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Search of human proteins with 239742221
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742221 PREDICTED: hypothetical protein XP_002342458 [Homo
sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753756 PREDICTED: similar to hCG1776279 [Homo sapiens] 275 6e-75
gi|239748324 PREDICTED: similar to hCG1776279 [Homo sapiens] 275 6e-75
gi|239742221 PREDICTED: hypothetical protein XP_002342458 [Homo ... 275 6e-75
gi|17105394 ribosomal protein L23a [Homo sapiens] 118 2e-27
gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo ... 68 2e-12
gi|239749228 PREDICTED: hypothetical protein XP_002346971 [Homo ... 48 2e-06
gi|239743319 PREDICTED: hypothetical protein XP_002342821 [Homo ... 48 2e-06
gi|110735439 Werner syndrome protein [Homo sapiens] 31 0.33
gi|169218196 PREDICTED: similar to Werner syndrome ATP-dependent... 31 0.33
gi|239757289 PREDICTED: hypothetical protein [Homo sapiens] 30 0.43
gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo ... 30 0.43
gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo ... 30 0.43
gi|133908641 myosin binding protein C, fast type [Homo sapiens] 30 0.43
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 30 0.57
gi|71834346 sterile alpha motif domain containing 5 [Homo sapiens] 30 0.74
gi|148612879 polyhomeotic like 3 [Homo sapiens] 29 1.3
gi|18252778 ankyrin repeat and SOCS box-containing protein 2 [Ho... 29 1.3
gi|94966757 protein disulfide isomerase A2 [Homo sapiens] 28 1.6
gi|28872803 myeloid translocation gene on chromosome 16 isoform ... 28 1.6
gi|126116589 fibrocystin L [Homo sapiens] 28 1.6
gi|87299628 biorientation of chromosomes in cell division 1-like... 28 2.2
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 28 2.8
gi|4885381 histone cluster 1, H1b [Homo sapiens] 28 2.8
gi|109637791 transcription factor-like nuclear regulator [Homo s... 28 2.8
gi|191252814 RIMS binding protein 3B [Homo sapiens] 27 4.8
gi|191252806 RIMS binding protein 3C [Homo sapiens] 27 4.8
gi|217330574 EH domain binding protein 1 isoform 3 [Homo sapiens] 27 4.8
gi|217330572 EH domain binding protein 1 isoform 3 [Homo sapiens] 27 4.8
gi|217330570 EH domain binding protein 1 isoform 2 [Homo sapiens] 27 4.8
gi|217330568 EH domain binding protein 1 isoform 1 [Homo sapiens] 27 4.8
>gi|239753756 PREDICTED: similar to hCG1776279 [Homo sapiens]
Length = 133
Score = 275 bits (704), Expect = 6e-75
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIHIWWPKTLRHH 60
MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIHIWWPKTLRHH
Sbjct: 1 MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIHIWWPKTLRHH 60
Query: 61 RGAIGTAGEAAMKTEGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNTEEEGMCPLAPD 120
RGAIGTAGEAAMKTEGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNTEEEGMCPLAPD
Sbjct: 61 RGAIGTAGEAAMKTEGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNTEEEGMCPLAPD 120
Query: 121 DHALDVANKIGII 133
DHALDVANKIGII
Sbjct: 121 DHALDVANKIGII 133
>gi|239748324 PREDICTED: similar to hCG1776279 [Homo sapiens]
Length = 133
Score = 275 bits (704), Expect = 6e-75
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIHIWWPKTLRHH 60
MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIHIWWPKTLRHH
Sbjct: 1 MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIHIWWPKTLRHH 60
Query: 61 RGAIGTAGEAAMKTEGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNTEEEGMCPLAPD 120
RGAIGTAGEAAMKTEGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNTEEEGMCPLAPD
Sbjct: 61 RGAIGTAGEAAMKTEGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNTEEEGMCPLAPD 120
Query: 121 DHALDVANKIGII 133
DHALDVANKIGII
Sbjct: 121 DHALDVANKIGII 133
>gi|239742221 PREDICTED: hypothetical protein XP_002342458 [Homo
sapiens]
Length = 133
Score = 275 bits (704), Expect = 6e-75
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIHIWWPKTLRHH 60
MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIHIWWPKTLRHH
Sbjct: 1 MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIHIWWPKTLRHH 60
Query: 61 RGAIGTAGEAAMKTEGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNTEEEGMCPLAPD 120
RGAIGTAGEAAMKTEGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNTEEEGMCPLAPD
Sbjct: 61 RGAIGTAGEAAMKTEGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNTEEEGMCPLAPD 120
Query: 121 DHALDVANKIGII 133
DHALDVANKIGII
Sbjct: 121 DHALDVANKIGII 133
>gi|17105394 ribosomal protein L23a [Homo sapiens]
Length = 156
Score = 118 bits (295), Expect = 2e-27
Identities = 79/156 (50%), Positives = 94/156 (60%), Gaps = 23/156 (14%)
Query: 1 MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVH-------RTKPPSHLPIPQRPVIHIWW 53
MA KAKKEAPAPP+A+AK K L+AKKAVLKGVH RT P P R +
Sbjct: 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKY 60
Query: 54 PKTLRHHRGAIG--------TAGEAAMK--TEGNTLVFTVDVKANKHQMEQAMKEFHDIC 103
P+ R + E+AMK + NTLVF VDVKANKHQ++QA+K+ +DI
Sbjct: 61 PRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDID 120
Query: 104 VAKVNT------EEEGMCPLAPDDHALDVANKIGII 133
VAKVNT E++ LAPD ALDVANKIGII
Sbjct: 121 VAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
>gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo
sapiens]
Length = 152
Score = 67.8 bits (164), Expect = 2e-12
Identities = 41/73 (56%), Positives = 48/73 (65%), Gaps = 7/73 (9%)
Query: 66 TAGEAAMKTE-GNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNT------EEEGMCPLA 118
TA A KTE NTLVFTVDVKA KHQ+ QA+K+ +D VAKV T E++ LA
Sbjct: 72 TAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKEKKAYVRLA 131
Query: 119 PDDHALDVANKIG 131
PD ALDVA K+G
Sbjct: 132 PDYDALDVATKLG 144
>gi|239749228 PREDICTED: hypothetical protein XP_002346971 [Homo
sapiens]
Length = 87
Score = 48.1 bits (113), Expect = 2e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 75 EGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVN 108
+ NTLVFTVDVKA KHQ++QA+K+ +D VAKV+
Sbjct: 6 DNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVH 39
>gi|239743319 PREDICTED: hypothetical protein XP_002342821 [Homo
sapiens]
Length = 87
Score = 48.1 bits (113), Expect = 2e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 75 EGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVN 108
+ NTLVFTVDVKA KHQ++QA+K+ +D VAKV+
Sbjct: 6 DNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVH 39
>gi|110735439 Werner syndrome protein [Homo sapiens]
Length = 1432
Score = 30.8 bits (68), Expect = 0.33
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 46 RPVIHIWWPKTLRHHRGAIGTAGEAAMKTEGNTLVFTVDVKANKHQMEQAMKE 98
R VIH PK + + IG AG +++ + L D+ N+H + + E
Sbjct: 834 RQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNE 886
>gi|169218196 PREDICTED: similar to Werner syndrome ATP-dependent
helicase, partial [Homo sapiens]
Length = 1140
Score = 30.8 bits (68), Expect = 0.33
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 46 RPVIHIWWPKTLRHHRGAIGTAGEAAMKTEGNTLVFTVDVKANKHQMEQAMKE 98
R VIH PK + + IG AG +++ + L D+ N+H + + E
Sbjct: 542 RQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNE 594
>gi|239757289 PREDICTED: hypothetical protein [Homo sapiens]
Length = 545
Score = 30.4 bits (67), Expect = 0.43
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 36 KPPSHLPIPQRPVIHIWWPKTLRHHRGAIGTAGEAAMKTE 75
+P SH + +H WP++ +H RG +G GE+A + +
Sbjct: 505 QPRSHTQVKSGGPLHTPWPQSSKHLRGRVG-GGESARQAQ 543
>gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo
sapiens]
Length = 291
Score = 30.4 bits (67), Expect = 0.43
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 36 KPPSHLPIPQRPVIHIWWPKTLRHHRGAIGTAGEAAMKTE 75
+P SH + +H WP++ +H RG +G GE+A + +
Sbjct: 251 QPRSHTQVKSGGPLHTPWPQSSKHLRGRVG-GGESARQAQ 289
>gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo
sapiens]
Length = 291
Score = 30.4 bits (67), Expect = 0.43
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 36 KPPSHLPIPQRPVIHIWWPKTLRHHRGAIGTAGEAAMKTE 75
+P SH + +H WP++ +H RG +G GE+A + +
Sbjct: 251 QPRSHTQVKSGGPLHTPWPQSSKHLRGRVG-GGESARQAQ 289
>gi|133908641 myosin binding protein C, fast type [Homo sapiens]
Length = 1141
Score = 30.4 bits (67), Expect = 0.43
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 83 VDVKANKHQMEQAMKEFHDICVAKVNTEEEGMCPLAPDDHALDVANKIGII 133
V+V+ +K + FH + + V E+EG PD +AL ++ K+ +
Sbjct: 476 VEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 526
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 30.0 bits (66), Expect = 0.57
Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 26/132 (19%)
Query: 9 APAPPQAKAKVKTLRAKKAV---LKGVHRTKPPSHLPIPQRPVIHIWWPKTLRHHRGAIG 65
AP P A V+T R +K G PP H P P+ P R G+
Sbjct: 728 APPAPSPAAPVRTRRRRKLYELHAAGAPPPPPPGHAPAPESP----------RPGSGSGS 777
Query: 66 TAGEAAMKTEGNTLVFTVDVKANKHQ-----MEQAMKEFHDICVAKVN--------TEEE 112
G A ++ G +D+ + A+ ++H+ +V+ ++
Sbjct: 778 GPGLAPARSPGPAADGPIDLSKKPRRPLPGAPAPALADYHECTACRVSFHSLEAYLAHKK 837
Query: 113 GMCPLAPDDHAL 124
CP AP AL
Sbjct: 838 YSCPAAPPPGAL 849
>gi|71834346 sterile alpha motif domain containing 5 [Homo sapiens]
Length = 173
Score = 29.6 bits (65), Expect = 0.74
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 16 KAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIH--IWWPKT 56
K K+K + K V G+H +KPP +P ++ + WPK+
Sbjct: 127 KLKLKIMIRDKLVRDGIHLSKPPYSRKVPMAGILEYLMNWPKS 169
>gi|148612879 polyhomeotic like 3 [Homo sapiens]
Length = 995
Score = 28.9 bits (63), Expect = 1.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 38 PSHLPIPQRPVIHI 51
PSHLP+P PV+HI
Sbjct: 465 PSHLPLPASPVVHI 478
>gi|18252778 ankyrin repeat and SOCS box-containing protein 2 [Homo
sapiens]
Length = 587
Score = 28.9 bits (63), Expect = 1.3
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 7 KEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIHIWWPKT 56
KE PP+ A + LR +KA+ G +R K LP+P R + ++ + T
Sbjct: 539 KEKAEPPRPLAHLCRLRVRKAI--GKYRIKLLDTLPLPGRLIRYLKYENT 586
>gi|94966757 protein disulfide isomerase A2 [Homo sapiens]
Length = 525
Score = 28.5 bits (62), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 55 KTLRHHRGAIGTAGEAAMKTEGNTLVFTVDVKA-NKHQME 93
+TL HR + GEAA + G L VDV A N+H ++
Sbjct: 285 QTLAAHRELLAGFGEAAPRFRGQVLFVVVDVAADNEHVLQ 324
>gi|28872803 myeloid translocation gene on chromosome 16 isoform
MTG16a [Homo sapiens]
Length = 653
Score = 28.5 bits (62), Expect = 1.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 6 KKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIP 44
+K PAP KAK + A +K R+ PPS P P
Sbjct: 46 RKGGPAPVDRKAKASAMPDSPAEVKTQPRSTPPSMPPPP 84
>gi|126116589 fibrocystin L [Homo sapiens]
Length = 4243
Score = 28.5 bits (62), Expect = 1.6
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 13 PQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIP-QRPVIHIWWP-----KTLRHHRGAIGT 66
P K V +A +L+ PPS PIP +RP + W ++ R + +
Sbjct: 2991 PDVKDVVINFQAYCCILQDCFPVHPPSRKPIPKKRPATYNLWSNDSFWQSSRENNYTVPH 3050
Query: 67 AGEAAMKTEGNTLVFTVDVKANKHQMEQAMKEFHD 101
G + EG +V +D+ + + + + E D
Sbjct: 3051 PGANVIIPEGTWIVADIDMPSMERLIIWGVLELED 3085
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 28.1 bits (61), Expect = 2.2
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 83 VDVKAN---KHQMEQAMKEFHDICVAKVNTEEEGMCPLAPDDHALDVA 127
VD K N + Q+E+A+ EF +A +N +EEG APDD D +
Sbjct: 139 VDPKINHTFRPQVEKAVHEF----LATLNHKEEGSGNTAPDDEKPDTS 182
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 27.7 bits (60), Expect = 2.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 5 AKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPS 39
AK+EA +PP+AK+ K A +K + K P+
Sbjct: 554 AKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPA 588
>gi|4885381 histone cluster 1, H1b [Homo sapiens]
Length = 226
Score = 27.7 bits (60), Expect = 2.8
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 2 ALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPS 39
A KAKK A A P+ KAK K AKKAV K + K P+
Sbjct: 128 AAKAKKPAGATPK-KAK-KAAGAKKAVKKTPKKAKKPA 163
>gi|109637791 transcription factor-like nuclear regulator [Homo
sapiens]
Length = 2624
Score = 27.7 bits (60), Expect = 2.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 75 EGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNTEEEGMCPLAPD 120
+G ++ V++ E++ +E H + VA V + E G C L D
Sbjct: 2175 KGTSISSEVNLTERNENQEESSQEVHMLSVAPVASSETGPCTLGLD 2220
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 26.9 bits (58), Expect = 4.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 4 KAKKEAPAPPQAKAKVKTLRAKKAVLKGVHR 34
K + A P QA KVK L+ K+A L G+ R
Sbjct: 399 KQLRRAGCPYQADEKVKRLKVKRAELTGLAR 429
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 26.9 bits (58), Expect = 4.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 4 KAKKEAPAPPQAKAKVKTLRAKKAVLKGVHR 34
K + A P QA KVK L+ K+A L G+ R
Sbjct: 399 KQLRRAGCPYQADEKVKRLKVKRAELTGLAR 429
>gi|217330574 EH domain binding protein 1 isoform 3 [Homo sapiens]
Length = 1160
Score = 26.9 bits (58), Expect = 4.8
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 4 KAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIH----------IWW 53
+ K++APAPP K L + V G + P PIP PV+ +W
Sbjct: 361 RVKRKAPAPPVLSPKTGVLN-ENTVSAGKDLSTSPKPSPIPS-PVLGRKPNASQSLLVWC 418
Query: 54 PKTLRHHRG 62
+ +++RG
Sbjct: 419 KEVTKNYRG 427
>gi|217330572 EH domain binding protein 1 isoform 3 [Homo sapiens]
Length = 1160
Score = 26.9 bits (58), Expect = 4.8
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 4 KAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIH----------IWW 53
+ K++APAPP K L + V G + P PIP PV+ +W
Sbjct: 361 RVKRKAPAPPVLSPKTGVLN-ENTVSAGKDLSTSPKPSPIPS-PVLGRKPNASQSLLVWC 418
Query: 54 PKTLRHHRG 62
+ +++RG
Sbjct: 419 KEVTKNYRG 427
>gi|217330570 EH domain binding protein 1 isoform 2 [Homo sapiens]
Length = 1196
Score = 26.9 bits (58), Expect = 4.8
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 4 KAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIH----------IWW 53
+ K++APAPP K L + V G + P PIP PV+ +W
Sbjct: 361 RVKRKAPAPPVLSPKTGVLN-ENTVSAGKDLSTSPKPSPIPS-PVLGRKPNASQSLLVWC 418
Query: 54 PKTLRHHRG 62
+ +++RG
Sbjct: 419 KEVTKNYRG 427
>gi|217330568 EH domain binding protein 1 isoform 1 [Homo sapiens]
Length = 1231
Score = 26.9 bits (58), Expect = 4.8
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 4 KAKKEAPAPPQAKAKVKTLRAKKAVLKGVHRTKPPSHLPIPQRPVIH----------IWW 53
+ K++APAPP K L + V G + P PIP PV+ +W
Sbjct: 396 RVKRKAPAPPVLSPKTGVLN-ENTVSAGKDLSTSPKPSPIPS-PVLGRKPNASQSLLVWC 453
Query: 54 PKTLRHHRG 62
+ +++RG
Sbjct: 454 KEVTKNYRG 462
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,381,846
Number of Sequences: 37866
Number of extensions: 238727
Number of successful extensions: 794
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 51
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.