Guide to the Human Genome
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Name: LOC100289466 Sequence: fasta or formatted (310aa) NCBI GI: 239741351
Description:

PREDICTED: hypothetical protein XP_002342181

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         40           2
 C cysteine            3.2         10           2
 D aspartate           1.0          3           1
 E glutamate           0.6          2           1
 F phenylalanine       3.5         11           2
 G glycine             9.0         28           3
 H histidine           2.3          7           2
 I isoleucine          1.0          3           1
 K lysine              1.9          6           1
 L leucine            10.0         31           2
 M methionine          1.3          4           1
 N asparagine          2.3          7           1
 P proline             7.1         22           1
 Q glutamine           3.5         11           1
 R arginine           11.3         35           3
 S serine             16.1         50           3
 T threonine           3.9         12           2
 V valine              5.2         16           1
 W tryptophan          2.9          9           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342181 
LOC100293501          1.000   PREDICTED: hypothetical protein 
LOC100291178          1.000   PREDICTED: hypothetical protein XP_002347544 
TNRC18                0.035   trinucleotide repeat containing 18 
TMPRSS13              0.026   transmembrane protease, serine 13 
LOC100131251          0.025   PREDICTED: hypothetical protein 
LOC100131251          0.025   PREDICTED: hypothetical protein 
SFRS2                 0.025   splicing factor, arginine/serine-rich 2 
PPRC1                 0.025   peroxisome proliferator-activated receptor gamma, co...
LOC100133756          0.025   PREDICTED: hypothetical protein, partial 
C10orf95              0.023   hypothetical protein LOC79946 
LOC100292227          0.023   PREDICTED: hypothetical protein 
LOC100292252          0.023   PREDICTED: hypothetical protein 
LOC100289692          0.023   PREDICTED: hypothetical protein XP_002347699 
LOC100290134          0.023   PREDICTED: hypothetical protein XP_002346595 
LOC100287811          0.023   PREDICTED: hypothetical protein XP_002344136 
LOC100288551          0.023   PREDICTED: hypothetical protein XP_002342436 
ZRANB2                0.023   zinc finger protein 265 isoform 1 
CHERP                 0.023   calcium homeostasis endoplasmic reticulum protein [...
LOC100291624          0.021   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.021   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.021   PREDICTED: hypothetical protein XP_002342583 
PNN                   0.021   pinin, desmosome associated protein 
TRIO                  0.021   triple functional domain (PTPRF interacting) 
ARL6IP4               0.021   SRp25 nuclear protein isoform 3 
SFRS7                 0.021   splicing factor, arginine/serine-rich 7 
SFRS16                0.020   splicing factor, arginine/serine-rich 16 
LOC100129500          0.020   PREDICTED: hypothetical protein isoform 1 
LOC100129500          0.020   PREDICTED: hypothetical protein isoform 2 
LOC100129500          0.020   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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