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Search of human proteins with 239742355
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742355 PREDICTED: hypothetical protein XP_002342499 [Homo
sapiens]
(137 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742355 PREDICTED: hypothetical protein XP_002342499 [Homo ... 270 2e-73
gi|118498366 hypothetical protein LOC283635 isoform 2 [Homo sapi... 165 1e-41
gi|118498371 hypothetical protein LOC283635 isoform 1 [Homo sapi... 165 1e-41
gi|125346184 hypothetical protein LOC400823 [Homo sapiens] 45 1e-05
gi|55956788 nucleolin [Homo sapiens] 43 7e-05
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 41 4e-04
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 41 4e-04
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 40 8e-04
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 39 0.001
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 39 0.001
gi|169210053 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|154146191 heat shock 90kDa protein 1, alpha isoform 2 [Homo s... 37 0.005
gi|153792590 heat shock 90kDa protein 1, alpha isoform 1 [Homo s... 37 0.005
gi|215490093 ATPase, (Na+)/K+ transporting, beta 4 polypeptide i... 37 0.005
gi|6912256 ATPase, (Na+)/K+ transporting, beta 4 polypeptide iso... 37 0.005
gi|17975763 myelin transcription factor 1 [Homo sapiens] 37 0.007
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens] 37 0.007
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 37 0.007
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 37 0.007
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 37 0.007
gi|60498973 myelin transcription factor 1-like [Homo sapiens] 36 0.009
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 36 0.009
gi|221219020 NYD-SP11 protein [Homo sapiens] 36 0.011
gi|21735569 claspin [Homo sapiens] 36 0.011
gi|55741661 hypothetical protein LOC57653 [Homo sapiens] 36 0.011
gi|118600967 shroom family member 4 [Homo sapiens] 35 0.015
gi|121114306 neurogenic differentiation 1 [Homo sapiens] 35 0.015
gi|155722990 solute carrier family 4 (anion exchanger), member 1... 35 0.015
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 35 0.015
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 35 0.015
>gi|239742355 PREDICTED: hypothetical protein XP_002342499 [Homo
sapiens]
Length = 137
Score = 270 bits (691), Expect = 2e-73
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MSDKRGFENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEE 60
MSDKRGFENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEE
Sbjct: 1 MSDKRGFENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEE 60
Query: 61 EGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQTDQPGTVVFSSFGNLNFEMEGDSEVI 120
EGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQTDQPGTVVFSSFGNLNFEMEGDSEVI
Sbjct: 61 EGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQTDQPGTVVFSSFGNLNFEMEGDSEVI 120
Query: 121 MESKQNLELSHSLLSET 137
MESKQNLELSHSLLSET
Sbjct: 121 MESKQNLELSHSLLSET 137
>gi|118498366 hypothetical protein LOC283635 isoform 2 [Homo
sapiens]
Length = 213
Score = 165 bits (417), Expect = 1e-41
Identities = 97/176 (55%), Positives = 112/176 (63%), Gaps = 51/176 (28%)
Query: 1 MSDKRGFENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEE 60
MS++RGFENVELGVI KKKVPRR I FVS +TM+EYSTDEDEVDGLE+KDVLPT+DP +
Sbjct: 33 MSNERGFENVELGVIGKKKKVPRRVIHFVSGETMEEYSTDEDEVDGLEKKDVLPTVDPTK 92
Query: 61 --------------------------------------------------EGEEEEEEEE 70
+ EEEEEEEE
Sbjct: 93 LTWGPYLWFYMLRAATSTLSVCDFLGEKIASVLGISTPKYQYAIDEYYRMKKEEEEEEEE 152
Query: 71 NTLSQKKKKKKPQQNKLQTDSIVQTDQPGTVVFSSFGNLNFEMEGDSEVIMESKQN 126
N +S++ +K+ QQNKLQTDSIVQTDQP TV+ SSF N+NFEMEGDSEVIMESKQN
Sbjct: 153 NRMSEEAEKQY-QQNKLQTDSIVQTDQPETVISSSFVNVNFEMEGDSEVIMESKQN 207
>gi|118498371 hypothetical protein LOC283635 isoform 1 [Homo
sapiens]
Length = 236
Score = 165 bits (417), Expect = 1e-41
Identities = 97/176 (55%), Positives = 112/176 (63%), Gaps = 51/176 (28%)
Query: 1 MSDKRGFENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEE 60
MS++RGFENVELGVI KKKVPRR I FVS +TM+EYSTDEDEVDGLE+KDVLPT+DP +
Sbjct: 56 MSNERGFENVELGVIGKKKKVPRRVIHFVSGETMEEYSTDEDEVDGLEKKDVLPTVDPTK 115
Query: 61 --------------------------------------------------EGEEEEEEEE 70
+ EEEEEEEE
Sbjct: 116 LTWGPYLWFYMLRAATSTLSVCDFLGEKIASVLGISTPKYQYAIDEYYRMKKEEEEEEEE 175
Query: 71 NTLSQKKKKKKPQQNKLQTDSIVQTDQPGTVVFSSFGNLNFEMEGDSEVIMESKQN 126
N +S++ +K+ QQNKLQTDSIVQTDQP TV+ SSF N+NFEMEGDSEVIMESKQN
Sbjct: 176 NRMSEEAEKQY-QQNKLQTDSIVQTDQPETVISSSFVNVNFEMEGDSEVIMESKQN 230
>gi|125346184 hypothetical protein LOC400823 [Homo sapiens]
Length = 158
Score = 45.4 bits (106), Expect = 1e-05
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 6 GFENVELGV-IQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEE 60
GF+ ++L + KK P+R I FV D M+EYST+E+E + E + TLDP +
Sbjct: 5 GFQQLDLEKSVPSKKTTPKRIIHFVDGDIMEEYSTEEEEEEEKEEQSTNSTLDPSK 60
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 43.1 bits (100), Expect = 7e-05
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 8 ENVELGVIQGKKK---VPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEE 64
E +E +GKK VP +A D+ +E DED+ D + +D D EEE EE
Sbjct: 209 EAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEE 268
Query: 65 EEEEEENTLSQKKKKKKPQQNKLQT-DSIVQTDQPGTVVFSSFGNLNF 111
EEE + ++KK+ Q+ + V+ +P T GNLNF
Sbjct: 269 EEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNF 316
Score = 28.1 bits (61), Expect = 2.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 38 STDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKK 81
S DED+ D + +D D +EE + EEE E T ++ KK K
Sbjct: 184 SEDEDDEDDEDDEDD----DDDEEDDSEEEAMETTPAKGKKAAK 223
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 40.8 bits (94), Expect = 4e-04
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 18 KKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKK 77
K+K RR I D + + S E+E + E ++ EEE EEEEEE+EN S+
Sbjct: 1382 KQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEE------EEEEEEEEEEEDENDDSKSP 1435
Query: 78 KKKKPQQNKLQTDSIVQTD 96
K + + K+ D ++T+
Sbjct: 1436 GKGRKKIRKILKDDKLRTE 1454
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 40.8 bits (94), Expect = 4e-04
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 18 KKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKK 77
K+K RR I D + + S E+E + E ++ EEE EEEEEE+EN S+
Sbjct: 1420 KQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEE------EEEEEEEEEEEDENDDSKSP 1473
Query: 78 KKKKPQQNKLQTDSIVQTD 96
K + + K+ D ++T+
Sbjct: 1474 GKGRKKIRKILKDDKLRTE 1492
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 39.7 bits (91), Expect = 8e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 23 RRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKP 82
R +L +S ++ +E +EDE + E ++ + EEE EEEEEEEEN S + KP
Sbjct: 1058 RGQLLELSKESSEEEEEEEDEEEEEEEEEEEED-EEEEEEEEEEEEEENIQSSPPRLTKP 1116
Query: 83 Q 83
Q
Sbjct: 1117 Q 1117
Score = 31.6 bits (70), Expect = 0.21
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 57 DPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQT 89
+ EEE EEEEEEEE+ +++++++ ++ +Q+
Sbjct: 1076 EDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQS 1108
Score = 31.2 bits (69), Expect = 0.28
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 57 DPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQTDQP 98
+ EEE E+EEEEEE ++ ++++ ++ + + + +Q+ P
Sbjct: 1070 EEEEEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQSSPP 1111
Score = 28.5 bits (62), Expect = 1.8
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 13/67 (19%)
Query: 35 KEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQ 94
KE S +E+E + +EE EEEEEEEE +++++++ ++ + S +
Sbjct: 1066 KESSEEEEE-------------EEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQSSPPR 1112
Query: 95 TDQPGTV 101
+P +V
Sbjct: 1113 LTKPQSV 1119
Score = 28.5 bits (62), Expect = 1.8
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 56 LDPEEEGEEEEEEEENTLSQKKKKKK 81
+ PEEE EEEEEEEE ++ ++++
Sbjct: 1348 IKPEEEEEEEEEEEEEEEEEEGEEEE 1373
Score = 27.3 bits (59), Expect = 4.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 51 DVLPTLDPEEEGEEEEEEEENTLSQKKK 78
D++ + EEE EEEEEEEE ++++
Sbjct: 1346 DLIKPEEEEEEEEEEEEEEEEEEGEEEE 1373
Score = 26.6 bits (57), Expect = 6.9
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 46 GLERKDVLPTLDPEEEGEEEEEEEE 70
G + +D L + EEE EEEEEEEE
Sbjct: 1340 GEKPEDDLIKPEEEEEEEEEEEEEE 1364
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 2 SDKRG--FENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPE 59
SD++G EN E GV + ++ D+ ++E + +++EVD +D + E
Sbjct: 191 SDEQGNNTENEEEGVEEDVEE----------DEEVEEDAEEDEEVD----EDGEEEEEEE 236
Query: 60 EEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQTDQPGTVVFS 104
EE EEEEEEEE Q ++ +K + N T S +V F+
Sbjct: 237 EEEEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFT 281
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 2 SDKRG--FENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPE 59
SD++G EN E GV + ++ D+ ++E + +++EVD +D + E
Sbjct: 191 SDEQGNNTENEEEGVEEDVEE----------DEEVEEDAEEDEEVD----EDGEEEEEEE 236
Query: 60 EEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQTDQPGTVVFS 104
EE EEEEEEEE Q ++ +K + N T S +V F+
Sbjct: 237 EEEEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFT 281
>gi|169210053 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 37.4 bits (85), Expect = 0.004
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 35 KEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQ 94
+E +E+EV+ E+++ + EEE EEE+EE+E ++ KK + ++ + + D+ +Q
Sbjct: 121 EEVEEEEEEVEEEEKEEEKEEDEEEEEKEEEKEEDEEEEEKEGKKMEEEKVEEEIDTEIQ 180
Query: 95 TDQ 97
Q
Sbjct: 181 RTQ 183
Score = 30.8 bits (68), Expect = 0.36
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 21 VPRRAILFVSDDTMKE-YSTDEDEVDGLERKDVLPTLDPEEEGEEEEEE-------EENT 72
V R A L + + ++ +E+EV+ E ++ + + EEE EE+EEE EE+
Sbjct: 99 VARTAALVAEECSAQQGLPVEEEEVE--EEEEEVEEEEKEEEKEEDEEEEEKEEEKEEDE 156
Query: 73 LSQKKKKKKPQQNKLQTD 90
++K+ KK ++ K++ +
Sbjct: 157 EEEEKEGKKMEEEKVEEE 174
Score = 28.1 bits (61), Expect = 2.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 58 PEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQTDQ 97
P EE E EEEEEE +K+++K+ + + + + + D+
Sbjct: 117 PVEEEEVEEEEEEVEEEEKEEEKEEDEEEEEKEEEKEEDE 156
>gi|154146191 heat shock 90kDa protein 1, alpha isoform 2 [Homo
sapiens]
Length = 732
Score = 37.0 bits (84), Expect = 0.005
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 27 LFVSDDTMKEYSTDE-----DEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKK 81
LFV + KE S DE D+ + E+++ PE E +EEEE KKKKKK
Sbjct: 220 LFVEKERDKEVSDDEAEEKEDKEEEKEKEEKESEDKPEIEDVGSDEEEEKKDGDKKKKKK 279
Query: 82 PQ-----QNKLQTDSIVQTDQPGTVVFSSFGNLNFEMEGDSE 118
+ Q +L + T P + +G + D E
Sbjct: 280 IKEKYIDQEELNKTKPIWTRNPDDITNEEYGEFYKSLTNDWE 321
>gi|153792590 heat shock 90kDa protein 1, alpha isoform 1 [Homo
sapiens]
Length = 854
Score = 37.0 bits (84), Expect = 0.005
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 27 LFVSDDTMKEYSTDE-----DEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKK 81
LFV + KE S DE D+ + E+++ PE E +EEEE KKKKKK
Sbjct: 342 LFVEKERDKEVSDDEAEEKEDKEEEKEKEEKESEDKPEIEDVGSDEEEEKKDGDKKKKKK 401
Query: 82 PQ-----QNKLQTDSIVQTDQPGTVVFSSFGNLNFEMEGDSE 118
+ Q +L + T P + +G + D E
Sbjct: 402 IKEKYIDQEELNKTKPIWTRNPDDITNEEYGEFYKSLTNDWE 443
>gi|215490093 ATPase, (Na+)/K+ transporting, beta 4 polypeptide
isoform A [Homo sapiens]
Length = 357
Score = 37.0 bits (84), Expect = 0.005
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 31 DDTMKEYSTDEDEVDGLE-RKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQN 85
D+ + Y DE+E E R V+P + EEE EE+EEEEE +++ + +P N
Sbjct: 25 DEANQNYLADEEEEAEEEARVTVVPKSEEEEEEEEKEEEEEEEKEEEEGQGQPTGN 80
>gi|6912256 ATPase, (Na+)/K+ transporting, beta 4 polypeptide
isoform B [Homo sapiens]
Length = 353
Score = 37.0 bits (84), Expect = 0.005
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 31 DDTMKEYSTDEDEVDGLE-RKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQN 85
D+ + Y DE+E E R V+P + EEE EE+EEEEE +++ + +P N
Sbjct: 25 DEANQNYLADEEEEAEEEARVTVVPKSEEEEEEEEKEEEEEEEKEEEEGQGQPTGN 80
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 36.6 bits (83), Expect = 0.007
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 35 KEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQ 94
+E +E+E + E +D + EEE EEEEEEEE +++++++ ++ + D I Q
Sbjct: 258 EEEDEEEEEEEEEEEED---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQ 314
Query: 95 TDQPGT 100
D T
Sbjct: 315 EDTSHT 320
Score = 33.9 bits (76), Expect = 0.043
Identities = 17/73 (23%), Positives = 39/73 (53%)
Query: 31 DDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTD 90
+D E S+ + + E +D + EEE E+EEEEEE +++++++ ++ + + +
Sbjct: 241 EDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEE 300
Query: 91 SIVQTDQPGTVVF 103
+ + V+F
Sbjct: 301 EEEEEEAAPDVIF 313
Score = 32.0 bits (71), Expect = 0.16
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 30 SDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNK 86
S D + D + ++K +L + +EE EEEEEEEE +++++++ ++ +
Sbjct: 232 SQDLCPQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEE 288
Score = 30.4 bits (67), Expect = 0.48
Identities = 18/79 (22%), Positives = 41/79 (51%)
Query: 8 ENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEE 67
E VE+ + + P+ S+++ K+ E + E ++ + +EE EEEEE
Sbjct: 223 EVVEVTTERSQDLCPQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEE 282
Query: 68 EEENTLSQKKKKKKPQQNK 86
EEE +++++++ ++ +
Sbjct: 283 EEEEEEEEEEEEEEEEEEE 301
>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
Length = 587
Score = 36.6 bits (83), Expect = 0.007
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 38 STDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDS 91
S DEDE + E ++ + EEE +EEEEEEE +++ +++ Q K T S
Sbjct: 358 SDDEDEEEEEEGEEEEEEAEEEEEEDEEEEEEEEEEEEEEPQQRGQGEKSATPS 411
Score = 35.0 bits (79), Expect = 0.019
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 20/118 (16%)
Query: 1 MSDKRGFENVELG--------------VIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDG 46
M+DK E ++L V++G A L +D +E +E+E +
Sbjct: 317 MADKAELEKLDLNGNTLGEEGCEQLQEVLEGFNMAKVLASLSDDEDEEEEEEGEEEEEEA 376
Query: 47 LERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQTDQPGTVVFS 104
E ++ + EEE EEEEEEE Q +K P + L + T +P V+ S
Sbjct: 377 EEEEE--EDEEEEEEEEEEEEEEPQQRGQGEKSATPSRKILDPN----TGEPAPVLSS 428
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 36.6 bits (83), Expect = 0.007
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 8 ENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEE 67
E E ++ G+K P++ + + +DE+E ER++ D EGEE+EE
Sbjct: 511 EKKENELLLGRKNTPKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCD--SEGEEDEE 568
Query: 68 EEENTLSQKKKKKKPQQNKLQ 88
+ E L+ K K K + K Q
Sbjct: 569 DMEPCLTGTKVKVKYGRGKTQ 589
Score = 27.3 bits (59), Expect = 4.0
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 ENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEE 67
E +EL +G++++ R + + + +E + D+ + + E KDV + E+ E E
Sbjct: 460 EEIELKSPRGRRRIARD-VNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELL 518
Query: 68 EEENTLSQKKKKKKPQQNKLQTDS 91
++K+KK +Q DS
Sbjct: 519 LGRKNTPKQKEKKIKKQEDSDKDS 542
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 36.6 bits (83), Expect = 0.007
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 8 ENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEE 67
E E ++ G+K P++ + + +DE+E ER++ D EGEE+EE
Sbjct: 511 EKKENELLLGRKNTPKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCD--SEGEEDEE 568
Query: 68 EEENTLSQKKKKKKPQQNKLQ 88
+ E L+ K K K + K Q
Sbjct: 569 DMEPCLTGTKVKVKYGRGKTQ 589
Score = 27.3 bits (59), Expect = 4.0
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 ENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEE 67
E +EL +G++++ R + + + +E + D+ + + E KDV + E+ E E
Sbjct: 460 EEIELKSPRGRRRIARD-VNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELL 518
Query: 68 EEENTLSQKKKKKKPQQNKLQTDS 91
++K+KK +Q DS
Sbjct: 519 LGRKNTPKQKEKKIKKQEDSDKDS 542
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 36.6 bits (83), Expect = 0.007
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 8 ENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEE 67
E E ++ G+K P++ + + +DE+E ER++ D EGEE+EE
Sbjct: 511 EKKENELLLGRKNTPKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCD--SEGEEDEE 568
Query: 68 EEENTLSQKKKKKKPQQNKLQ 88
+ E L+ K K K + K Q
Sbjct: 569 DMEPCLTGTKVKVKYGRGKTQ 589
Score = 27.3 bits (59), Expect = 4.0
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 8 ENVELGVIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEE 67
E +EL +G++++ R + + + +E + D+ + + E KDV + E+ E E
Sbjct: 460 EEIELKSPRGRRRIARD-VNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELL 518
Query: 68 EEENTLSQKKKKKKPQQNKLQTDS 91
++K+KK +Q DS
Sbjct: 519 LGRKNTPKQKEKKIKKQEDSDKDS 542
>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
Length = 1184
Score = 36.2 bits (82), Expect = 0.009
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 31 DDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEEN 71
D +E +EDE D + +DV + EEE EEEEEEEEN
Sbjct: 128 DREEEEEIEEEDEDDDEDGEDVEDEEEEEEEEEEEEEEEEN 168
Score = 35.8 bits (81), Expect = 0.011
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 31 DDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTD 90
D+ ++ D +E + +E +D D E+ +EEEEEEE +++++ + Q
Sbjct: 119 DEDEEDEEGDREEEEEIEEEDEDDDEDGEDVEDEEEEEEEEEEEEEEEENEDHQMNCHNT 178
Query: 91 SIVQTDQPGTVVFSSFGNLNFEMEGDSEVIMESKQNL 127
I+Q + N N E + E++ +S NL
Sbjct: 179 RIMQDTEKD-------DNNNDEYDNYDELVAKSLLNL 208
Score = 27.7 bits (60), Expect = 3.1
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 40 DEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQTDQ 97
D VD + D +D +EE E EE E+N + ++ + ++ + + I + D+
Sbjct: 83 DSSSVDECDDSDGTEDMDEKEEDEGEEYSEDNDEPGDEDEEDEEGDREEEEEIEEEDE 140
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 36.2 bits (82), Expect = 0.009
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 16 QGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQ 75
+GKKK ++ F DD +KE E G++ + P E EEE +
Sbjct: 41 KGKKKKEKKKQDFDEDDILKELEELSLEAQGIKADRETVAVKPTENNEEE-------FTS 93
Query: 76 KKKKKKPQQNKLQT 89
K KKKK Q+ K Q+
Sbjct: 94 KDKKKKGQKGKKQS 107
Score = 33.1 bits (74), Expect = 0.073
Identities = 18/78 (23%), Positives = 40/78 (51%)
Query: 18 KKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKK 77
KKK P +A + + + + +E+ E + + + E + +EEE E+ +KK
Sbjct: 332 KKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEEERLEQEKRERKK 391
Query: 78 KKKKPQQNKLQTDSIVQT 95
+K+K ++ +L+ + + T
Sbjct: 392 QKEKERKERLKKEGKLLT 409
Score = 32.3 bits (72), Expect = 0.13
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 57 DPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTD 90
+PEEE EEEEEEEE+ S+++++++ + + D
Sbjct: 530 NPEEEEEEEEEEEEDEESEEEEEEEGESEGSEGD 563
Score = 30.4 bits (67), Expect = 0.48
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 34 MKEYSTDEDEVDGLERKDVLPTLDPEEEGEEE----EEEEENTLSQKKK----KKKPQQN 85
+KE +E+E + E +D + EEEGE E +EE+E +K KKP +
Sbjct: 527 VKENPEEEEEEEEEEEEDEESEEEEEEEGESEGSEGDEEDEKVSDEKDSGKTLDKKPSK- 585
Query: 86 KLQTDSIVQTDQPGT 100
++ +DS +D T
Sbjct: 586 EMSSDSEYDSDDDRT 600
Score = 28.1 bits (61), Expect = 2.4
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 18 KKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEE--------- 68
KKK ++ ++ KE + ++ L L EEE ++ EEE
Sbjct: 313 KKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEEL 372
Query: 69 -----EENTLSQKKKKKKPQQNK 86
EE L Q+K+++K Q+ K
Sbjct: 373 EAKRKEEERLEQEKRERKKQKEK 395
Score = 26.9 bits (58), Expect = 5.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 35 KEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQ 94
K + +D++D L L E EG +E+E S+ KKKK+ ++ D I++
Sbjct: 8 KSEDSTKDDID-------LDALAAEIEGAGAAKEQEPQKSKGKKKKEKKKQDFDEDDILK 60
Score = 26.9 bits (58), Expect = 5.3
Identities = 15/70 (21%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 16 QGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTL-DPEEEGEEEEEEEENTLS 74
Q K+K +R F + + + D + E K PT + + EG++++++++
Sbjct: 266 QSKQKESQRK--FEEETVKSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKDKKKKKG 323
Query: 75 QKKKKKKPQQ 84
+K++K+K ++
Sbjct: 324 EKEEKEKEKK 333
Score = 26.6 bits (57), Expect = 6.9
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 20 KVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKK 79
K+P++A K ++EDE + + K+ E G+E +E L +K +
Sbjct: 145 KLPKKAKGKAQKSNKKWDGSEEDEDNSKKIKERSRINSSGESGDESDE----FLQSRKGQ 200
Query: 80 KKPQQNK 86
KK Q+NK
Sbjct: 201 KKNQKNK 207
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 35.8 bits (81), Expect = 0.011
Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 29 VSDDTMKEYSTDEDE--VDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNK 86
V + +E+ ++E E +D LE+++ L + + EE EEEE EEE +++++K+ ++ +
Sbjct: 2217 VDEVESEEHFSEEMESLLDELEKQESLSSEEEEEREEEEEREEEEVREEEEERKEEEEGE 2276
Score = 35.0 bits (79), Expect = 0.019
Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 38 STDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQTDQ 97
S +E+E + E ++ + EEE +EEEE EE + +++++KK ++ + + + + + ++
Sbjct: 2245 SEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQVEKEEEEKKKKKKEKKKEEVQEKEE 2304
Query: 98 PGTVVFSSFGNLNFEMEGDSEVIMESKQNLELSHSLLSE 136
VF + E E +S + ++ E S SL E
Sbjct: 2305 ----VFEEKEEIMSEEETES---LSDEEEEEESCSLEEE 2336
Score = 33.9 bits (76), Expect = 0.043
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 35 KEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQ 94
+E +E+E + E ++ EEEGEE++ E+E +KKKK+K ++ + + + +
Sbjct: 2248 EEEREEEEEREEEEVREEEEERKEEEEGEEKQVEKEEEEKKKKKKEKKKEEVQEKEEVFE 2307
Score = 29.3 bits (64), Expect = 1.1
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 35 KEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTDSIVQ 94
KE E+E L RK LD EEEG EEEE L ++ +K+K + +
Sbjct: 2156 KEEKMTEEE-SKLARKHSEVILDDEEEGGIEEEEVIPFLKRRWRKRKEAK---------R 2205
Query: 95 TDQPGTVVFSSFGNLNFEMEGDSEVIMESKQNLELSHSLLSE 136
D+P S + E E SE + LE SL SE
Sbjct: 2206 GDKPKEKFSSQVDEVESE-EHFSEEMESLLDELEKQESLSSE 2246
Score = 29.3 bits (64), Expect = 1.1
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 32 DTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEE------EENTLSQKKKKKKPQQN 85
+ + S++E+E E + + EEE +EEEE E+ +KKKKK+ ++
Sbjct: 2238 EKQESLSSEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQVEKEEEEKKKKKKEKKKE 2297
Query: 86 KLQTDSIVQTDQPGTVVFSSFGNLNFEMEGDSEVIMESKQNLE 128
++Q V ++ + +L+ E E + +E + + E
Sbjct: 2298 EVQEKEEVFEEKEEIMSEEETESLSDEEEEEESCSLEEEVDRE 2340
Score = 26.6 bits (57), Expect = 6.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 42 DEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQ 88
+E + + ++ +L EEE EE EE +K+ KK +Q KLQ
Sbjct: 2307 EEKEEIMSEEETESLSDEEEEEESCSLEEEVDREKEILKKEKQFKLQ 2353
>gi|21735569 claspin [Homo sapiens]
Length = 1339
Score = 35.8 bits (81), Expect = 0.011
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 28 FVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKL 87
F ++ +E TDE E DG E+ + + EE EE+EEEEE +Q+ + ++
Sbjct: 628 FEEEEEEEEEMTDESEEDGEEKVEKEEKEEELEEEEEKEEEEEEEGNQETAEFLLSSEEI 687
Query: 88 QTDSIVQTDQPGTVVFSSFG 107
+T + D+ S G
Sbjct: 688 ETKDEKEMDKENNDGSSEIG 707
Score = 30.4 bits (67), Expect = 0.48
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 48 ERKDVLPTLDPEEEGEEEEEEEENTLSQK--------KKKKKPQQNKLQTDSIVQTDQPG 99
+++ L LD E+ EEEEEEEE + +K++K ++ + + + + ++ G
Sbjct: 614 QKRQALFKLDNEDGFEEEEEEEEEMTDESEEDGEEKVEKEEKEEELEEEEEKEEEEEEEG 673
Query: 100 TVVFSSFGNLNFEMEGDSEVIMESKQN 126
+ F + E+E E M+ + N
Sbjct: 674 NQETAEFLLSSEEIETKDEKEMDKENN 700
Score = 29.6 bits (65), Expect = 0.81
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 40 DEDEVDGLERKDVLPTLDPEEEGEE--EEEEEENTLSQKKKKKKPQQNK 86
+ED + E ++ T + EE+GEE E+EE+E L ++++K++ ++ +
Sbjct: 624 NEDGFEEEEEEEEEMTDESEEDGEEKVEKEEKEEELEEEEEKEEEEEEE 672
>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
Length = 1646
Score = 35.8 bits (81), Expect = 0.011
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 6/50 (12%)
Query: 38 STDEDEVDGL-ERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNK 86
S +E+ V G E+K+ + EEE E+EEEEEE L ++K++K+ Q+ +
Sbjct: 890 SLNEENVKGQGEKKE-----ESEEEDEKEEEEEEEKLEEEKEEKEAQEEQ 934
Score = 29.3 bits (64), Expect = 1.1
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 14 VIQGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVL-PTLDPEE---EGEEEEEEE 69
V+ +KK P A + D KE S E +ER+ L P+L+ E +GE++EE E
Sbjct: 852 VLGQQKKSPLHAKM----DESKEGSIQGLEEMQVEREGSLNPSLNEENVKGQGEKKEESE 907
Query: 70 ENTLSQKKKKKKPQQNKLQTDSIVQTDQPGTVVFSSFGNLNFEMEGDSEVIMESKQNLEL 129
E + +K+++ ++ KL+ + + Q S G + EG E+ E ++ +
Sbjct: 908 E----EDEKEEEEEEEKLEEEKEEKEAQEEQESL-SVGEEEDKEEGLEEIYYEDMESFTI 962
Query: 130 S 130
S
Sbjct: 963 S 963
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 35.4 bits (80), Expect = 0.015
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 57 DPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQT--------DSIVQTDQPGTVVFSSFGN 108
+ EEE EEEEEEEE +++++ PQ +T + +++ QP SFG+
Sbjct: 1136 EEEEEEEEEEEEEEEEAEEEEEELPPQYFSSETSGSCALNPEEVLEQPQP-----LSFGH 1190
Query: 109 LNFEMEGDSEVIMESK 124
L +G V E +
Sbjct: 1191 LEGSRQGSQSVPAEQE 1206
>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
Length = 356
Score = 35.4 bits (80), Expect = 0.015
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 31 DDTMKEYSTDEDEV-DGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKL 87
+D ++ + +ED + +G E +D +E+ EEEEEEEE QK K++ P++ K+
Sbjct: 40 EDDLEAMNAEEDSLRNGGEEED------EDEDLEEEEEEEEEDDDQKPKRRGPKKKKM 91
Score = 32.7 bits (73), Expect = 0.096
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 16 QGKKKVPRRAILFVSDDTMKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQ 75
+ KK + +D+++ +EDE + LE EEE EEEE++++ +
Sbjct: 35 EADKKEDDLEAMNAEEDSLRNGGEEEDEDEDLE----------EEEEEEEEDDDQKPKRR 84
Query: 76 KKKKKKPQQNKLQ 88
KKKK + +L+
Sbjct: 85 GPKKKKMTKARLE 97
>gi|155722990 solute carrier family 4 (anion exchanger), member 1,
adaptor protein [Homo sapiens]
Length = 796
Score = 35.4 bits (80), Expect = 0.015
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 12/65 (18%)
Query: 48 ERKDVLPTL-----DPEEEGEEEEEEEENTLSQKKKKKKPQ-------QNKLQTDSIVQT 95
+R ++ PTL +PE E EEEEEEEE ++ +KKK + Q +++ ++ VQ
Sbjct: 630 KRPELPPTLMRMKDEPEVEEEEEEEEEEEKEKEEHEKKKLEDGSLSRPQPEIEPEAAVQE 689
Query: 96 DQPGT 100
+P T
Sbjct: 690 MRPPT 694
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 35.4 bits (80), Expect = 0.015
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 11/57 (19%)
Query: 34 MKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTD 90
MKE DE++ D D EEGEEEEEEEE L +K+K+ + + + D
Sbjct: 222 MKEEIQDEEDDD-----------DYVEEGEEEEEEEEGGLRGEKRKRDAEDDGEEED 267
Score = 29.6 bits (65), Expect = 0.81
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 28 FVSDDTMKEYSTDEDEVDG------LERKDVLPTLDPEEEGEEEEEEEEN 71
F +D S +ED+ DG E + P EEE EEEEEE+E+
Sbjct: 148 FDQEDNEAPDSEEEDDEDGDEDDEEEEENEAGPPEGYEEEEEEEEEEDED 197
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 35.4 bits (80), Expect = 0.015
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 11/57 (19%)
Query: 34 MKEYSTDEDEVDGLERKDVLPTLDPEEEGEEEEEEEENTLSQKKKKKKPQQNKLQTD 90
MKE DE++ D D EEGEEEEEEEE L +K+K+ + + + D
Sbjct: 181 MKEEIQDEEDDD-----------DYVEEGEEEEEEEEGGLRGEKRKRDAEDDGEEED 226
Score = 29.6 bits (65), Expect = 0.81
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 28 FVSDDTMKEYSTDEDEVDG------LERKDVLPTLDPEEEGEEEEEEEEN 71
F +D S +ED+ DG E + P EEE EEEEEE+E+
Sbjct: 107 FDQEDNEAPDSEEEDDEDGDEDDEEEEENEAGPPEGYEEEEEEEEEEDED 156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.303 0.126 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,509,187
Number of Sequences: 37866
Number of extensions: 288258
Number of successful extensions: 9631
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 300
Number of HSP's that attempted gapping in prelim test: 3701
Number of HSP's gapped (non-prelim): 3444
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.