Guide to the Human Genome
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Name: LOC100288551 Sequence: fasta or formatted (170aa) NCBI GI: 239742102
Description:

PREDICTED: hypothetical protein XP_002342436

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            23.5         40           4
 C cysteine            1.8          3           1
 D aspartate           1.2          2           1
 E glutamate           4.1          7           1
 F phenylalanine       6.5         11           2
 G glycine             8.2         14           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              0.6          1           1
 L leucine             9.4         16           2
 M methionine          1.2          2           1
 N asparagine          0.0          0           0
 P proline             7.1         12           1
 Q glutamine           0.0          0           0
 R arginine            0.6          1           1
 S serine             21.2         36           2
 T threonine           2.9          5           1
 V valine              9.4         16           3
 W tryptophan          2.4          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342436 
LOC100292252          1.000   PREDICTED: hypothetical protein 
LOC100290134          1.000   PREDICTED: hypothetical protein XP_002346595 
LOC100133915          0.091   PREDICTED: hypothetical protein 
FAM48B1               0.074   hypothetical protein LOC100130302 
SNAP91                0.054   synaptosomal-associated protein, 91kDa homolog 
NUP214                0.050   nucleoporin 214kDa 
MARCKS                0.047   myristoylated alanine-rich protein kinase C substra...
LOC100293501          0.047   PREDICTED: hypothetical protein 
KRTAP4-6              0.047   PREDICTED: keratin associated protein 4.6 
LOC100291178          0.047   PREDICTED: hypothetical protein XP_002347544 
LOC100289466          0.047   PREDICTED: hypothetical protein XP_002342181 
AMOT                  0.044   angiomotin isoform 2 
AMOT                  0.044   angiomotin isoform 1 
FAM71A                0.044   hypothetical protein LOC149647 
FOXD1                 0.040   forkhead box D1 
ITSN1                 0.040   intersectin 1 isoform ITSN-s 
ITSN1                 0.040   intersectin 1 isoform ITSN-l 
SOX4                  0.037   SRY (sex determining region Y)-box 4 
KRTAP4-9              0.034   PREDICTED: keratin associated protein 4-9 
SALL3                 0.034   sal-like 3 
MLL                   0.034   myeloid/lymphoid or mixed-lineage leukemia protein [...
GATA4                 0.034   GATA binding protein 4 
SOX1                  0.034   SRY (sex determining region Y)-box 1 
MUC5AC                0.034   mucin 5AC 
WNK1                  0.034   WNK lysine deficient protein kinase 1 
NR4A1                 0.034   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.034   nuclear receptor subfamily 4, group A, member 1 [Hom...
MUC5B                 0.034   mucin 5, subtype B, tracheobronchial 
C13orf18              0.034   hypothetical protein LOC80183 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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