TG R + GP PRG P G G A G+ G+ +
Sbjct: 676 GAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERG-EVGPAGPNGFAGPAGAAGQ 734
Query: 474 RRAARGRG 481
A RG
Sbjct: 735 PGAKGERG 742
Score = 31.2 bits (69), Expect = 3.1
Identities = 29/79 (36%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 392 SLQEEPKRRPPCARPSGAGPARE-GPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPA 450
SLQEE R+ P GP E GP PG PTG PGP P G P
Sbjct: 24 SLQEETVRKGPAG---DRGPRGERGPPGPPG---RDGEDGPTG-----PPGPPGPPGPPG 72
Query: 451 SSGWHAGSAAGRGWDPGGG 469
G A G+G G G
Sbjct: 73 LGGNFAAQYDGKGVGLGPG 91
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 60.1 bits (144), Expect = 6e-09
Identities = 113/411 (27%), Positives = 146/411 (35%), Gaps = 95/411 (23%)
Query: 254 SGVVQK--ASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
+G +Q+ +YL L +L S+P P AA GAA RGS
Sbjct: 5 AGALQRRTTTYLISLTLVKLESVPPPPPSPSAAA-------------AGAAGARGSETGD 51
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
P G RG A +P R W S A G A +
Sbjct: 52 P----GSPRG-AEEPGKKRHERLFHRQDALWISTSSAGTGGAEPPALSPA-------PAS 99
Query: 372 PARVWSPPPRRQR------PRRLPRASLQEEPK--------RRPPCARPSGAGPAREGPA 417
PAR SP P R+ P L +PK RRP + PS GP EG A
Sbjct: 100 PARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGGAPTSSRRPLLSSPSWGGPEPEGRA 159
Query: 418 AWPGGAP--TPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRR 475
GG P + PH RR P P AP+ P + +G+ AG G G GSR
Sbjct: 160 G--GGIPGSSSPHPGTGSRRLKVAPPPPAPK--PCKTVTTSGAKAGGG--KGAGSRLSWP 213
Query: 476 AARGRGCLRSARSSPHARPLGSSRSVRLLRSAAGKGPSLDSREVRVLIERGCQWWFLSRN 535
+ G+ ++ ++SS G+S S +AAG G S S V G +
Sbjct: 214 ESEGKPRVKGSKSSAGT---GASVSAAATAAAAGGGGSTASTSGGVGAGAGAR------- 263
Query: 536 GVDYTTGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDP--TPPDSRQLRS 593
G S ++G ++ L DL PG G P P PP
Sbjct: 264 ------GKLSPRKGKSKT-LDNSDLHPGPPA------------GSPPPLTLPPT------ 298
Query: 594 LWPSMRNFPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASLLRAPSR 644
PS T +S PPGPA P +PG+ R RA +R
Sbjct: 299 --PSPATAVTA-----ASAQPPGPA--PPITLEPPAPGLKRGREGGRASTR 340
>gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo
sapiens]
Length = 496
Score = 60.1 bits (144), Expect = 6e-09
Identities = 66/198 (33%), Positives = 77/198 (38%), Gaps = 24/198 (12%)
Query: 278 AARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPAC----GVGLARGTA-----PQPAS 328
AAR G L + RP+ GG GR GE P+ G A G+A P P
Sbjct: 8 AARRLGPCL--RAYQARPQVSGGEEGGRRGGGERPSSKPVRGAERALGSAQAQRHPPPLP 65
Query: 329 TWALAARPRAG--GTWTSRFEAQRG-CAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRP 385
T AL R G G R A R + G R R G G A RV P + P
Sbjct: 66 TCALQRVDRLGVAGAGGRRCRACRARTSVLPGLRAVRRGQGQAAG---RVCVAPDSPRLP 122
Query: 386 RRLPRASLQEEPKR-RPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRA 444
+PR L+ + R P A PS + PA+ PA G P P G R E P
Sbjct: 123 --VPRGDLKGRGREIRSPAAAPSRSSPAQTRPA----GRPQQPARLALGERSWQEGRPVC 176
Query: 445 PRGGPASSGWHAGSAAGR 462
R GP GW G A R
Sbjct: 177 TRFGPLRPGWQDGHAPSR 194
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 57.8 bits (138), Expect = 3e-08
Identities = 129/504 (25%), Positives = 161/504 (31%), Gaps = 73/504 (14%)
Query: 134 LLGSHGGRRSCGREG-QGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQ 192
+ G G R G +G +G G+ T GP P PA A G P G
Sbjct: 760 IAGPKGDRGDVGEKGPEGAPGKDGGRGLT----GPIGPPGPAGANGEKGEVGPP----GP 811
Query: 193 CGPAARRGCAQEQLRNAPWAPRAHS-PAGRLALGLIAPRRGAGRAG--AGAAACGRRGRI 249
G A RG E+ P P + P G A G + G AG A A G +G
Sbjct: 812 AGSAGARGAPGERGETGPPGPAGFAGPPG--ADGQPGAKGEQGEAGQKGDAGAPGPQGPS 869
Query: 250 AAP----LSGVVQKASYLRPKNLPRLLSMPSAAAR---PCGAALPRSGFSGRPRGRGGAA 302
AP +GV + P P AA R P P P G+ G
Sbjct: 870 GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPK 929
Query: 303 AGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWT---SRFEAQRGCAHQDGQR 359
RG G G +G A P +G QRG GQR
Sbjct: 930 GARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR 989
Query: 360 RTRD--GAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPA 417
R G + EP + +P R PP P G P GPA
Sbjct: 990 GERGFPGLPGPSGEPGKQGAPGASGDRG---------------PP--GPVGP-PGLTGPA 1031
Query: 418 AWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAA 477
PG +P P GR D G + RG + G A A G PG ++
Sbjct: 1032 GEPGREGSPGADGPPGR--DGAAGVKGDRGETGAVG--APGAPGPPGSPGPAGPTGKQGD 1087
Query: 478 RGRGCLRSARSSPHARPLGSSRSVRLLRSAAGKGPSLDSREVRVLIERGCQWW--FLSRN 535
RG + P+G S +GP D E ERG + F
Sbjct: 1088 RGEAGAQG--------PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1139
Query: 536 GVDYTTGPRSEQ--RGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRS 593
G+ GP +Q G A PR PG + + G+P P P
Sbjct: 1140 GLPGPPGPSGDQGASGPAGPSGPRGP--PG----PVGPSGKDGANGIPGPIGPPG----- 1188
Query: 594 LWPSMRNFPTGHCRGISSPSPPGP 617
P R+ TG +P PPGP
Sbjct: 1189 --PRGRSGETGPAGPPGNPGPPGP 1210
Score = 51.6 bits (122), Expect = 2e-06
Identities = 117/435 (26%), Positives = 142/435 (32%), Gaps = 77/435 (17%)
Query: 136 GSHGGRRSCGREGQ-GRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG 194
G G R + G G G G R P P P P+ G D P RG G
Sbjct: 882 GPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS-----GKDGPKGARGDSG 936
Query: 195 PAARRGCAQEQLRNAP----WAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIA 250
P R G Q P P P+G A G P+ AG+ G G+RG
Sbjct: 937 PPGRAGEPGLQGPAGPPGEKGEPGDDGPSG--AEGPPGPQGLAGQRGI-VGLPGQRGERG 993
Query: 251 AP-LSGVVQKASYLRPKNLPRLLSMPSAAAR--------PCGAALP-----RSGFSGR-- 294
P L G P P P A+ P G P R G G
Sbjct: 994 FPGLPG---------PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADG 1044
Query: 295 PRGRGGAAAGRGSRGEHPACGVGLARGT--APQPAS-TWALAARPRAGGTWTSRFEAQRG 351
P GR GAA +G RGE A G A G +P PA T R AG G
Sbjct: 1045 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1104
Query: 352 CAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGP 411
G + R G A EP R LQ P P +GP
Sbjct: 1105 ARGIQGPQGPRGDKG-EAGEPG-------ERGLKGHRGFTGLQGLPGPPGPSGDQGASGP 1156
Query: 412 AREGPAAWPGGAPTP--------------PHARPTGRRQDPEPGPRAPRG--------GP 449
A GP+ P G P P P P R + E GP P G GP
Sbjct: 1157 A--GPSG-PRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP 1213
Query: 450 ASSGWHAGSAAGRG-WDPGGGSRARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAA 508
G + AG G + G RA + G LR + A + + +RS
Sbjct: 1214 PGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPE 1273
Query: 509 G--KGPSLDSREVRV 521
G K P+ R++++
Sbjct: 1274 GSRKNPARTCRDLKL 1288
Score = 48.1 bits (113), Expect = 2e-05
Identities = 93/342 (27%), Positives = 111/342 (32%), Gaps = 82/342 (23%)
Query: 167 PAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGL 226
P P + P R G P G G A + G A E R P A G L
Sbjct: 230 PGEPGVSGPMGPR--GPPGPPGKPGDDGEAGKPGKAGE--RGPPGPQGARGFPGTPGLPG 285
Query: 227 IAPRRG-AGRAGAG--AAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCG 283
+ RG G GA A A G +G +P G + P+ LP
Sbjct: 286 VKGHRGYPGLDGAKGEAGAPGVKGESGSP--GENGSPGPMGPRGLP-------------- 329
Query: 284 AALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWT 343
G GR G GAA RG+ G+ G G A P A A+ AG T
Sbjct: 330 ------GERGRT-GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 382
Query: 344 SRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRP-P 402
R +GA EP SP P A P P
Sbjct: 383 ----------------RGPEGAQGPRGEPGTPGSPGP----------AGASGNPGTDGIP 416
Query: 403 CARPSGAGPAREGPAAWPG--GAPTPPHAR----PTGRRQDP-------------EPGPR 443
A+ S P G +PG G P P A P G+ +P EPGP
Sbjct: 417 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPA 476
Query: 444 APRGGPASSGWHAGSAAGRGWDPGG----GSRARRRAARGRG 481
P+G P +G G RG +PGG G R A RG
Sbjct: 477 GPQGAPGPAG-EEGKRGARG-EPGGVGPIGPPGERGAPGNRG 516
Score = 42.0 bits (97), Expect = 0.002
Identities = 83/319 (26%), Positives = 103/319 (32%), Gaps = 35/319 (10%)
Query: 191 GQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLAL-GLIAPRRGAGRAGAGAAAC------ 243
G GP RG E R +P A P G G P+ +G AG A
Sbjct: 693 GLVGPRGERGFPGE--RGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 750
Query: 244 --GRRGR--IAAPLSG---VVQKASYLRP-KNLPRLLSMPSAAARPCGAALPRSGFSGR- 294
G RG IA P V +K P K+ R L+ P P GA +G G
Sbjct: 751 MPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGA----NGEKGEV 806
Query: 295 -PRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCA 353
P G G+A RG+ GE G G A P + A+ G G
Sbjct: 807 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 866
Query: 354 HQDGQRRTRDGAGNHASEPAR-VWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPA 412
G + G + AR PP P R PP + + P
Sbjct: 867 GPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG--------PPGSNGNPGPPG 918
Query: 413 REGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSA-AGRGWDPGGGSR 471
GP+ G + P GR EPG + P G P G +G PG
Sbjct: 919 PPGPSGKDGPKGARGDSGPPGRA--GEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 976
Query: 472 ARRRAARGRGCLRSARSSP 490
A +R G R R P
Sbjct: 977 AGQRGIVGLPGQRGERGFP 995
Score = 36.2 bits (82), Expect = 0.097
Identities = 84/334 (25%), Positives = 108/334 (32%), Gaps = 42/334 (12%)
Query: 167 PAWPALPAPAAGRAL-GTDEPLALRGQCGPAARRGCAQEQLRNAPWAPR-AHSPAGRLAL 224
P P P R L G +G+ GP+ G E R P P+ A G +
Sbjct: 548 PGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPG---EDGRPGPPGPQGARGQPG--VM 602
Query: 225 GLIAPRRGAGRAGAGAAACGRRGRIAAP-LSGVVQKASYLRPKNLPRLLSMPSAAARPCG 283
G P+ G G G +G AP L G+ K P P+ G
Sbjct: 603 GFPGPKGANGEPGKA----GEKGLPGAPGLRGLPGKDGETGAAGPPGPAG-PAGERGEQG 657
Query: 284 AALPRSGFSGRPR-----GRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRA 338
A P SGF G P G GG +G GE A G+ RG P + A+
Sbjct: 658 APGP-SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQ 716
Query: 339 GGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPK 398
G G DG + AG P PP + P A +
Sbjct: 717 GP------RGLPGTPGTDGPKGASGPAG-----PPGAQGPPGLQGMPGERGAAGIAGPKG 765
Query: 399 RRPPCAR--PSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEP----GPRAPRGGPASS 452
R P GA P ++G G P A G + + P G RG P
Sbjct: 766 DRGDVGEKGPEGA-PGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 824
Query: 453 G-----WHAGSAAGRGWDPGGGSRARRRAARGRG 481
G AG A G D G++ + A +G
Sbjct: 825 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG 858
Score = 30.8 bits (68), Expect = 4.1
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 402 PCARPSGAGPARE-GPAAWPGGAPTPPHARPTGRRQDP-------EPGPRAPRGGPASSG 453
P P GPA E GP G P GR +P PGP P G P G
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG 177
Query: 454 WHAGSAAGRGWDPGGGSR 471
A AG + GG++
Sbjct: 178 NFAAQMAGGFDEKAGGAQ 195
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 57.8 bits (138), Expect = 3e-08
Identities = 129/504 (25%), Positives = 161/504 (31%), Gaps = 73/504 (14%)
Query: 134 LLGSHGGRRSCGREG-QGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQ 192
+ G G R G +G +G G+ T GP P PA A G P G
Sbjct: 691 IAGPKGDRGDVGEKGPEGAPGKDGGRGLT----GPIGPPGPAGANGEKGEVGPP----GP 742
Query: 193 CGPAARRGCAQEQLRNAPWAPRAHS-PAGRLALGLIAPRRGAGRAG--AGAAACGRRGRI 249
G A RG E+ P P + P G A G + G AG A A G +G
Sbjct: 743 AGSAGARGAPGERGETGPPGPAGFAGPPG--ADGQPGAKGEQGEAGQKGDAGAPGPQGPS 800
Query: 250 AAP----LSGVVQKASYLRPKNLPRLLSMPSAAAR---PCGAALPRSGFSGRPRGRGGAA 302
AP +GV + P P AA R P P P G+ G
Sbjct: 801 GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPK 860
Query: 303 AGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWT---SRFEAQRGCAHQDGQR 359
RG G G +G A P +G QRG GQR
Sbjct: 861 GARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR 920
Query: 360 RTRD--GAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPA 417
R G + EP + +P R PP P G P GPA
Sbjct: 921 GERGFPGLPGPSGEPGKQGAPGASGDRG---------------PP--GPVGP-PGLTGPA 962
Query: 418 AWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAA 477
PG +P P GR D G + RG + G A A G PG ++
Sbjct: 963 GEPGREGSPGADGPPGR--DGAAGVKGDRGETGAVG--APGAPGPPGSPGPAGPTGKQGD 1018
Query: 478 RGRGCLRSARSSPHARPLGSSRSVRLLRSAAGKGPSLDSREVRVLIERGCQWW--FLSRN 535
RG + P+G S +GP D E ERG + F
Sbjct: 1019 RGEAGAQG--------PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1070
Query: 536 GVDYTTGPRSEQ--RGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRS 593
G+ GP +Q G A PR PG + + G+P P P
Sbjct: 1071 GLPGPPGPSGDQGASGPAGPSGPRGP--PG----PVGPSGKDGANGIPGPIGPPG----- 1119
Query: 594 LWPSMRNFPTGHCRGISSPSPPGP 617
P R+ TG +P PPGP
Sbjct: 1120 --PRGRSGETGPAGPPGNPGPPGP 1141
Score = 51.6 bits (122), Expect = 2e-06
Identities = 117/435 (26%), Positives = 142/435 (32%), Gaps = 77/435 (17%)
Query: 136 GSHGGRRSCGREGQ-GRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG 194
G G R + G G G G R P P P P+ G D P RG G
Sbjct: 813 GPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS-----GKDGPKGARGDSG 867
Query: 195 PAARRGCAQEQLRNAP----WAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIA 250
P R G Q P P P+G A G P+ AG+ G G+RG
Sbjct: 868 PPGRAGEPGLQGPAGPPGEKGEPGDDGPSG--AEGPPGPQGLAGQRGI-VGLPGQRGERG 924
Query: 251 AP-LSGVVQKASYLRPKNLPRLLSMPSAAAR--------PCGAALP-----RSGFSGR-- 294
P L G P P P A+ P G P R G G
Sbjct: 925 FPGLPG---------PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADG 975
Query: 295 PRGRGGAAAGRGSRGEHPACGVGLARGT--APQPAS-TWALAARPRAGGTWTSRFEAQRG 351
P GR GAA +G RGE A G A G +P PA T R AG G
Sbjct: 976 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1035
Query: 352 CAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGP 411
G + R G A EP R LQ P P +GP
Sbjct: 1036 ARGIQGPQGPRGDKG-EAGEPG-------ERGLKGHRGFTGLQGLPGPPGPSGDQGASGP 1087
Query: 412 AREGPAAWPGGAPTP--------------PHARPTGRRQDPEPGPRAPRG--------GP 449
A GP+ P G P P P P R + E GP P G GP
Sbjct: 1088 A--GPSG-PRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP 1144
Query: 450 ASSGWHAGSAAGRG-WDPGGGSRARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAA 508
G + AG G + G RA + G LR + A + + +RS
Sbjct: 1145 PGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPE 1204
Query: 509 G--KGPSLDSREVRV 521
G K P+ R++++
Sbjct: 1205 GSRKNPARTCRDLKL 1219
Score = 48.1 bits (113), Expect = 2e-05
Identities = 93/342 (27%), Positives = 111/342 (32%), Gaps = 82/342 (23%)
Query: 167 PAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGL 226
P P + P R G P G G A + G A E R P A G L
Sbjct: 161 PGEPGVSGPMGPR--GPPGPPGKPGDDGEAGKPGKAGE--RGPPGPQGARGFPGTPGLPG 216
Query: 227 IAPRRG-AGRAGAG--AAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCG 283
+ RG G GA A A G +G +P G + P+ LP
Sbjct: 217 VKGHRGYPGLDGAKGEAGAPGVKGESGSP--GENGSPGPMGPRGLP-------------- 260
Query: 284 AALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWT 343
G GR G GAA RG+ G+ G G A P A A+ AG T
Sbjct: 261 ------GERGRT-GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 313
Query: 344 SRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRP-P 402
R +GA EP SP P A P P
Sbjct: 314 ----------------RGPEGAQGPRGEPGTPGSPGP----------AGASGNPGTDGIP 347
Query: 403 CARPSGAGPAREGPAAWPG--GAPTPPHAR----PTGRRQDP-------------EPGPR 443
A+ S P G +PG G P P A P G+ +P EPGP
Sbjct: 348 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPA 407
Query: 444 APRGGPASSGWHAGSAAGRGWDPGG----GSRARRRAARGRG 481
P+G P +G G RG +PGG G R A RG
Sbjct: 408 GPQGAPGPAG-EEGKRGARG-EPGGVGPIGPPGERGAPGNRG 447
Score = 42.0 bits (97), Expect = 0.002
Identities = 83/319 (26%), Positives = 103/319 (32%), Gaps = 35/319 (10%)
Query: 191 GQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLAL-GLIAPRRGAGRAGAGAAAC------ 243
G GP RG E R +P A P G G P+ +G AG A
Sbjct: 624 GLVGPRGERGFPGE--RGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 681
Query: 244 --GRRGR--IAAPLSG---VVQKASYLRP-KNLPRLLSMPSAAARPCGAALPRSGFSGR- 294
G RG IA P V +K P K+ R L+ P P GA +G G
Sbjct: 682 MPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGA----NGEKGEV 737
Query: 295 -PRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCA 353
P G G+A RG+ GE G G A P + A+ G G
Sbjct: 738 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 797
Query: 354 HQDGQRRTRDGAGNHASEPAR-VWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPA 412
G + G + AR PP P R PP + + P
Sbjct: 798 GPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG--------PPGSNGNPGPPG 849
Query: 413 REGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSA-AGRGWDPGGGSR 471
GP+ G + P GR EPG + P G P G +G PG
Sbjct: 850 PPGPSGKDGPKGARGDSGPPGRA--GEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 907
Query: 472 ARRRAARGRGCLRSARSSP 490
A +R G R R P
Sbjct: 908 AGQRGIVGLPGQRGERGFP 926
Score = 36.2 bits (82), Expect = 0.097
Identities = 84/334 (25%), Positives = 108/334 (32%), Gaps = 42/334 (12%)
Query: 167 PAWPALPAPAAGRAL-GTDEPLALRGQCGPAARRGCAQEQLRNAPWAPR-AHSPAGRLAL 224
P P P R L G +G+ GP+ G E R P P+ A G +
Sbjct: 479 PGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPG---EDGRPGPPGPQGARGQPG--VM 533
Query: 225 GLIAPRRGAGRAGAGAAACGRRGRIAAP-LSGVVQKASYLRPKNLPRLLSMPSAAARPCG 283
G P+ G G G +G AP L G+ K P P+ G
Sbjct: 534 GFPGPKGANGEPGKA----GEKGLPGAPGLRGLPGKDGETGAAGPPGPAG-PAGERGEQG 588
Query: 284 AALPRSGFSGRPR-----GRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRA 338
A P SGF G P G GG +G GE A G+ RG P + A+
Sbjct: 589 APGP-SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQ 647
Query: 339 GGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPK 398
G G DG + AG P PP + P A +
Sbjct: 648 GP------RGLPGTPGTDGPKGASGPAG-----PPGAQGPPGLQGMPGERGAAGIAGPKG 696
Query: 399 RRPPCAR--PSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEP----GPRAPRGGPASS 452
R P GA P ++G G P A G + + P G RG P
Sbjct: 697 DRGDVGEKGPEGA-PGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 755
Query: 453 G-----WHAGSAAGRGWDPGGGSRARRRAARGRG 481
G AG A G D G++ + A +G
Sbjct: 756 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG 789
Score = 30.8 bits (68), Expect = 4.1
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 402 PCARPSGAGPARE-GPAAWPGGAPTPPHARPTGRRQDP-------EPGPRAPRGGPASSG 453
P P GPA E GP G P GR +P PGP P G P G
Sbjct: 49 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG 108
Query: 454 WHAGSAAGRGWDPGGGSR 471
A AG + GG++
Sbjct: 109 NFAAQMAGGFDEKAGGAQ 126
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 56.6 bits (135), Expect = 7e-08
Identities = 57/177 (32%), Positives = 75/177 (42%), Gaps = 24/177 (13%)
Query: 344 SRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPC 403
SR ++ H+D R+T G+ S +R SP P S P+R
Sbjct: 272 SRSPSRLSPKHRDEGRKT----GSQRSSGSR--SPSPSG--------GSGWGSPQRNGGS 317
Query: 404 ARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRG 463
+ SGA R G A P P+ P R + P P A RG + S A S+ GRG
Sbjct: 318 GQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPA-RGKESPSPRSAPSSQGRG 376
Query: 464 WDPGGGSRARRRAARGRGCLRSARSSPHAR---------PLGSSRSVRLLRSAAGKG 511
GG+ RRR R R RS+ S+P R P GSSRS+ RS++ G
Sbjct: 377 GRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSG 433
Score = 53.1 bits (126), Expect = 8e-07
Identities = 72/282 (25%), Positives = 97/282 (34%), Gaps = 30/282 (10%)
Query: 214 RAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLS 273
R+ SP+G G +P+R G A GR G +P + +R K +
Sbjct: 298 RSPSPSGGSGWG--SPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDK---AAAA 352
Query: 274 MPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALA 333
P+ AR + PRS S + GRGG A A G G R + + + A
Sbjct: 353 APTPPARGKESPSPRSAPSSQ--GRGGRA----------AGGAGRRRRRRRRRRRSRSSA 400
Query: 334 ARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASL 393
+ PR G R RG + + R+ +G+ P P R RA
Sbjct: 401 SAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRA-- 458
Query: 394 QEEPKRRPPCARPSGAGPA------REGPAAWPGGAPTPPHARPTGRRQDPEPG-PRAPR 446
K RPP ARP+ P+ R GP PH R + P R+
Sbjct: 459 ----KERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAE 514
Query: 447 GGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARS 488
P S D G RAR A R +RS
Sbjct: 515 KRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRS 556
Score = 47.0 bits (110), Expect = 5e-05
Identities = 102/372 (27%), Positives = 130/372 (34%), Gaps = 63/372 (16%)
Query: 319 ARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQR------RTRDGAGNHA-SE 371
+R +P S W R G + + G AH + R RD A A +
Sbjct: 297 SRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTP 356
Query: 372 PARVWSPPPRRQRPRRLPR-------ASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAP 424
PAR P R P R A + +RR +R S + P R G P AP
Sbjct: 357 PARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRR-PRPAP 415
Query: 425 TPPHARPTGRRQ---DPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGR- 480
+R R + D G AP GP GS G G G G RA+ R R R
Sbjct: 416 PRGSSRSLSRARSSSDSGSGRGAPGPGP-----EPGSERGHG---GHGKRAKERPPRARP 467
Query: 481 -----------------GCLRSARSSPHARPLGSSRSVRLLRS-AAGKGPSLDSR--EVR 520
G S PH R SSRS RS +A K P SR +
Sbjct: 468 ASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPK 527
Query: 521 VLIERGCQWWFLSRNGVDYTTGPRSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGL 580
+ R +R+ T R R + R D R + RK+ +
Sbjct: 528 KPLSRDKDGEGRARHSEAEATRARRRSRSYSPIRKRRRDSPSFMEPRRITSA---RKRPI 584
Query: 581 P--DPTPPDSRQLRSLWPSMRNFPTGHCRGISSPSPPGPASGSPRQFLHVSPGILRAASL 638
P P+P S S S R+ H R SPS PG + GS H + R+ S
Sbjct: 585 PYYRPSPSSSSSCLSSDYSTRS----HSR---SPS-PGHSHGSYSSRSHGTRSRTRSPSR 636
Query: 639 LRAP---SRSSS 647
+P SRSSS
Sbjct: 637 TPSPSYHSRSSS 648
>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 54.3 bits (129), Expect = 3e-07
Identities = 61/192 (31%), Positives = 76/192 (39%), Gaps = 24/192 (12%)
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGC-----AHQDGQRRTRDGAG 366
P G A G A PA ARP G W +R A +H G + D
Sbjct: 60 PRPGTLRAPGNAESPAPR---RARPDLGRPWATRSAASPHSKMWLGSHLRGGEMSGDPHT 116
Query: 367 NHASEPARVWSPPPRRQRPRRLPRASLQEEPK--RRPPCARPSGAGPAREGPAAWPGGAP 424
+ + PA+ +P LP Q +P RP RP+ PA EGP GG P
Sbjct: 117 DLPAHPAQTTNPE------LELPADPAQPDPAPLSRPAPPRPAHQSPAEEGPRGAAGGGP 170
Query: 425 TPPHARPTGRRQDPEPGPR-APRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGC- 482
P P GR Q + GPR +PR P S+ S G D G +R+ A R
Sbjct: 171 RTP---PAGRTQG-QSGPRESPRASPGSAAPAMASVRGPARD--GATRSEPHATEIRTLE 224
Query: 483 LRSARSSPHARP 494
+SARS A P
Sbjct: 225 PQSARSCCLAAP 236
Score = 33.9 bits (76), Expect = 0.48
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 583 PTPPDSRQLRSLWPSMRNFPTGHCRGISSPSPPGP----ASGSPRQFLHVSPGILRAASL 638
P PP L S W ++ CR + +P+ PGP A P L PG LRA
Sbjct: 15 PCPP----LFSAWEALSKVEGSECRALPTPTAPGPSPRRAPEPPLLTLRPRPGTLRAPGN 70
Query: 639 LRAPS 643
+P+
Sbjct: 71 AESPA 75
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 54.3 bits (129), Expect = 3e-07
Identities = 105/378 (27%), Positives = 122/378 (32%), Gaps = 84/378 (22%)
Query: 142 RSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG---PAAR 198
R GR G G +R A L L P+A A G PL L GQ PA
Sbjct: 262 RHGGRAAAGLGSQRGAALAGLIYL---------PSAAAAAGRHCPLRLAGQAPRTQPACP 312
Query: 199 RGCAQEQLRNAPW---------------APRAHSPAGRLALGL-IAPRRGAGRAGAGAAA 242
+Q PW +PR + P LA GL ++P+ GA R G A
Sbjct: 313 AAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQS-LAEGLGVSPQAGA-RVGEAREA 370
Query: 243 CGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAA 302
R G + A A + R G+ GA
Sbjct: 371 VTTHERAHLDREGEAR------------------ARLGQAAAQMRREGW--------GAR 404
Query: 303 AGRGSRGEHPACGVGL----ARGTAPQPASTWALAARPRAGGTW--TSRFEAQRGCAHQD 356
A G RG CG G AR P A+ LA + RAG T RG
Sbjct: 405 AKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQ-RAGRARARTGSQVGSRGRGWGP 463
Query: 357 GQRRTRDGAGNHASEPARVWSPPPRRQRPRR-----LPRASLQEEPKRRPPCA--RPSGA 409
G R G P R W RP R LP + +R P A R
Sbjct: 464 GAGRVPSGGRRGVGNPER-WGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELG 522
Query: 410 GPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHA-----GSAAGRGW 464
G +GP A PP A P R + P P G P A SA
Sbjct: 523 GRVGKGPGA-------PPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLR 575
Query: 465 DPGGGS-RARRRAARGRG 481
DPGGGS R R R R G
Sbjct: 576 DPGGGSARIRSRPGRSGG 593
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 54.3 bits (129), Expect = 3e-07
Identities = 105/378 (27%), Positives = 122/378 (32%), Gaps = 84/378 (22%)
Query: 142 RSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG---PAAR 198
R GR G G +R A L L P+A A G PL L GQ PA
Sbjct: 262 RHGGRAAAGLGSQRGAALAGLIYL---------PSAAAAAGRHCPLRLAGQAPRTQPACP 312
Query: 199 RGCAQEQLRNAPW---------------APRAHSPAGRLALGL-IAPRRGAGRAGAGAAA 242
+Q PW +PR + P LA GL ++P+ GA R G A
Sbjct: 313 AAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQS-LAEGLGVSPQAGA-RVGEAREA 370
Query: 243 CGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAA 302
R G + A A + R G+ GA
Sbjct: 371 VTTHERAHLDREGEAR------------------ARLGQAAAQMRREGW--------GAR 404
Query: 303 AGRGSRGEHPACGVGL----ARGTAPQPASTWALAARPRAGGTW--TSRFEAQRGCAHQD 356
A G RG CG G AR P A+ LA + RAG T RG
Sbjct: 405 AKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQ-RAGRARARTGSQVGSRGRGWGP 463
Query: 357 GQRRTRDGAGNHASEPARVWSPPPRRQRPRR-----LPRASLQEEPKRRPPCA--RPSGA 409
G R G P R W RP R LP + +R P A R
Sbjct: 464 GAGRVPSGGRRGVGNPER-WGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELG 522
Query: 410 GPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHA-----GSAAGRGW 464
G +GP A PP A P R + P P G P A SA
Sbjct: 523 GRVGKGPGA-------PPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLR 575
Query: 465 DPGGGS-RARRRAARGRG 481
DPGGGS R R R R G
Sbjct: 576 DPGGGSARIRSRPGRSGG 593
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 53.9 bits (128), Expect = 4e-07
Identities = 95/358 (26%), Positives = 119/358 (33%), Gaps = 61/358 (17%)
Query: 166 GPAWPALP----APAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNA-PWAPRAHSPAG 220
G P P +P G + P +G GP RG A R+ P P P G
Sbjct: 89 GECCPVCPDGSESPTDQETTGVEGP---KGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPG 145
Query: 221 RLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLS-GVVQKASYLRPKNLPRLLSMPSAAA 279
P G G G G A LS G +K++ P S P
Sbjct: 146 --------PPGPPGPPGLG-------GNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLP 190
Query: 280 RPCGAALPRSGFSGRPR--GRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALA---- 333
P GA P+ GF G P G GA+ G RG G G A +P
Sbjct: 191 GPPGAPGPQ-GFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP 249
Query: 334 --ARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRA 391
AR G + RG + DG + AG + + P + PR LP
Sbjct: 250 QGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGE 309
Query: 392 SLQEEPKRRPPCARPSGA----------------GPAREGPAAWPGGAPTPPHARPTGRR 435
+ RP P+GA GPA GP +PG A P G R
Sbjct: 310 ------RGRPGAPGPAGARGNDGATGAAGPPGPTGPA--GPPGFPGAVGAKGEAGPQGPR 361
Query: 436 QDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSPHAR 493
GP+ RG P G AAG +PG + + A G + A P AR
Sbjct: 362 --GSEGPQGVRGEPGPPG--PAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGAR 415
Score = 50.1 bits (118), Expect = 6e-06
Identities = 126/488 (25%), Positives = 154/488 (31%), Gaps = 77/488 (15%)
Query: 175 PAAGRALGTDEPLALRGQCGPAARRGC-AQEQLRNAPWAPRAHSPAGRLA-LGLIAPRRG 232
P A G P RG GP G ++ +R PAG G P
Sbjct: 730 PGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGP 789
Query: 233 AGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFS 292
AG GA A G RG P A + P P P A P A G +
Sbjct: 790 AGPTGARGAP-GDRGEPGPP-----GPAGFAGP---PGADGQPGAKGEPGDAGA--KGDA 838
Query: 293 GRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRF---EAQ 349
G P G G A G G A G ARG+A P +T A R G S
Sbjct: 839 GPP-GPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGP 897
Query: 350 RGCAHQDGQRRTRDGAGNHASEPARVWSP-PPRRQRPRRLPRASLQEEPKRRPPCARPSG 408
G A ++G + R G A P V P PP + P A + P P P G
Sbjct: 898 PGPAGKEGGKGPR-GETGPAGRPGEVGPPGPPGPAGEKGSPGA---DGPAGAPGTPGPQG 953
Query: 409 AG--------PAREGPAAWPG--------GAPTPPHARPTGRRQDPEP-GPRAPRGGPAS 451
P + G +PG G P A +G R P P GP G P
Sbjct: 954 IAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA--SGERGPPGPMGPPGLAGPPGE 1011
Query: 452 SGWHAGSAA----GRGWDPGGGSRARRRAARGRGCLRSARSSP----------------H 491
SG A GR PG G A +P
Sbjct: 1012 SGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGP 1071
Query: 492 ARPLGSSRSVRLLRSAAGKGPSLDSREVRVLIERGCQWWFLSRNGVDYTTGPRSE--QRG 549
A P G V A +GP D E +RG + +G+ GP ++G
Sbjct: 1072 AGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK-GHRGFSGLQGPPGPPGSPGEQG 1130
Query: 550 LARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRNFPTGHCRGI 609
+ A P P + A P + GLP P P + R TG +
Sbjct: 1131 PSGASGPAGPRGPPGSAGA---PGKDGLNGLPGPIGPPGPRGR----------TGDAGPV 1177
Query: 610 SSPSPPGP 617
P PPGP
Sbjct: 1178 GPPGPPGP 1185
Score = 47.4 bits (111), Expect = 4e-05
Identities = 81/331 (24%), Positives = 99/331 (29%), Gaps = 47/331 (14%)
Query: 163 FQLGPAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRL 222
FQ P P P G P+ RG GP + G E P P P G
Sbjct: 201 FQGPPGEPGEP--------GASGPMGPRGPPGPPGKNGDDGEA--GKPGRPGERGPPG-- 248
Query: 223 ALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPC 282
P+ G G + R + L G A PK P A +
Sbjct: 249 ------PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG 302
Query: 283 GAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTW 342
LP G GRP G G A RG+ G A G G A P A+ A+ AG
Sbjct: 303 PRGLP--GERGRP-GAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG 359
Query: 343 TSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPP 402
E +G + G GA A P P + + R P
Sbjct: 360 PRGSEGPQGVRGEPGPPGPA-GAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPS 418
Query: 403 CARPSGAGPAREGPAAWPG-----------------GAPTPP----HARPTGRRQDPEP- 440
+ G P +G + PG G PP G R +P P
Sbjct: 419 GPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPT 478
Query: 441 ---GPRAPRGGPASSGWHAGSAAGRGWDPGG 468
GP RGGP S G+ P G
Sbjct: 479 GLPGPPGERGGPGSRGFPGADGVAGPKGPAG 509
Score = 43.1 bits (100), Expect = 8e-04
Identities = 82/323 (25%), Positives = 99/323 (30%), Gaps = 42/323 (13%)
Query: 180 ALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAG 239
A G P+ ++G GPA G + R P P G R G G
Sbjct: 447 AKGEPGPVGVQGPPGPAGEEG--KRGARGEPGPTGLPGPPGE-------------RGGPG 491
Query: 240 AAACGRRGRIAAPLSGVVQKASY--LRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRG 297
+ +A P ++ S PK P P A P L S S P G
Sbjct: 492 SRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG 551
Query: 298 RGGAAAGRGSRGEHPACGVGLARGTAPQ---PASTWALAARPRAGGTWTSRFEAQRGCAH 354
+ G G G G ARG A P A +AG G A
Sbjct: 552 KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG 611
Query: 355 QDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRAS--LQEEPKRRPPCARPSGAGPA 412
+DG+ + G PA P +R + P S Q P P P AG
Sbjct: 612 KDGEAGAQGPPG-----PA-----GPAGERGEQGPAGSPGFQGLP---GPAGPPGEAGKP 658
Query: 413 REGPAAWPGGAPTPPHAR-----PTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPG 467
E GAP P AR P R PGP PRG + G A G PG
Sbjct: 659 GEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPG--NDGAKGDAGAPG 716
Query: 468 GGSRARRRAARGRGCLRSARSSP 490
+G R A P
Sbjct: 717 APGSQGAPGLQGMPGERGAAGLP 739
Score = 41.6 bits (96), Expect = 0.002
Identities = 93/351 (26%), Positives = 114/351 (32%), Gaps = 71/351 (20%)
Query: 175 PAAGRALGTDEPLALRGQCGPAARRGCAQEQ----------LRNAPWAPRAHSPAGRLAL 224
P A G P RG GPA +G E + +P + P G+
Sbjct: 496 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGK--T 553
Query: 225 GLIAPRRGAGRAG--AGAAACGRRGRIAAP-LSGVVQKASYLRPKNLPRLLSMPSAAARP 281
G P GR G A G+ G + P G + + +P P A P
Sbjct: 554 GPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG----PPGAVGP 609
Query: 282 CGAALPRSGFSGR--PRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWA-------- 331
G + G +G P G G A RG +G + G G A P
Sbjct: 610 AG----KDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPG 665
Query: 332 -LAARPRAGGTWTSRFEAQRGCAHQDGQRRTR--------DGAGNHASEPARVWS--PPP 380
L A +G F +RG G R DGA A P S P
Sbjct: 666 DLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPG 725
Query: 381 RRQRPRRLPRASLQEEPKRRPPCARPSGA--GPARE------------GPAAWPG----G 422
+ P A L PK A P GA P ++ GPA PG
Sbjct: 726 LQGMPGERGAAGL-PGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGES 784
Query: 423 APTPPHARPTGRRQDP----EPGPRAPRG--GPASSGWHAGSAAGRGWDPG 467
P+ P A PTG R P EPGP P G GP + G A G D G
Sbjct: 785 GPSGP-AGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPG-AKGEPGDAG 833
Score = 41.2 bits (95), Expect = 0.003
Identities = 89/320 (27%), Positives = 103/320 (32%), Gaps = 44/320 (13%)
Query: 136 GSHGGRRSCGREGQGRGGRRRRA-ADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG 194
G G G+EG G+G R A ++GP P PA G G D P G G
Sbjct: 893 GPPGPPGPAGKEG-GKGPRGETGPAGRPGEVGPPGPPGPAGEKGSP-GADGPAGAPGTPG 950
Query: 195 P---AARRGCA----QEQLRNAPWAPRAHSPAGRLAL----------------GLIAPRR 231
P A +RG Q R P P G+ GL P
Sbjct: 951 PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPG 1010
Query: 232 GAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGF 291
+GR GA A G GR +P G P P P A P G A G
Sbjct: 1011 ESGREGAPGAE-GSPGRDGSP--GAKGDRGETGPAGPPGAPGAPGAPG-PVGPA----GK 1062
Query: 292 SGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRG 351
SG RG G A G G A G +G T R G S + G
Sbjct: 1063 SG-DRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPG 1121
Query: 352 CAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGP 411
G++ + AS PA PP P + L P R AGP
Sbjct: 1122 PPGSPGEQ-----GPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGP 1176
Query: 412 AREGPAAWPG--GAPTPPHA 429
GP PG G P PP A
Sbjct: 1177 V--GPPGPPGPPGPPGPPSA 1194
>gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo
sapiens]
Length = 245
Score = 53.9 bits (128), Expect = 4e-07
Identities = 72/220 (32%), Positives = 87/220 (39%), Gaps = 36/220 (16%)
Query: 280 RPCGAALPRSGFSGRPRGR--GGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPR 337
+P A+ S FS R GR G+A+ G+R + G Q AS AR
Sbjct: 10 KPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRTPGPDGQDASP---RAREE 66
Query: 338 AGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWS------PPPRRQRPRRLPRA 391
GG E + G +H R+ G H R + PP R RPR PR
Sbjct: 67 DGGR-----ERRGGLSHSKDCNAARNARGKHLRRTRRRRTLGRRCRPPAPRPRPR--PRR 119
Query: 392 SLQ-EEPKRRPPCARPSGAGPAREGPAAW---PGGAPTPPHARPTGRRQDPEPGP----R 443
L ++ R P ARP GP G + W PG P RPT Q P PGP R
Sbjct: 120 KLALDQAATRIPAARPRPPGPGGRG-SHWKIQPGVQRLP---RPTPSAQ-PRPGPPERRR 174
Query: 444 APRG----GPASSGWHAGSAAGRGWDPGGG-SRARRRAAR 478
A R G G +A R PGGG R+RR AR
Sbjct: 175 ASRPLIGCGRGGGGTWRRAADSRWRRPGGGFQRSRREKAR 214
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 53.1 bits (126), Expect = 8e-07
Identities = 111/422 (26%), Positives = 148/422 (35%), Gaps = 62/422 (14%)
Query: 140 GRRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-----LGTDEPLALRGQCG 194
G S GR G R A++ LG A P+ P RA P A G G
Sbjct: 142 GSSSYGRLGPSEP-RGIYASERPKSLGDASPSAPEVVGARAAVPRSFSAPYPTA-GGSAG 199
Query: 195 PAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLS 254
P A A+ + R P+ +P+ A+ + +PR GR + G GR PL
Sbjct: 200 PEACSS-AERRARAGPFL----TPSPLHAVAMRSPRP-CGRPPTDSPDAGGAGR---PLD 250
Query: 255 GVVQKASYLRPKNLPRLLSMPSAAARPCGA-ALPRSGFSGRPRGRGGAAAGRGSR----- 308
G + S L + R P + P GA PR S R R + + +R
Sbjct: 251 GYI---SALLRRRRRRGAGQPRTS--PGGADGGPRRQNSVRQRPPDASPSPGSARPAREP 305
Query: 309 -----GEHPACGVGLARG--------TAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQ 355
G HP L+R AP+PA+ A + P + +AQ Q
Sbjct: 306 SLERVGGHPTSPAALSRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRL-VKAQYIPGAQ 364
Query: 356 DGQRRTRDGAGNHASEP---ARVWSPPPRRQRPRRLPRASLQEEP--KRRPPCARPSGAG 410
R A P R P R+RPR R E +R P AR +
Sbjct: 365 AATRGLPGRAARRKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASRS 424
Query: 411 PAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGW------ 464
+ P+ P PT R++P P PR PR GPA + + + R W
Sbjct: 425 QSETSLLGRASAVPSGPPKYPTAEREEPRP-PR-PRRGPAPTLAAQAAGSCRRWRSTAEI 482
Query: 465 DPGGGSRARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAAGKGPSLDSREVRVLIE 524
D G R R RA R P P S+ RLL AG + + L
Sbjct: 483 DAADGRRVRPRAPAAR--------VPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGR 534
Query: 525 RG 526
RG
Sbjct: 535 RG 536
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 52.8 bits (125), Expect = 1e-06
Identities = 98/373 (26%), Positives = 121/373 (32%), Gaps = 64/373 (17%)
Query: 136 GSHGGRRSCGREG----QGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRG 191
GS GG S G+ G QG GR GP P+ P G +G P G
Sbjct: 540 GSPGGPGSDGKPGPPGSQGESGRP----------GPPGPSGPRGQPG-VMGFPGPKGNDG 588
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
G RG P P P G+ G P+ G G G G +G
Sbjct: 589 APGKNGERG--------GPGGPGPQGPPGKN--GETGPQGPPGPTGPG----GDKGDTGP 634
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPR--SGFSGRPRGRGGAAAGRGSRG 309
P +Q LP P +P G P+ +G G P G+G A A G RG
Sbjct: 635 PGPQGLQ--------GLPGTGGPPGENGKP-GEPGPKGDAGAPGAPGGKGDAGAP-GERG 684
Query: 310 EHPACGVGLARGTAPQPASTWALAAR-----PRAGGT-WTSRFEAQRGCAHQDGQRRTRD 363
G RG A P A P A GT +RG G + +
Sbjct: 685 PPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKG 744
Query: 364 GAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAG--PAREGPAAWPG 421
G ++ P + PR P +P GA P GP PG
Sbjct: 745 EPGGPGADGV------PGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPG 798
Query: 422 G----APTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAA 477
P P P Q+ EPG + RG P G G G PGG A
Sbjct: 799 ERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKG--EGGPPGVAGPPGGSGPAGPPGP 856
Query: 478 RGRGCLRSARSSP 490
+G ++ R SP
Sbjct: 857 QG---VKGERGSP 866
Score = 47.4 bits (111), Expect = 4e-05
Identities = 87/327 (26%), Positives = 110/327 (33%), Gaps = 37/327 (11%)
Query: 166 GPAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQEQLRNAPWAPRAHSPAGRL-AL 224
GP PA A G G P GQ G G + P AP AG A
Sbjct: 903 GPPGPAGNTGAPGSP-GVSGPKGDAGQPGEKGSPGA-----QGPPGAPGPLGIAGITGAR 956
Query: 225 GLIAPRRGAGRAGAGAAACGRRGRIAAP-LSGVVQKASYLRPKNLPRLLSMPSAAARPCG 283
GL P G G+ G +G P +G+ + P+ LP L R
Sbjct: 957 GLAGPPGMPGPRGSPGPQ-GVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRD-- 1013
Query: 284 AALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPR------ 337
G G P GR G+ G+G RGE+ + G A G P P A +
Sbjct: 1014 ---GNPGSDGLP-GRDGSPGGKGDRGENGSPGAPGAPGH-PGPPGPVGPAGKSGDRGESG 1068
Query: 338 -AGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEE 396
AG RG G R + G + + P P + Q+
Sbjct: 1069 PAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQG 1128
Query: 397 PKRRPPCARPSG-----AGPAREGPAAWPG--GAPTPPHAR-PTGRRQDP----EPGPRA 444
P A P G P ++G + PG G P P R G P +PGP
Sbjct: 1129 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1188
Query: 445 PRG--GPASSGWHAGSAAGRGWDPGGG 469
P G GP G A + AG G + GG
Sbjct: 1189 PPGAPGPCCGGVGAAAIAGIGGEKAGG 1215
Score = 40.8 bits (94), Expect = 0.004
Identities = 86/354 (24%), Positives = 107/354 (30%), Gaps = 47/354 (13%)
Query: 170 PALPAPAAGRAL-GTDEPLALRGQCGPAARRGCAQEQLRN-APWAPRAH----SPAGRLA 223
P PA + G P RG GPA RG A E R+ P P SP G +
Sbjct: 488 PGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547
Query: 224 LGLIAPRRGAGRAG-----AGAAACGRRGRIAAP----LSGVVQKASYLRPKNLPRLLSM 274
G P G +G + G+ G + P G K P
Sbjct: 548 DGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGP 607
Query: 275 PSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAA 334
P P G +G G +G +G G G +P A
Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGA 667
Query: 335 RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQ 394
GG + +RG G R GAG E + + PP P LQ
Sbjct: 668 PGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPP--GPPGAAGTPGLQ 725
Query: 395 EEPKRRPPCARPSGAG-------------PAREGPAAWPGGAPTPPHARPTGRRQDPE-- 439
P R P G P ++GP P G PP P G+ D
Sbjct: 726 GMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRG-PTGPIGPP--GPAGQPGDKGEG 782
Query: 440 -----PGPRAPRGGPASSG-----WHAG--SAAGRGWDPGGGSRARRRAARGRG 481
PG PRG P G AG A G+ +PGG +G G
Sbjct: 783 GAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEG 836
Score = 38.1 bits (87), Expect = 0.025
Identities = 92/373 (24%), Positives = 117/373 (31%), Gaps = 52/373 (13%)
Query: 145 GREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQ- 203
G+ G+ G R A + GP A P +G A G P ++G+ G G A
Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPA-GPPGPQGVKGERGSPGGPGAAGF 874
Query: 204 EQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAP-LSGVVQKASY 262
R P P ++ G P G+ G A G G +P +SG A
Sbjct: 875 PGARGLPGPPGSNGNPGPPG-----PSGSPGKDGPPGPA-GNTGAPGSPGVSGPKGDAGQ 928
Query: 263 LRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGT 322
K P P A P G A G +G RG G G RG GV +G
Sbjct: 929 PGEKGSPGAQGPPGAPG-PLGIA----GITGA-RGLAGPPGMPGPRGSPGPQGV---KGE 979
Query: 323 APQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRR 382
+ +P + R G G A + G RDG P R SP +
Sbjct: 980 SGKPGANGLSGERGPPG---PQGLPGLAGTAGEPG----RDGNPGSDGLPGRDGSPGGKG 1032
Query: 383 QRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQD-PEPG 441
R P G PG P P G+ D E G
Sbjct: 1033 DRGEN---------------------GSPGAPGAPGHPG---PPGPVGPAGKSGDRGESG 1068
Query: 442 PRAPRG--GPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSPHARPLGSSR 499
P P G GPA S G RG G R RG + + P G
Sbjct: 1069 PAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQG 1128
Query: 500 SVRLLRSAAGKGP 512
++ A +GP
Sbjct: 1129 AIGSPGPAGPRGP 1141
Score = 32.3 bits (72), Expect = 1.4
Identities = 89/374 (23%), Positives = 120/374 (32%), Gaps = 86/374 (22%)
Query: 275 PSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAA 334
PS P GA P P G+ G + G GE G +G A P
Sbjct: 211 PSGPPGPPGAIGPSG-----PAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGH 265
Query: 335 RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAG----NHASEPARVWSPPPRRQRPRRLPR 390
R F+ + G + G + G N A P P R RP
Sbjct: 266 RG---------FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGA 316
Query: 391 ASLQEEPKRRPPCARPSGAGPAREGPAAWPGG---------APTPPHARPTGRRQDPEP- 440
A + R +P GP G A +PG A +P G+R +P P
Sbjct: 317 AGARGNDGARGSDGQPGPPGPP--GTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQ 374
Query: 441 ---GPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSPHARPLGS 497
G + P G P +G PGG G L AR P P G+
Sbjct: 375 GHAGAQGPPGPPGING-----------SPGGKGEMGPAGIPGAPGLMGARGPP--GPAGA 421
Query: 498 SRSVRLLRSAAGKGPSLDSREVRVLIERGCQWWFLSRNGVDYTTGPRSE--QRGLARAPL 555
+ + LR AG+ +NG GPR E + G+ P
Sbjct: 422 NGAPG-LRGGAGEP---------------------GKNGAKGEPGPRGERGEAGIPGVPG 459
Query: 556 PR----EDLLPGHTCRALDVPHRWRKKGLP---DPTPPDSRQLRSLWPSMRNFPTGHCRG 608
+ +D PG A +P ++G P P P+ P + P G RG
Sbjct: 460 AKGEDGKDGSPGEP-GANGLPGAAGERGAPGFRGPAGPNG------IPGEKG-PAGE-RG 510
Query: 609 ISSPSPPGPASGSP 622
P+ P A+G P
Sbjct: 511 APGPAGPRGAAGEP 524
Score = 30.4 bits (67), Expect = 5.3
Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 13/89 (14%)
Query: 406 PSGAGPAREGPAAWPGGAPTPPHA----RPTGR-RQDPEPGPRAPRG--------GPASS 452
P GP E A P G P PP A P G+ + PG RG GPA
Sbjct: 197 PGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGI 256
Query: 453 GWHAGSAAGRGWDPGGGSRARRRAARGRG 481
G RG+D G + A +G
Sbjct: 257 PGFPGMKGHRGFDGRNGEKGETGAPGLKG 285
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 52.4 bits (124), Expect = 1e-06
Identities = 139/567 (24%), Positives = 179/567 (31%), Gaps = 110/567 (19%)
Query: 142 RSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCGPAARRGC 201
RS R +GR R R L P A AP + P RG+ G
Sbjct: 138 RSALRSQRGRAPRGRGRKHKTTPLPPPRLADVAPTPPKT-----PARKRGEEGTERMVQA 192
Query: 202 AQEQLRNA--PWAPRAHSPAGRLALGLIAPRRGAGRA-GAGAAACGRRGRIAAPLSGVVQ 258
E LR A P APR+ A PRR GR G A C R+ + VV
Sbjct: 193 LTELLRRAQAPQAPRSR------ACEPSTPRRSRGRPPGRPAGPCRRKQQAV-----VVA 241
Query: 259 KASYLRPKNLPRLLSMP---SAAARPC------GAALPRSGFSGRPRGRGGAAAGRG--- 306
+A+ PK P +P + C G PR G GRGG GRG
Sbjct: 242 EAAVTIPKPEPPPPVVPVKHQTGSWKCKEGPGPGPGTPRRGGQSSRGGRGGRGRGRGGGL 301
Query: 307 -------SRGEHPACG---VGLARGTAP-QPASTWALAARPRAGG------TWTSRFEAQ 349
SR + G +GL G Q +W + R G W + +
Sbjct: 302 PFVIKFVSRAKKVKMGQLSLGLESGQGQGQHEESWQDVPQRRVGSGQGGSPCWKKQEQKL 361
Query: 350 RGCAHQDGQRRTRDGAGNHASE--PARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPS 407
+ + +D G E A P ++ + P P PP PS
Sbjct: 362 DDEEEEKKEEEEKDKEGEEKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPS 421
Query: 408 GAGPAREGPAAWPGGAPTP---PHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGW 464
+ P P P +P P P P Q+ P P P A + RG
Sbjct: 422 TSPPPPLCPPPPPPVSPPPLPSPPPPPAQEEQEESPPPVVP----------ATCSRKRGR 471
Query: 465 DP-GGGSRARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAAGKGPSLDSREVR--- 520
P RA R AAR A P G+S +A G GP DS V
Sbjct: 472 PPLTPSQRAEREAAR-------------AGPEGTSPPTPTPSTATG-GPPEDSPTVAPKS 517
Query: 521 -------------VLIERGCQWWFLSRNGVDY--TTGPRSEQRGLARAPLPREDLLPGHT 565
V+ R + R +D P+ E + R P+ +P
Sbjct: 518 TTFLKNIRQFIMPVVSARSSRVIKTPRRFMDEDPPKPPKVEVSPVLRPPITTSPPVPQEP 577
Query: 566 CRALDVPHRWRKKGLPDPTPPDSRQL----RSLWPSM-RNFPTGHCRGISSPSPPGPASG 620
P P P P R + W S+ R P P+PP P +
Sbjct: 578 APVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSLTRELPP------PPPAPPPPPAP 631
Query: 621 SPRQFLHVSPGILRAASLLRAPSRSSS 647
SP S R LLRAP + S
Sbjct: 632 SPPPAPATSS---RRPLLLRAPQFTPS 655
Score = 39.7 bits (91), Expect = 0.009
Identities = 124/499 (24%), Positives = 162/499 (32%), Gaps = 133/499 (26%)
Query: 191 GQC-GPAARRGCAQEQLRNAPWAPR-AHSPAGRLALG------LIAPRRGAGRAGAGAAA 242
G C GP + RG P PR A GR G +A RRG G G G A
Sbjct: 8 GSCPGPGSARG-------RFPGRPRGAGGGGGRGGRGNGAERVRVALRRGGGATGPGGAE 60
Query: 243 CGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAA 302
G + + LR L R G R ++G PR + G
Sbjct: 61 PG-------------EDTALLRLLGLRR------------GLRRLRRLWAG-PRVQRGRG 94
Query: 303 AGRGSRGEHPACGVGLARGTAPQPASTWALAARPR----------AGGTWTSRFEAQRGC 352
GRG G G +RG P+ S+ + A + S +QRG
Sbjct: 95 RGRGR-------GWGPSRGCVPEEESSDGESDEEEFQGFHSDEDVAPSSLRSALRSQRGR 147
Query: 353 AHQDGQR----------RTRDGAGNHASEPAR------------VWSPPPRRQRPRRLPR 390
A + R R D A PAR + RR + + PR
Sbjct: 148 APRGRGRKHKTTPLPPPRLADVAPTPPKTPARKRGEEGTERMVQALTELLRRAQAPQAPR 207
Query: 391 ASLQEEPKRRPPCARPSG--AGPAR---------EGPAAWPGGAPTPPHA---RPTGR-- 434
+ E R RP G AGP R E P P PP TG
Sbjct: 208 SRACEPSTPRRSRGRPPGRPAGPCRRKQQAVVVAEAAVTIPKPEPPPPVVPVKHQTGSWK 267
Query: 435 -RQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGG--------SRARRRAARGRGCLRS 485
++ P PGP PR G SS G GRG GGG SRA ++ G+ L
Sbjct: 268 CKEGPGPGPGTPRRGGQSS---RGGRGGRGRGRGGGLPFVIKFVSRA-KKVKMGQLSLGL 323
Query: 486 ARSSPHARPLGSSRSVRLLRSAAGKG--PSLDSREVRVLIERGCQWWFLSRNGVDYTTGP 543
+ S + V R +G+G P +E ++ E + G
Sbjct: 324 ESGQGQGQHEESWQDVPQRRVGSGQGGSPCWKKQEQKLDDEEEEK----KEEEEKDKEGE 379
Query: 544 RSEQRGLARAPLPREDLLPGHTCRALDVPHRWRKKGLPDPTPPDSRQLRSLWPSMRNFPT 603
E+R +A E+++P +P P P PP L P + P
Sbjct: 380 EKEERAVA------EEMMPAAEKEEAKLPPPPLTPPAPSPPPP-------LPPPSTSPPP 426
Query: 604 GHCRGISSPSPPGPASGSP 622
C P PP P S P
Sbjct: 427 PLC-----PPPPPPVSPPP 440
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 52.0 bits (123), Expect = 2e-06
Identities = 85/345 (24%), Positives = 107/345 (31%), Gaps = 47/345 (13%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 366 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 412
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 413 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 452
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 453 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 505
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 506 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 565
Query: 372 PAR-VWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAG-PAREGPAAWPGGAPTPPHA 429
+ V P Q E R P P +G R GP PG P A
Sbjct: 566 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 625
Query: 430 RPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P G R +PG P G G H G RG GSR
Sbjct: 626 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 670
Score = 35.0 bits (79), Expect = 0.22
Identities = 63/229 (27%), Positives = 78/229 (34%), Gaps = 52/229 (22%)
Query: 272 LSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWA 331
+ MP P A L G PRG G RG G G+ G P P
Sbjct: 139 IGMPGRVGSPGDAGLSIIG----PRGPPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMG 193
Query: 332 LAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWS-------------- 377
L P G + Q+G Q G+ R+ +S PA + S
Sbjct: 194 LTGPPGQPGP-----QGQKGEKGQCGEYPHRECL---SSMPAALRSSQIIALKLLPLLNS 245
Query: 378 ----PPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHAR 430
PPP RR +AS+Q P P GP+ GP PG P
Sbjct: 246 VRLAPPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMG 294
Query: 431 PTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
P G PGP P+G P G+H G RG PG + + A G
Sbjct: 295 PPGL-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 336
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 366 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 412
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 413 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 452
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 453 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 505
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 506 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 565
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 566 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 625
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 626 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 684
Score = 35.0 bits (79), Expect = 0.22
Identities = 63/229 (27%), Positives = 78/229 (34%), Gaps = 52/229 (22%)
Query: 272 LSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWA 331
+ MP P A L G PRG G RG G G+ G P P
Sbjct: 139 IGMPGRVGSPGDAGLSIIG----PRGPPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMG 193
Query: 332 LAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWS-------------- 377
L P G + Q+G Q G+ R+ +S PA + S
Sbjct: 194 LTGPPGQPGP-----QGQKGEKGQCGEYPHRECL---SSMPAALRSSQIIALKLLPLLNS 245
Query: 378 ----PPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHAR 430
PPP RR +AS+Q P P GP+ GP PG P
Sbjct: 246 VRLAPPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMG 294
Query: 431 PTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
P G PGP P+G P G+H G RG PG + + A G
Sbjct: 295 PPGL-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 336
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 304 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 350
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 351 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 390
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 391 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 443
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 444 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 503
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 504 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 563
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 564 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 622
Score = 32.7 bits (73), Expect = 1.1
Identities = 44/173 (25%), Positives = 57/173 (32%), Gaps = 18/173 (10%)
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
P C A +P A + R G T F G DG + G
Sbjct: 115 PGCNCPPAPQGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDG-KPGHPGPKGDMGL 173
Query: 372 PARVWSPPPRRQRPRR-----LPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTP 426
P P+ Q+ + P Q + + P P GP+ GP PG P
Sbjct: 174 TGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPS--GPLGHPG---LP 228
Query: 427 PHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
P G PGP P+G P G+H G RG PG + + A G
Sbjct: 229 GPMGPPGL-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 274
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 306 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 352
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 353 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 392
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 393 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 445
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 446 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 505
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 506 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 565
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 566 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 624
Score = 30.4 bits (67), Expect = 5.3
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 394 QEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSG 453
Q + + P P GP+ GP PG P P G PGP P+G P G
Sbjct: 203 QSQASIQGPPGPPGPPGPS--GPLGHPG---LPGPMGPPGL-----PGPPGPKGDPGIQG 252
Query: 454 WHAGSAAGRGWDPGGGSRARRRAARG 479
+H G RG PG + + A G
Sbjct: 253 YH-GRKGERGM-PGMPGKHGAKGAPG 276
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 309 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 355
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 356 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 395
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 396 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 448
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 449 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 508
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 509 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 568
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 569 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 627
Score = 32.3 bits (72), Expect = 1.4
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 21/106 (19%)
Query: 377 SPPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTG 433
+PPP RR +AS+Q P P GP+ GP PG P P G
Sbjct: 192 APPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMGPPG 240
Query: 434 RRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
PGP P+G P G+H G RG PG + + A G
Sbjct: 241 L-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 279
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 313 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 359
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 360 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 399
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 400 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 452
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 453 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 512
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 513 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 572
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 573 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 631
Score = 32.0 bits (71), Expect = 1.8
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 17/107 (15%)
Query: 378 PPPRRQRPRR-----LPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPT 432
P P+ Q+ + P Q + + P P GP+ GP PG P P
Sbjct: 189 PGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPS--GPLGHPG---LPGPMGPP 243
Query: 433 GRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
G PGP P+G P G+H G RG PG + + A G
Sbjct: 244 GL-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 283
Score = 29.6 bits (65), Expect = 9.0
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 394 QEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSG 453
+E PK P C P PA +GP PG +P A + GPR P G P + G
Sbjct: 108 REAPKTSPGCNCP----PAFQGPTGRPGLPGSPGDAGLS------IIGPRGPPGQPGTRG 157
Query: 454 W 454
+
Sbjct: 158 F 158
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 325 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 371
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 372 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 411
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 412 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 464
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 465 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 524
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 525 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 584
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 585 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 643
Score = 33.5 bits (75), Expect = 0.63
Identities = 48/190 (25%), Positives = 63/190 (33%), Gaps = 25/190 (13%)
Query: 295 PRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAH 354
P GR G +G+ G G +P A + R G T F G
Sbjct: 126 PTGRPGLPGDKGAIGMPGRVG-------SPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIG 178
Query: 355 QDGQRRTRDGAGNHASEPARVWSPPPRRQRPRR-----LPRASLQEEPKRRPPCARPSGA 409
DG + G P P+ Q+ + P Q + + P P
Sbjct: 179 LDG-KPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPP 237
Query: 410 GPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGG 469
GP+ GP PG P P G PGP P+G P G+H G RG PG
Sbjct: 238 GPS--GPLGHPG---LPGPMGPPGL-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMP 285
Query: 470 SRARRRAARG 479
+ + A G
Sbjct: 286 GKHGAKGAPG 295
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 337 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 383
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 384 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 423
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 424 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 476
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 477 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 536
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 537 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 596
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 597 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 655
Score = 32.3 bits (72), Expect = 1.4
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 21/106 (19%)
Query: 377 SPPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTG 433
+PPP RR +AS+Q P P GP+ GP PG P P G
Sbjct: 220 APPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMGPPG 268
Query: 434 RRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
PGP P+G P G+H G RG PG + + A G
Sbjct: 269 L-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 307
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 344 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 390
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 391 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 430
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 431 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 483
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 484 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 543
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 544 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 603
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 604 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 662
Score = 35.0 bits (79), Expect = 0.22
Identities = 54/208 (25%), Positives = 70/208 (33%), Gaps = 32/208 (15%)
Query: 272 LSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWA 331
+ MP P A L G PRG G RG G G+ G P P
Sbjct: 139 IGMPGRVGSPGDAGLSIIG----PRGPPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMG 193
Query: 332 LAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRA 391
L P G + Q+G Q G+ R+ S P + + +
Sbjct: 194 LTGPPGQPGP-----QGQKGEKGQCGEYPHRECLS----------SMPAALRSSQIIALK 238
Query: 392 SLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPAS 451
Q + + P P GP+ GP PG P P G PGP P+G P
Sbjct: 239 GEQSQASIQGPPGPPGPPGPS--GPLGHPG---LPGPMGPPGL-----PGPPGPKGDPGI 288
Query: 452 SGWHAGSAAGRGWDPGGGSRARRRAARG 479
G+H G RG PG + + A G
Sbjct: 289 QGYH-GRKGERGM-PGMPGKHGAKGAPG 314
>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
Length = 698
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 347 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 393
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 394 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 433
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 434 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 486
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 487 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 546
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 547 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 606
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 607 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 665
Score = 35.0 bits (79), Expect = 0.22
Identities = 60/211 (28%), Positives = 74/211 (35%), Gaps = 35/211 (16%)
Query: 272 LSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWA 331
+ MP P A L G PRG G RG G G+ G P P
Sbjct: 139 IGMPGRVGSPGDAGLSIIG----PRGPPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMG 193
Query: 332 LAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPP---RRQRPRRL 388
L P G + Q+G Q G+ R ++ A PPP RR
Sbjct: 194 LTGPPGQPGP-----QGQKGEKGQCGEYPHRLLPLLNSVRLA----PPPVIKRRTFQGEQ 244
Query: 389 PRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGG 448
+AS+Q P P GP+ GP PG P P G PGP P+G
Sbjct: 245 SQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMGPPGL-----PGPPGPKGD 288
Query: 449 PASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
P G+H G RG PG + + A G
Sbjct: 289 PGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 317
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 349 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 395
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 396 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 435
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 436 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 488
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 489 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 548
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 549 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 608
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 609 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 667
Score = 32.3 bits (72), Expect = 1.4
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 21/106 (19%)
Query: 377 SPPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTG 433
+PPP RR +AS+Q P P GP+ GP PG P P G
Sbjct: 232 APPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMGPPG 280
Query: 434 RRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
PGP P+G P G+H G RG PG + + A G
Sbjct: 281 L-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 319
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 354 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 400
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 401 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 440
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 441 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 493
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 494 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 553
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 554 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 613
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 614 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 672
Score = 32.3 bits (72), Expect = 1.4
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 21/106 (19%)
Query: 377 SPPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTG 433
+PPP RR +AS+Q P P GP+ GP PG P P G
Sbjct: 237 APPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMGPPG 285
Query: 434 RRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
PGP P+G P G+H G RG PG + + A G
Sbjct: 286 L-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 324
Score = 29.6 bits (65), Expect = 9.0
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 394 QEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSG 453
+E PK P C P PA +GP PG +P A + GPR P G P + G
Sbjct: 108 REAPKTSPGCNCP----PAFQGPTGRPGLPGSPGDAGLS------IIGPRGPPGQPGTRG 157
Query: 454 W 454
+
Sbjct: 158 F 158
>gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens]
Length = 717
Score = 51.2 bits (121), Expect = 3e-06
Identities = 89/359 (24%), Positives = 111/359 (30%), Gaps = 61/359 (16%)
Query: 134 LLGSHGGRRSCGRE-GQGRGGRRRRAADTLFQLGPAWPALPAPAAGRA-LGTDEPLALRG 191
LLG G + G G GRG P P LP P + G D + G
Sbjct: 366 LLGQKGEKGDAGNSIGGGRGE-------------PGPPGLPGPPGPKGEAGVDGQVGPPG 412
Query: 192 QCGPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAA 251
Q G RG A EQ G P+ G G G G I
Sbjct: 413 QPGDKGERGAAGEQ-------------------GPDGPKGSKGEPGKGEMV-DYNGNINE 452
Query: 252 PLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEH 311
L ++ + + P LP + P A P + G G P G G +G RG+
Sbjct: 453 ALQ-EIRTLALMGPPGLPGQIGPPGAPGIP-----GQKGEIGLP-GPPGHDGEKGPRGKP 505
Query: 312 PACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE 371
G +G + G + + G A G++ GN +E
Sbjct: 506 GDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAE 565
Query: 372 ------PARVWSPPPRRQRPRRLPRASL---------QEEPKRRPPCARPSGAG-PAREG 415
P PP + P A L Q E R P P +G R G
Sbjct: 566 VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPG 625
Query: 416 PAAWPGGAPTPPHARPTGRR-QDPEPGPRAPRGGPASSGWHA--GSAAGRGWDPGGGSR 471
P PG P A P G R +PG P G G H G RG GSR
Sbjct: 626 PPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSR 684
Score = 35.0 bits (79), Expect = 0.22
Identities = 63/229 (27%), Positives = 78/229 (34%), Gaps = 52/229 (22%)
Query: 272 LSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWA 331
+ MP P A L G PRG G RG G G+ G P P
Sbjct: 139 IGMPGRVGSPGDAGLSIIG----PRGPPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMG 193
Query: 332 LAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWS-------------- 377
L P G + Q+G Q G+ R+ +S PA + S
Sbjct: 194 LTGPPGQPGP-----QGQKGEKGQCGEYPHRECL---SSMPAALRSSQIIALKLLPLLNS 245
Query: 378 ----PPP---RRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHAR 430
PPP RR +AS+Q P P GP+ GP PG P
Sbjct: 246 VRLAPPPVIKRRTFQGEQSQASIQGPP------GPPGPPGPS--GPLGHPG---LPGPMG 294
Query: 431 PTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARG 479
P G PGP P+G P G+H G RG PG + + A G
Sbjct: 295 PPGL-----PGPPGPKGDPGIQGYH-GRKGERGM-PGMPGKHGAKGAPG 336
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 50.8 bits (120), Expect = 4e-06
Identities = 109/412 (26%), Positives = 141/412 (34%), Gaps = 142/412 (34%)
Query: 141 RRSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRAL----GTDEPLALRGQCGPA 196
R + R G+ RGGRR++ P PAAG A G +P R + G
Sbjct: 208 REAKSRFGKTRGGRRKKHRR------------PKPAAGGAKSRRGGGKKPQKQRRR-GQK 254
Query: 197 ARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGV 256
A G ++ + G+ A A RRGA AG AA GR GR
Sbjct: 255 AATGGKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAKGRGGR-------- 306
Query: 257 VQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGR-PRGRG-----GAAAG--RGSR 308
PK+L G PR G G+ PR RG AAAG RG
Sbjct: 307 -------GPKSL--------------GGQNPRWGRGGKKPRRRGQKATKAAAAGTKRGGG 345
Query: 309 GEHPACGVGLA-------RGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRT 361
G+ A VG+ RG P+ A A+ R GG EA+R DG+++
Sbjct: 346 GQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKR---RGDGRKK- 401
Query: 362 RDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPG 421
PR Q PRR A++ PAA
Sbjct: 402 ------------------PRWQNPRRR-----------------------AQKAPAA--- 417
Query: 422 GAPTPPHARPTGRRQDPEPGPRAPRGG----PASSGWHAGSAAGRGWDPGGGSRARRRAA 477
PRGG P G A + G GGG + RRR
Sbjct: 418 ----------------------KPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQ 455
Query: 478 RGRGCLRSARSSPHARPLGSSRSVRLLRSAAG---KGPSLDSREVRVLIERG 526
+ R ++A + +R G + R SAAG +G L S + L RG
Sbjct: 456 KAR--QKAAEAGAESR--GDKKQGRQKASAAGTKSRGGGLKSHSGKNLWRRG 503
Score = 50.1 bits (118), Expect = 6e-06
Identities = 87/323 (26%), Positives = 123/323 (38%), Gaps = 65/323 (20%)
Query: 190 RGQCGPAA--RRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRG------AGRAGAGAA 241
R Q PAA R G +++ R P A ++ R G RRG A AGA +
Sbjct: 410 RAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESR 469
Query: 242 ACGRRGRIAAPLSGVVQKASYLRP---KNLPRLLSMPSAAARPCGAALPRSGFSGRPRGR 298
++GR A +G + L+ KNL R AA AA +S +PR +
Sbjct: 470 GDKKQGRQKASAAGTKSRGGGLKSHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQ 529
Query: 299 GGAAAGRGSR-----------------GEHPACGVGLARGTAPQPASTW---ALAARPRA 338
A AG SR H G +RG W A AA+ R
Sbjct: 530 KPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGGNKQSRGGGGNKPRQWGQTAAAAKTRG 589
Query: 339 GGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRRLPRASLQEEPK 398
GG + Q+ A G ++R G G + W RQ+ S +++P
Sbjct: 590 GGDKQPGW--QKAAA---GVTKSRSGDGGK-----KAW-----RQKAAGTGAKS-RKKPW 633
Query: 399 RRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGS 458
RR G A AW GA + R +G +Q PR + PA++G + +
Sbjct: 634 RR-------GQKDAAAAEKAWATGATS----RGSGGKQ-----PRWQK--PAAAGSESSA 675
Query: 459 AAGRGWDPGGGSRARRRAARGRG 481
AA G + + RRR A+ RG
Sbjct: 676 AAAVGQEAEARKKPRRRRAKSRG 698
Score = 46.6 bits (109), Expect = 7e-05
Identities = 108/423 (25%), Positives = 146/423 (34%), Gaps = 82/423 (19%)
Query: 140 GRRSC----GREGQGRG-GRRRRAADTLFQLGPAWPALPAPAAG-RALGTDEPLALRGQC 193
G R C GR G G G A PAL A AAG + LG+ + R +
Sbjct: 5 GHRQCNQAAGRAGPGAPLGAALARTPVELAAESAAPALSAAAAGVKILGSGDKKLRRQKA 64
Query: 194 GPAARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGR---AGAGAAACGRRGRIA 250
++ + Q + A A + A A RG G A AG + G RGR
Sbjct: 65 AAGGKKARLRGQ-KGAVAGKEARQHWQKAAGAGGAENRGGGEQKAAAAGTKSLGGRGRKP 123
Query: 251 APLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGE 310
QKA+ K PR + SAAA G G G++
Sbjct: 124 RRRG---QKAAATGSKK-PRWRAQKSAAA-------------------GSKNRGAGAQKA 160
Query: 311 HPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRR--------TR 362
A GV G PQ A+ A A+ R+G R RG + G++R TR
Sbjct: 161 AAAAGVKSQGGEKPQKAA--AAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGKTR 218
Query: 363 DGAGNHASEP---------ARVWSPPPRRQRPR----------RLPRASLQEEPKRRPPC 403
G P R P++QR R R+ ++ + K R
Sbjct: 219 GGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQG 278
Query: 404 ARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGG-----PASSGWHAGS 458
+ AG R G A A P A+ G R G + PR G P G A
Sbjct: 279 QNAALAGAKRRGAAT----AGEKPAAKGRGGRGPKSLGGQNPRWGRGGKKPRRRGQKATK 334
Query: 459 AAGRGWDPGGGSR----------ARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAA 508
AA G GGG + +++ RG+ R S+ A+ G + LR A
Sbjct: 335 AAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGG-DKKGLREAK 393
Query: 509 GKG 511
+G
Sbjct: 394 RRG 396
Score = 44.3 bits (103), Expect = 4e-04
Identities = 95/390 (24%), Positives = 136/390 (34%), Gaps = 58/390 (14%)
Query: 139 GGRRSCGREGQGRG--GRRRRAADTLFQLGPAWPALPAPAAG-RALGTDEPLALRGQCGP 195
GG + R+GQ G +RR A T G A G ++LG P RG P
Sbjct: 269 GGDKKLRRQGQNAALAGAKRRGAATA---GEKPAAKGRGGRGPKSLGGQNPRWGRGGKKP 325
Query: 196 AARRGCAQEQLRNAPWAPRAHSPAGRLALGLIAP-------RRGAGRAGAGAAACGRRGR 248
RRG ++ A A G+ ++ RRG A+A G + R
Sbjct: 326 R-RRG---QKATKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSR 381
Query: 249 IAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSR 308
G+ + + PR + P A+ AA PR G S +PR RG AA SR
Sbjct: 382 GGGDKKGLREAKRRGDGRKKPRWQN-PRRRAQKAPAAKPRGGGSKKPRRRGPKAA--KSR 438
Query: 309 GEHPACGVGLARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNH 368
G G G +P A + A SR + ++G G G
Sbjct: 439 GGKSRSGGG------KKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLK 492
Query: 369 ASEPARVWSPPPRRQRPRRLPRAS-----LQEEPKRRPPCARPS----GAGPAREGPAAW 419
+ +W + + A+ +++P+R+ P + G +R+ A
Sbjct: 493 SHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAV 552
Query: 420 PGGAPTPPHARPTGRRQDPEPGPRAPR-------------GGPASSGWH---AGSAAGRG 463
GA + G +Q G PR GG GW AG R
Sbjct: 553 AAGATSHGGG---GNKQSRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRS 609
Query: 464 WDPGGGSRARRRAARGRGCLRSARSSPHAR 493
D GG +A R+ A G G +R P R
Sbjct: 610 GD--GGKKAWRQKAAGTGA--KSRKKPWRR 635
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,210,498
Number of Sequences: 37866
Number of extensions: 2234444
Number of successful extensions: 20858
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 1710
Number of HSP's that attempted gapping in prelim test: 13362
Number of HSP's gapped (non-prelim): 6885
length of query: 647
length of database: 18,247,518
effective HSP length: 109
effective length of query: 538
effective length of database: 14,120,124
effective search space: 7596626712
effective search space used: 7596626712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.