Guide to the Human Genome
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Search of human proteins with 239742421

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo
sapiens]
         (272 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]           562   e-160
gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo ...   562   e-160
gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo ...   297   8e-81
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            51   1e-06
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         48   8e-06
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     45   5e-05
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]           44   2e-04
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]           44   2e-04
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]           44   2e-04
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]            44   2e-04
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]            44   2e-04
gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo ...    44   2e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    43   3e-04
gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom...    41   0.001
gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom...    41   0.001
gi|169171083 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap...    41   0.001
gi|239508966 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo...    41   0.001
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ...    40   0.002
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ...    40   0.002
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo...    40   0.002
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]            40   0.002
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]            40   0.002
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ...    40   0.002
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ...    40   0.002
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ...    40   0.002

>gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 272

 Score =  562 bits (1449), Expect = e-160
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
           METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP
Sbjct: 1   METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60

Query: 61  HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
           HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR
Sbjct: 61  HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120

Query: 121 LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF 180
           LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF
Sbjct: 121 LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF 180

Query: 181 LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD 240
           LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD
Sbjct: 181 LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD 240

Query: 241 YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH 272
           YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH
Sbjct: 241 YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH 272


>gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo
           sapiens]
          Length = 272

 Score =  562 bits (1449), Expect = e-160
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
           METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP
Sbjct: 1   METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60

Query: 61  HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
           HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR
Sbjct: 61  HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120

Query: 121 LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF 180
           LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF
Sbjct: 121 LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF 180

Query: 181 LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD 240
           LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD
Sbjct: 181 LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD 240

Query: 241 YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH 272
           YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH
Sbjct: 241 YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH 272


>gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo
           sapiens]
          Length = 233

 Score =  297 bits (760), Expect = 8e-81
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
           METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP
Sbjct: 1   METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60

Query: 61  HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
           HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR
Sbjct: 61  HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120

Query: 121 LPAAAKTTSPAVLSAVGPKAKTN 143
           LPAAAKTTSPAVLSAVGPKAKTN
Sbjct: 121 LPAAAKTTSPAVLSAVGPKAKTN 143


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 70/243 (28%), Positives = 84/243 (34%), Gaps = 37/243 (15%)

Query: 45  PRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSP----- 99
           PR+ G  GG R +  P  P E         P    A     R R   RA G         
Sbjct: 184 PRQEGSFGG-RPKSQPPLPQETAAPAPQPGPTAPPA-----RVREPGRAEGASREPRLRS 237

Query: 100 RASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRG-AVLSRAPPPA 158
           RA+R PP   P + S  + SR              A  P+A    G R    L RA PP+
Sbjct: 238 RAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPS 297

Query: 159 PCPSGALQRGGETKGRVFLFGFLGSRRGEC--AGAQAPLHLSRPSVRAR----------- 205
                A    G           +G RRG+C  AG+  P   S    R R           
Sbjct: 298 RARQDAWGLSG--------CATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGG 349

Query: 206 --GGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSDYSLSGFSLIPLPPFVVGACSLRG 263
             G G  A+H  G  +  GRR    V +   R    + S  G  L P P  V GA    G
Sbjct: 350 GEGEGTHATH--GPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFG 407

Query: 264 GGR 266
           GGR
Sbjct: 408 GGR 410


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 43/137 (31%), Positives = 56/137 (40%), Gaps = 17/137 (12%)

Query: 26  PTLRRRVPGNSTPARRARFP-----RRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREA 80
           PT RRR P  + P RR R P     RR+      R   +P R + P+      +P  +  
Sbjct: 554 PTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPK-- 611

Query: 81  GLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKA 140
                  RR A        RAS +PPP R  S SPP   R     K  SP++ S      
Sbjct: 612 -------RRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSS---KHR 661

Query: 141 KTNSGLRGAVLSRAPPP 157
           K +S  R    +R+P P
Sbjct: 662 KGSSPSRSTREARSPQP 678



 Score = 33.1 bits (74), Expect = 0.27
 Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 31/171 (18%)

Query: 26  PTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAE------------PLGLLADA 73
           P  +RR P  S+  R+   P RS R          H P+             P+   A +
Sbjct: 647 PVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASS 706

Query: 74  APVQREAGLGRWRWRRRA---------RAVGTCSPRASRAPPPGRPASASPPAASRLPAA 124
           +P +R++     R  RR          +   + SP++ R     R  S SP  A++ P  
Sbjct: 707 SPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKP-- 764

Query: 125 AKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPS---GALQRGGETK 172
                PA  S V  ++ + +      + +A  P P PS    + Q GG  K
Sbjct: 765 -----PAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGKK 810



 Score = 29.6 bits (65), Expect = 2.9
 Identities = 43/162 (26%), Positives = 56/162 (34%), Gaps = 26/162 (16%)

Query: 26  PTLRRRVPGNSTPA----RRARFP-----RRSGRVGGWRAQVAPHR----PAEPLGLLAD 72
           P+ RRR P    P     RR+R P     R S  + G  +  +  R    P +P    + 
Sbjct: 321 PSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSS 380

Query: 73  AAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAV 132
                R         RRR R      P     PPP    S +P  ++R   +  + SP  
Sbjct: 381 PPRKTRRLSPSASPPRRRHR------PSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGR 434

Query: 133 LSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGA-LQRGGETKG 173
            S    K K      G     +P PAP P    L    E KG
Sbjct: 435 TSGKVTKHK------GTEKRESPSPAPKPRKVELSESEEDKG 470


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 67/235 (28%), Positives = 78/235 (33%), Gaps = 54/235 (22%)

Query: 36  STPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVG 95
           +TP    R PR +       A      P  P   +A AAP               ARA  
Sbjct: 106 ATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAP---------------ARAPR 150

Query: 96  TCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAP 155
             +  A+  P PG PA   P A    P AA   +PA   AV P A        AV +R P
Sbjct: 151 AAAAAATAPPSPG-PAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREP 209

Query: 156 P--------------------PAPCPSGALQRGGETKGRVFL---------FGFLGSR-- 184
           P                    P P P G   R G     V L          G  G R  
Sbjct: 210 PLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGRLT 269

Query: 185 RGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGS 239
           RG   G       +R  +     G LA  R   G+  GR PPA     +ARPS S
Sbjct: 270 RGRVQGLLEEEAAARGRLERTRLGALALPR---GDRPGRAPPA----ASARPSRS 317



 Score = 33.1 bits (74), Expect = 0.27
 Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 60  PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAV----GTCSPRASRAPPPGRPASASP 115
           P R    L  L     V R +  G   +R  AR      G   P   RAP  G PA+A+ 
Sbjct: 66  PERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPR-GAPAAAA- 123

Query: 116 PAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPS 162
            AA+  P  A    PA ++A  P        R A  +   PP+P P+
Sbjct: 124 -AAAPPPTPAPPPPPAPVAAAAPARAP----RAAAAAATAPPSPGPA 165


>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 61/210 (29%), Positives = 75/210 (35%), Gaps = 39/210 (18%)

Query: 92  RAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNS-GLRGAV 150
           R  G+   R    PP   P   + PA    P A     PA  S  GP+ +  S G   A 
Sbjct: 185 RQEGSFGGRPKSQPP--LPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQ 242

Query: 151 LSRAPPPAPC-----PSGALQRG---GETKGR-----------VFLFGFLGSRRGEC--A 189
            +  P P P      P+  L+ G   G T GR                 +G RRG+C  A
Sbjct: 243 PAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRA 302

Query: 190 GAQAPLHLSRPSVRAR-------------GGGFLASHRYGGGNLWGRRPPAWVLSQAARP 236
           G+  P   S    R R             G G  A+H  G  +  GRR    V +   R 
Sbjct: 303 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATH--GPASPPGRRHDEEVGAAVLRA 360

Query: 237 SGSDYSLSGFSLIPLPPFVVGACSLRGGGR 266
              + S  G  L P P  V GA    GGGR
Sbjct: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGR 390


>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 61/210 (29%), Positives = 75/210 (35%), Gaps = 39/210 (18%)

Query: 92  RAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNS-GLRGAV 150
           R  G+   R    PP   P   + PA    P A     PA  S  GP+ +  S G   A 
Sbjct: 185 RQEGSFGGRPKSQPP--LPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQ 242

Query: 151 LSRAPPPAPC-----PSGALQRG---GETKGR-----------VFLFGFLGSRRGEC--A 189
            +  P P P      P+  L+ G   G T GR                 +G RRG+C  A
Sbjct: 243 PAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRA 302

Query: 190 GAQAPLHLSRPSVRAR-------------GGGFLASHRYGGGNLWGRRPPAWVLSQAARP 236
           G+  P   S    R R             G G  A+H  G  +  GRR    V +   R 
Sbjct: 303 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATH--GPASPPGRRHDEEVGAAVLRA 360

Query: 237 SGSDYSLSGFSLIPLPPFVVGACSLRGGGR 266
              + S  G  L P P  V GA    GGGR
Sbjct: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGR 390


>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 61/210 (29%), Positives = 75/210 (35%), Gaps = 39/210 (18%)

Query: 92  RAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNS-GLRGAV 150
           R  G+   R    PP   P   + PA    P A     PA  S  GP+ +  S G   A 
Sbjct: 185 RQEGSFGGRPKSQPP--LPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQ 242

Query: 151 LSRAPPPAPC-----PSGALQRG---GETKGR-----------VFLFGFLGSRRGEC--A 189
            +  P P P      P+  L+ G   G T GR                 +G RRG+C  A
Sbjct: 243 PAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRA 302

Query: 190 GAQAPLHLSRPSVRAR-------------GGGFLASHRYGGGNLWGRRPPAWVLSQAARP 236
           G+  P   S    R R             G G  A+H  G  +  GRR    V +   R 
Sbjct: 303 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATH--GPASPPGRRHDEEVGAAVLRA 360

Query: 237 SGSDYSLSGFSLIPLPPFVVGACSLRGGGR 266
              + S  G  L P P  V GA    GGGR
Sbjct: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGR 390


>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 344

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 18/128 (14%)

Query: 34  GNSTPARRARFPRRSGRVGGW---RAQVAPHRPAEPLGLLADAAPVQREAGLGR----WR 86
           G   P++ A F  R  R   W   R+     R         + A    E GLG     W+
Sbjct: 187 GRGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAAEFGLGGRTCVWQ 246

Query: 87  W--RRRARAVGTC-SPRA--------SRAPPPGRPASASPPAASRLPAAAKTTSPAVLSA 135
              + RAR  G   +PRA        SRAPP  RP  ASP         A+ T+PA L  
Sbjct: 247 GAAQHRARPAGLARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGL 306

Query: 136 VGPKAKTN 143
           V P+ K++
Sbjct: 307 VQPRPKSD 314


>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 344

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 18/128 (14%)

Query: 34  GNSTPARRARFPRRSGRVGGW---RAQVAPHRPAEPLGLLADAAPVQREAGLGR----WR 86
           G   P++ A F  R  R   W   R+     R         + A    E GLG     W+
Sbjct: 187 GRGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAAEFGLGGRTCVWQ 246

Query: 87  W--RRRARAVGTC-SPRA--------SRAPPPGRPASASPPAASRLPAAAKTTSPAVLSA 135
              + RAR  G   +PRA        SRAPP  RP  ASP         A+ T+PA L  
Sbjct: 247 GAAQHRARPAGLARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGL 306

Query: 136 VGPKAKTN 143
           V P+ K++
Sbjct: 307 VQPRPKSD 314


>gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo
           sapiens]
          Length = 344

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 18/128 (14%)

Query: 34  GNSTPARRARFPRRSGRVGGW---RAQVAPHRPAEPLGLLADAAPVQREAGLGR----WR 86
           G   P++ A F  R  R   W   R+     R         + A    E GLG     W+
Sbjct: 187 GRGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAAEFGLGGRTCVWQ 246

Query: 87  W--RRRARAVGTC-SPRA--------SRAPPPGRPASASPPAASRLPAAAKTTSPAVLSA 135
              + RAR  G   +PRA        SRAPP  RP  ASP         A+ T+PA L  
Sbjct: 247 GAAQHRARPAGLARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGL 306

Query: 136 VGPKAKTN 143
           V P+ K++
Sbjct: 307 VQPRPKSD 314


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 43/141 (30%), Positives = 55/141 (39%), Gaps = 13/141 (9%)

Query: 91  ARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSA---VGPKAKTNSGLR 147
           A  VG+  P +S APP   P S +PP +   P    T  PAV SA     P    +SG+ 
Sbjct: 118 APGVGSAPPASSSAPPATPPTSGAPPGSG--PGPTPTPPPAVTSAPPGAPPPTPPSSGVP 175

Query: 148 GAVLSRAPPPAPCPSGALQRGGETKGRVFLFGFLGSRRGECAGAQAPLHLSRPSVRARGG 207
                   PP P  +      G  +G     G  G + G+  G   P     P +   GG
Sbjct: 176 TTPPQAGGPPPPPAAVPGPGPGPKQGP----GPGGPKGGKMPGGPKP--GGGPGLSTPGG 229

Query: 208 GFLASHRYGGGNLWGRR--PP 226
                HR GG    GR+  PP
Sbjct: 230 HPKPPHRGGGEPRGGRQHHPP 250



 Score = 32.0 bits (71), Expect = 0.59
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 197 LSRPSVRARGGGFLASHRYGGGNLWG------RRPPAWVLSQAARPSGSDYSLSGFSLIP 250
           +SR   R+RGGG    HR GGG   G        PP   L+Q   P G     SG    P
Sbjct: 1   MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSG-PKPP 59

Query: 251 LPP 253
           +PP
Sbjct: 60  IPP 62



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 19/60 (31%), Positives = 22/60 (36%)

Query: 105 PPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGA 164
           PPP +P     P   + P      S   + A GP      G      S APP  P  SGA
Sbjct: 82  PPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGA 141


>gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 157

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 60  PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRA--SRAPPPG-RPASASPP 116
           P  P+EPL      +P    A  GR   R RAR  G C P     RAPPPG RP +A+  
Sbjct: 9   PTAPSEPLTCPMGVSP----APWGRPLRRSRARP-GPCPPEGLVPRAPPPGPRPTAAATR 63

Query: 117 AASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
           A  R+P   +T  P       P    ++  R   L   PP  P
Sbjct: 64  ATFRVP-ERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105


>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 56  AQVAPHRPAEP--LGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASA 113
           +QV P R  EP   G L   AP     G  + +   RA       P    APP   PA  
Sbjct: 350 SQVYPDRAPEPDCPGELKATAPASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPP 409

Query: 114 SPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
            PPAA  LP A K   P       PK+ +      A+  +  PP+P
Sbjct: 410 LPPAAPPLPCAQKAAHPPAGFTKTPKSSS-----PALKPKPNPPSP 450



 Score = 28.9 bits (63), Expect = 5.0
 Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 13/118 (11%)

Query: 99  PRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPA 158
           P     PPP   A   PP    L      +SP++ +   P          A L+  PPP 
Sbjct: 175 PLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSIPT---PPDFIPPAPPLAFLAPPPPPV 231

Query: 159 PCPSGALQRGGETKG-RVFLFG---------FLGSRRGECAGAQAPLHLSRPSVRARG 206
           P P+        T G R+F  G          L  R+ E   A  P   + P   A G
Sbjct: 232 PAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289


>gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 157

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 60  PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRA--SRAPPPG-RPASASPP 116
           P  P+EPL      +P    A  GR   R RAR  G C P     RAPPPG RP +A+  
Sbjct: 9   PTAPSEPLTCPMGVSP----APWGRPLRRSRARP-GPCPPEGLVPRAPPPGPRPTAAATR 63

Query: 117 AASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
           A  R+P   +T  P       P    ++  R   L   PP  P
Sbjct: 64  ATFRVP-ERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105


>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 56  AQVAPHRPAEP--LGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASA 113
           +QV P R  EP   G L   AP     G  + +   RA       P    APP   PA  
Sbjct: 350 SQVYPDRAPEPDCPGELKATAPASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPP 409

Query: 114 SPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
            PPAA  LP A K   P       PK+ +      A+  +  PP+P
Sbjct: 410 LPPAAPPLPCAQKAAHPPAGFTKTPKSSS-----PALKPKPNPPSP 450



 Score = 28.9 bits (63), Expect = 5.0
 Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 13/118 (11%)

Query: 99  PRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPA 158
           P     PPP   A   PP    L      +SP++ +   P          A L+  PPP 
Sbjct: 175 PLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSIPT---PPDFIPPAPPLAFLAPPPPPV 231

Query: 159 PCPSGALQRGGETKG-RVFLFG---------FLGSRRGECAGAQAPLHLSRPSVRARG 206
           P P+        T G R+F  G          L  R+ E   A  P   + P   A G
Sbjct: 232 PAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289


>gi|169171083 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 157

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 60  PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRA--SRAPPPG-RPASASPP 116
           P  P+EPL      +P    A  GR   R RAR  G C P     RAPPPG RP +A+  
Sbjct: 9   PTAPSEPLTCPMGVSP----APWGRPLRRSRARP-GPCPPEGLVPRAPPPGPRPTAAATR 63

Query: 117 AASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
           A  R+P   +T  P       P    ++  R   L   PP  P
Sbjct: 64  ATFRVP-ERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105


>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
           sapiens]
          Length = 1188

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 56  AQVAPHRPAEP--LGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASA 113
           +QV P R  EP   G L   AP     G  + +   RA       P    APP   PA  
Sbjct: 350 SQVYPDRAPEPDCPGELKATAPASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPP 409

Query: 114 SPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
            PPAA  LP A K   P       PK+ +      A+  +  PP+P
Sbjct: 410 LPPAAPPLPCAQKAAHPPAGFTKTPKSSS-----PALKPKPNPPSP 450



 Score = 28.9 bits (63), Expect = 5.0
 Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 13/118 (11%)

Query: 99  PRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPA 158
           P     PPP   A   PP    L      +SP++ +   P          A L+  PPP 
Sbjct: 175 PLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSIPT---PPDFIPPAPPLAFLAPPPPPV 231

Query: 159 PCPSGALQRGGETKG-RVFLFG---------FLGSRRGECAGAQAPLHLSRPSVRARG 206
           P P+        T G R+F  G          L  R+ E   A  P   + P   A G
Sbjct: 232 PAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289


>gi|239508966 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 157

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 60  PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRA--SRAPPPG-RPASASPP 116
           P  P+EPL      +P    A  GR   R RAR  G C P     RAPPPG RP +A+  
Sbjct: 9   PTAPSEPLTCPMGVSP----APWGRPLRRSRARP-GPCPPEGLVPRAPPPGPRPTAAATR 63

Query: 117 AASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
           A  R+P   +T  P       P    ++  R   L   PP  P
Sbjct: 64  ATFRVP-ERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105


>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 268

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 56/190 (29%), Positives = 65/190 (34%), Gaps = 50/190 (26%)

Query: 27  TLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWR 86
           T R   PG +   RR R  RR  +VGGW                       R  GL    
Sbjct: 80  TPRPAAPGAAPRPRRQRLRRRRAKVGGWGC--------------------ARARGLD--- 116

Query: 87  WRRRARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGL 146
             RRA   G  SP     P PG     +  A    PAAA+   P   S   P+       
Sbjct: 117 --RRAPGEGGRSPGGGLEPSPG-----ARGAVGAAPAAARHRKPRGRSRRAPQMP----- 164

Query: 147 RGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGFLGSR----RGECAGAQAPLHLSRPSV 202
               L   PP  P   G  + GG T GR    G  G R    R    GA  P  +  PS+
Sbjct: 165 ----LRVLPPILP---GLSRAGGATGGR----GLPGRRGLPGRSGLQGAAVPPPVGVPSL 213

Query: 203 RARGGGFLAS 212
           R R    LA+
Sbjct: 214 RGRPWEALAT 223


>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
           sapiens]
          Length = 606

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 46/160 (28%), Positives = 59/160 (36%), Gaps = 25/160 (15%)

Query: 21  EIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQ-----VAPHRPAEPLGLLADAAP 75
           EI +  T+ R  PG   P          G VGG   +     + P  P  P G   +A P
Sbjct: 447 EILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGRGPKGDPGSLGPLGPQGPQGQPGEAGP 506

Query: 76  VQREAGLGRWRW---RRRARAVGTCSPRASRAP--------PPGRPASASPPAASRLPA- 123
           V     +G   +   +    + GT  PR    P        P G P S  P      P  
Sbjct: 507 VGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPKGDIGPPGPEGPPGSPGPSGPQGKPGI 566

Query: 124 AAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSG 163
           A KT SP    A+GPK +   G++G      PP  P P G
Sbjct: 567 AGKTGSPGQRGAMGPKGE--PGIQG------PPGLPGPPG 598


>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
           sapiens]
          Length = 177

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 15  RCALWKEIHKGPTLRR-RVPGNSTPARRARFPRRSGRVGGWRA---QVAPHRPAEPLGLL 70
           R A+   +  GP+ RR R+P      R     R  G           + P+  A P  + 
Sbjct: 22  RPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS 81

Query: 71  ADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
              AP +   G  RWR R   R      P  +RA P G P  ++PPA  R
Sbjct: 82  CRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRR 131



 Score = 28.9 bits (63), Expect = 5.0
 Identities = 38/107 (35%), Positives = 45/107 (42%), Gaps = 13/107 (12%)

Query: 62  RPAEPLGLLADAAPVQREAGLGRWRWRRRA--RAVGTCSPRASRAPPPGRPASASP-PAA 118
           RPA   GL    +P +     G  R R R   RA+G  SP    AP     ASASP P +
Sbjct: 22  RPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS 81

Query: 119 SR------LPAAAK---TTSPAVLSAVGPKAKTNSGLRGAVLSRAPP 156
            R      +P AA+      P   S  GP A T +   GA    APP
Sbjct: 82  CRRAPPRPVPGAARWRGRPEPRPGSPAGP-APTRARPLGAPGRSAPP 127


>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
           sapiens]
          Length = 177

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 15  RCALWKEIHKGPTLRR-RVPGNSTPARRARFPRRSGRVGGWRA---QVAPHRPAEPLGLL 70
           R A+   +  GP+ RR R+P      R     R  G           + P+  A P  + 
Sbjct: 22  RPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS 81

Query: 71  ADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
              AP +   G  RWR R   R      P  +RA P G P  ++PPA  R
Sbjct: 82  CRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRR 131



 Score = 28.9 bits (63), Expect = 5.0
 Identities = 38/107 (35%), Positives = 45/107 (42%), Gaps = 13/107 (12%)

Query: 62  RPAEPLGLLADAAPVQREAGLGRWRWRRRA--RAVGTCSPRASRAPPPGRPASASP-PAA 118
           RPA   GL    +P +     G  R R R   RA+G  SP    AP     ASASP P +
Sbjct: 22  RPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS 81

Query: 119 SR------LPAAAK---TTSPAVLSAVGPKAKTNSGLRGAVLSRAPP 156
            R      +P AA+      P   S  GP A T +   GA    APP
Sbjct: 82  CRRAPPRPVPGAARWRGRPEPRPGSPAGP-APTRARPLGAPGRSAPP 127


>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
           sapiens]
          Length = 483

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 47/185 (25%), Positives = 63/185 (34%), Gaps = 39/185 (21%)

Query: 15  RCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLG-LLADA 73
           R AL  +I +G  LR+    N   A +    + + + GG  A          LG L A  
Sbjct: 46  RSALLADIQQGTRLRKVTQINDRSAPQIESSKGTNKEGGGSANTRGASTPPTLGDLFAGG 105

Query: 74  APVQREAGLGRWRWRRRARAVGT-------------------CSPRASR----------- 103
            PV R AG       +  +  G+                    SPR              
Sbjct: 106 FPVLRPAGQRDVAGGKTGQGPGSRAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTA 165

Query: 104 -------APPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPP 156
                  APPP  P    PP    LP+++   +P V S  GP  K N  +    +  APP
Sbjct: 166 PPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLV-SPPGPLTKGNLPVVAPPVPCAPP 224

Query: 157 PAPCP 161
           P P P
Sbjct: 225 PPPPP 229


>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 180

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 39/132 (29%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 38  PARRARFPRRSGRVGGWRAQVAP--HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVG 95
           PA R R P  +       A + P   RP    G L    PV R    G   W ++    G
Sbjct: 20  PAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG 79

Query: 96  TC-SPRASRAPPPGRPASASPPAASRLPAAAKTTSP-AVLSAVGPKAKTNSGLRGAVLSR 153
              +P   RAP    P SAS P A+  P       P   +S V P     +GL  +   R
Sbjct: 80  PLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPR 139

Query: 154 ----APPPAPCP 161
                PPP   P
Sbjct: 140 PQDGTPPPVDTP 151



 Score = 31.2 bits (69), Expect = 1.0
 Identities = 39/119 (32%), Positives = 43/119 (36%), Gaps = 23/119 (19%)

Query: 26  PTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGL-LADAAPVQREAGLGR 84
           P L++R PG      R +   R  R G       P RP  PLG  L D AP     G   
Sbjct: 41  PPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG-PLGAPLQDRAPSAHVPG--- 96

Query: 85  WRWRRRARAVGT-CSPRASRAPP----------PGRPASASPPAASRLPAAAKTTSPAV 132
                 +R   T   PR SR PP          PGRPA       SR P     T P V
Sbjct: 97  ----SASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLH---RSREPRPQDGTPPPV 148


>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 382

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 43/130 (33%), Positives = 52/130 (40%), Gaps = 29/130 (22%)

Query: 4   PGEQ---AGGKGADRCALWKEIHKGPTLRRR---VPGNSTPARRA--RFPRRSGRVGGWR 55
           PG Q    GG G  R   W+    GP++R     + G   P+R A  R  R  G VG W 
Sbjct: 258 PGMQKRSGGGSGGQRAGGWQP---GPSVRESCIDMAGRERPSRGAGQRPQRVRGSVGPWN 314

Query: 56  AQVAPHRPAEPLGLLADAAPVQREAGL-GRWRWRRRARAVGTCSPRASRAPPPGRPASAS 114
                      LG        +R + L   W  R R R VGTC       P PG P + S
Sbjct: 315 LG--------SLGKKNKQETNRRGSSLRAAWSGRGRFRKVGTC-------PTPGPPDAPS 359

Query: 115 PP--AASRLP 122
           PP    S+LP
Sbjct: 360 PPQLRVSKLP 369



 Score = 33.9 bits (76), Expect = 0.16
 Identities = 47/153 (30%), Positives = 58/153 (37%), Gaps = 35/153 (22%)

Query: 73  AAPVQREAGLGRWRWRRR-----------------ARAVGTCSPRASRAPPPGRPASASP 115
           A P QR +     R RRR                 AR  G    RA+R  PP  P S   
Sbjct: 67  AGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVSPPTPPRSGLD 126

Query: 116 PAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSR-APPPAPCPSGALQR-GGETKG 173
           P       A  + +PA L+      +T +GLR +   R +PP     SG  +R GG T+G
Sbjct: 127 P-------AVPSPTPAPLARC---RQTRAGLRLSTGGRLSPPLRRAASGEWKRPGGLTQG 176

Query: 174 RVFLFGFLGSRRGECAGAQAPLHLSRPSVRARG 206
                 F G   G       P  L RP  R RG
Sbjct: 177 E-----FAGRGAGGARVTHRPGRL-RPRGRGRG 203



 Score = 31.2 bits (69), Expect = 1.0
 Identities = 52/205 (25%), Positives = 67/205 (32%), Gaps = 33/205 (16%)

Query: 30  RRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRR 89
           RR+P   TPA      R  G      A+V+P  P  P   L  A P    A L R R  R
Sbjct: 87  RRLPPALTPAGPYHSARPGGGARARAARVSP--PTPPRSGLDPAVPSPTPAPLARCRQTR 144

Query: 90  RARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGL--- 146
               + T      R  PP R A++      + P        A   A G +     G    
Sbjct: 145 AGLRLST----GGRLSPPLRRAAS---GEWKRPGGLTQGEFAGRGAGGARVTHRPGRLRP 197

Query: 147 --RGAVLSRAPPPA------------PCPSGALQRGGETKGRVFLFGFLGSRRGECAGAQ 192
             RG   +R   PA             CP    +  G+ +          +R G C G  
Sbjct: 198 RGRGRGRARRTCPARRRGEEDLRVQDSCPQAGCRAMGQRRVLKAEGARARARGGVCFG-- 255

Query: 193 APLHLSRPSVRARGGGFLASHRYGG 217
                 RP ++ R GG     R GG
Sbjct: 256 -----PRPGMQKRSGGGSGGQRAGG 275


>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
           sapiens]
          Length = 180

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 39/132 (29%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 38  PARRARFPRRSGRVGGWRAQVAP--HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVG 95
           PA R R P  +       A + P   RP    G L    PV R    G   W ++    G
Sbjct: 20  PAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG 79

Query: 96  TC-SPRASRAPPPGRPASASPPAASRLPAAAKTTSP-AVLSAVGPKAKTNSGLRGAVLSR 153
              +P   RAP    P SAS P A+  P       P   +S V P     +GL  +   R
Sbjct: 80  PLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPR 139

Query: 154 ----APPPAPCP 161
                PPP   P
Sbjct: 140 PQDGTPPPVDTP 151



 Score = 31.2 bits (69), Expect = 1.0
 Identities = 39/119 (32%), Positives = 43/119 (36%), Gaps = 23/119 (19%)

Query: 26  PTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGL-LADAAPVQREAGLGR 84
           P L++R PG      R +   R  R G       P RP  PLG  L D AP     G   
Sbjct: 41  PPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG-PLGAPLQDRAPSAHVPG--- 96

Query: 85  WRWRRRARAVGT-CSPRASRAPP----------PGRPASASPPAASRLPAAAKTTSPAV 132
                 +R   T   PR SR PP          PGRPA       SR P     T P V
Sbjct: 97  ----SASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLH---RSREPRPQDGTPPPV 148


>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
           sapiens]
          Length = 382

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 43/130 (33%), Positives = 52/130 (40%), Gaps = 29/130 (22%)

Query: 4   PGEQ---AGGKGADRCALWKEIHKGPTLRRR---VPGNSTPARRA--RFPRRSGRVGGWR 55
           PG Q    GG G  R   W+    GP++R     + G   P+R A  R  R  G VG W 
Sbjct: 258 PGMQKRSGGGSGGQRAGGWQP---GPSVRESCIDMAGRERPSRGAGQRPQRVRGSVGPWN 314

Query: 56  AQVAPHRPAEPLGLLADAAPVQREAGL-GRWRWRRRARAVGTCSPRASRAPPPGRPASAS 114
                      LG        +R + L   W  R R R VGTC       P PG P + S
Sbjct: 315 LG--------SLGKKNKQETNRRGSSLRAAWSGRGRFRKVGTC-------PTPGPPDAPS 359

Query: 115 PP--AASRLP 122
           PP    S+LP
Sbjct: 360 PPQLRVSKLP 369



 Score = 33.9 bits (76), Expect = 0.16
 Identities = 47/153 (30%), Positives = 58/153 (37%), Gaps = 35/153 (22%)

Query: 73  AAPVQREAGLGRWRWRRR-----------------ARAVGTCSPRASRAPPPGRPASASP 115
           A P QR +     R RRR                 AR  G    RA+R  PP  P S   
Sbjct: 67  AGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVSPPTPPRSGLD 126

Query: 116 PAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSR-APPPAPCPSGALQR-GGETKG 173
           P       A  + +PA L+      +T +GLR +   R +PP     SG  +R GG T+G
Sbjct: 127 P-------AVPSPTPAPLARC---RQTRAGLRLSTGGRLSPPLRRAASGEWKRPGGLTQG 176

Query: 174 RVFLFGFLGSRRGECAGAQAPLHLSRPSVRARG 206
                 F G   G       P  L RP  R RG
Sbjct: 177 E-----FAGRGAGGARVTHRPGRL-RPRGRGRG 203



 Score = 31.2 bits (69), Expect = 1.0
 Identities = 52/205 (25%), Positives = 67/205 (32%), Gaps = 33/205 (16%)

Query: 30  RRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRR 89
           RR+P   TPA      R  G      A+V+P  P  P   L  A P    A L R R  R
Sbjct: 87  RRLPPALTPAGPYHSARPGGGARARAARVSP--PTPPRSGLDPAVPSPTPAPLARCRQTR 144

Query: 90  RARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGL--- 146
               + T      R  PP R A++      + P        A   A G +     G    
Sbjct: 145 AGLRLST----GGRLSPPLRRAAS---GEWKRPGGLTQGEFAGRGAGGARVTHRPGRLRP 197

Query: 147 --RGAVLSRAPPPA------------PCPSGALQRGGETKGRVFLFGFLGSRRGECAGAQ 192
             RG   +R   PA             CP    +  G+ +          +R G C G  
Sbjct: 198 RGRGRGRARRTCPARRRGEEDLRVQDSCPQAGCRAMGQRRVLKAEGARARARGGVCFG-- 255

Query: 193 APLHLSRPSVRARGGGFLASHRYGG 217
                 RP ++ R GG     R GG
Sbjct: 256 -----PRPGMQKRSGGGSGGQRAGG 275


>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
           sapiens]
          Length = 180

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 39/132 (29%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 38  PARRARFPRRSGRVGGWRAQVAP--HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVG 95
           PA R R P  +       A + P   RP    G L    PV R    G   W ++    G
Sbjct: 20  PAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG 79

Query: 96  TC-SPRASRAPPPGRPASASPPAASRLPAAAKTTSP-AVLSAVGPKAKTNSGLRGAVLSR 153
              +P   RAP    P SAS P A+  P       P   +S V P     +GL  +   R
Sbjct: 80  PLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPR 139

Query: 154 ----APPPAPCP 161
                PPP   P
Sbjct: 140 PQDGTPPPVDTP 151



 Score = 31.2 bits (69), Expect = 1.0
 Identities = 39/119 (32%), Positives = 43/119 (36%), Gaps = 23/119 (19%)

Query: 26  PTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGL-LADAAPVQREAGLGR 84
           P L++R PG      R +   R  R G       P RP  PLG  L D AP     G   
Sbjct: 41  PPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG-PLGAPLQDRAPSAHVPG--- 96

Query: 85  WRWRRRARAVGT-CSPRASRAPP----------PGRPASASPPAASRLPAAAKTTSPAV 132
                 +R   T   PR SR PP          PGRPA       SR P     T P V
Sbjct: 97  ----SASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLH---RSREPRPQDGTPPPV 148


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,903,525
Number of Sequences: 37866
Number of extensions: 806212
Number of successful extensions: 8908
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 861
Number of HSP's that attempted gapping in prelim test: 6781
Number of HSP's gapped (non-prelim): 2576
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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