Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239741956

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741956 PREDICTED: hypothetical protein XP_002342400 [Homo
sapiens]
         (163 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753487 PREDICTED: hypothetical protein [Homo sapiens]           335   1e-92
gi|239748063 PREDICTED: hypothetical protein [Homo sapiens]           335   1e-92
gi|239741956 PREDICTED: hypothetical protein XP_002342400 [Homo ...   335   1e-92
gi|153945852 G7c protein [Homo sapiens]                                37   0.008
gi|157785645 SPEG complex locus [Homo sapiens]                         32   0.24 
gi|189181724 proteoglycan 4 isoform D [Homo sapiens]                   30   0.71 
gi|189181722 proteoglycan 4 isoform C [Homo sapiens]                   30   0.71 
gi|189181720 proteoglycan 4 isoform B [Homo sapiens]                   30   0.71 
gi|67190163 proteoglycan 4 isoform A [Homo sapiens]                    30   0.71 
gi|119943102 CREB binding protein isoform b [Homo sapiens]             30   0.71 
gi|119943104 CREB binding protein isoform a [Homo sapiens]             30   0.71 
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]                       30   0.71 
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]                       30   0.71 
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]                       30   0.71 
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]                       30   0.71 
gi|40068483 SET domain containing 3 isoform b [Homo sapiens]           30   0.92 
gi|40068481 SET domain containing 3 isoform a [Homo sapiens]           30   0.92 
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]     29   1.6  
gi|148596992 heart alpha-kinase [Homo sapiens]                         29   2.1  
gi|58743365 ring finger protein 157 [Homo sapiens]                     28   3.5  
gi|122937247 unc-13 homolog A [Homo sapiens]                           28   3.5  
gi|64084766 fidgetin [Homo sapiens]                                    28   4.6  
gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]                    28   4.6  
gi|221139921 EF-hand calcium binding domain 8 [Homo sapiens]           27   6.0  
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa...    27   6.0  
gi|92859618 sphingomyelin phosphodiesterase 2, neutral [Homo sap...    27   6.0  
gi|84626580 hypothetical protein LOC80178 [Homo sapiens]               27   6.0  
gi|27734775 hypothetical protein LOC286499 [Homo sapiens]              27   6.0  
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]            27   7.8  
gi|169160983 PREDICTED: hypothetical protein [Homo sapiens]            27   7.8  

>gi|239753487 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 163

 Score =  335 bits (858), Expect = 1e-92
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MAATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPG 60
           MAATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPG
Sbjct: 1   MAATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPG 60

Query: 61  TRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTTFTAQNHPARGSYHPCLTKWESEAQRG 120
           TRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTTFTAQNHPARGSYHPCLTKWESEAQRG
Sbjct: 61  TRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTTFTAQNHPARGSYHPCLTKWESEAQRG 120

Query: 121 KGVGLAKAMWWTSWGQSIYYVYESRSTVRLSGLGSQLCDLLAI 163
           KGVGLAKAMWWTSWGQSIYYVYESRSTVRLSGLGSQLCDLLAI
Sbjct: 121 KGVGLAKAMWWTSWGQSIYYVYESRSTVRLSGLGSQLCDLLAI 163


>gi|239748063 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 163

 Score =  335 bits (858), Expect = 1e-92
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MAATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPG 60
           MAATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPG
Sbjct: 1   MAATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPG 60

Query: 61  TRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTTFTAQNHPARGSYHPCLTKWESEAQRG 120
           TRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTTFTAQNHPARGSYHPCLTKWESEAQRG
Sbjct: 61  TRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTTFTAQNHPARGSYHPCLTKWESEAQRG 120

Query: 121 KGVGLAKAMWWTSWGQSIYYVYESRSTVRLSGLGSQLCDLLAI 163
           KGVGLAKAMWWTSWGQSIYYVYESRSTVRLSGLGSQLCDLLAI
Sbjct: 121 KGVGLAKAMWWTSWGQSIYYVYESRSTVRLSGLGSQLCDLLAI 163


>gi|239741956 PREDICTED: hypothetical protein XP_002342400 [Homo
           sapiens]
          Length = 163

 Score =  335 bits (858), Expect = 1e-92
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MAATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPG 60
           MAATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPG
Sbjct: 1   MAATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPG 60

Query: 61  TRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTTFTAQNHPARGSYHPCLTKWESEAQRG 120
           TRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTTFTAQNHPARGSYHPCLTKWESEAQRG
Sbjct: 61  TRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTTFTAQNHPARGSYHPCLTKWESEAQRG 120

Query: 121 KGVGLAKAMWWTSWGQSIYYVYESRSTVRLSGLGSQLCDLLAI 163
           KGVGLAKAMWWTSWGQSIYYVYESRSTVRLSGLGSQLCDLLAI
Sbjct: 121 KGVGLAKAMWWTSWGQSIYYVYESRSTVRLSGLGSQLCDLLAI 163


>gi|153945852 G7c protein [Homo sapiens]
          Length = 891

 Score = 37.0 bits (84), Expect = 0.008
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 73  PRTPTH--LIIMATRPAQQARHTTFTAQNHPARGSYHPCLTKWESEAQRGKGVGLAK-AM 129
           P  PTH  L ++ + PA Q RHTT T  + P   +  P  + +    Q   G GLA  + 
Sbjct: 815 PVPPTHAFLRLLVSAPAPQDRHTTPTGSSDPILTTATPAFSPFTLVTQGRAGAGLAAGSP 874

Query: 130 WWTSWG 135
           WW + G
Sbjct: 875 WWGTVG 880


>gi|157785645 SPEG complex locus [Homo sapiens]
          Length = 3267

 Score = 32.0 bits (71), Expect = 0.24
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 16/90 (17%)

Query: 2   AATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGT 61
           AA A   MA  T     A+ A++  + P     ST+  SS I+       ++E+ + P  
Sbjct: 786 AADAGSYMATATNELGQATCAASLTVRPGG---STSPFSSPIT-------SDEEYLSPPE 835

Query: 62  RIPVPGSSWSLPRTPTHLIIMATRPAQQAR 91
             P PG +W  PRTPT    M   P+Q  R
Sbjct: 836 EFPEPGETW--PRTPT----MKPSPSQNRR 859


>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
          Length = 1270

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 4   TAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRI 63
           T P + A  TK P   +        PK    +T    +  + K+PA +  ++      + 
Sbjct: 328 TTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKE 387

Query: 64  PVPGSSWSLPRT-----PTHLIIMATRPAQQARHTT 94
           P P ++ S P T     PT      T P + +  TT
Sbjct: 388 PAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTT 423



 Score = 28.5 bits (62), Expect = 2.7
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 4   TAPMKMAVNT-KSPLAASVASAQMMMPKNICCSTTNSSSVISE-------KKPADSAEEQ 55
           T P + A  T K P   ++ SA    PK    +TT S+    +       K+PA +  ++
Sbjct: 219 TTPKEPASTTPKEPTPTTIKSAPTT-PKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKE 277

Query: 56  EMQPGTRIPVPGSSWSLPRTP 76
                T+ P P ++ S P TP
Sbjct: 278 PAPTTTKEPAPTTTKSAPTTP 298



 Score = 27.7 bits (60), Expect = 4.6
 Identities = 17/75 (22%), Positives = 29/75 (38%)

Query: 2   AATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGT 61
           A T P + A  T    A +   +    PK    +T    +  + K+PA +  ++      
Sbjct: 271 APTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTP 330

Query: 62  RIPVPGSSWSLPRTP 76
           + P P +    P TP
Sbjct: 331 KEPAPTTKEPAPTTP 345


>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
          Length = 1311

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 4   TAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRI 63
           T P + A  TK P   +        PK    +T    +  + K+PA +  ++      + 
Sbjct: 369 TTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKE 428

Query: 64  PVPGSSWSLPRT-----PTHLIIMATRPAQQARHTT 94
           P P ++ S P T     PT      T P + +  TT
Sbjct: 429 PAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTT 464



 Score = 28.5 bits (62), Expect = 2.7
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 4   TAPMKMAVNT-KSPLAASVASAQMMMPKNICCSTTNSSSVISE-------KKPADSAEEQ 55
           T P + A  T K P   ++ SA    PK    +TT S+    +       K+PA +  ++
Sbjct: 260 TTPKEPASTTPKEPTPTTIKSAPTT-PKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKE 318

Query: 56  EMQPGTRIPVPGSSWSLPRTP 76
                T+ P P ++ S P TP
Sbjct: 319 PAPTTTKEPAPTTTKSAPTTP 339



 Score = 27.7 bits (60), Expect = 4.6
 Identities = 17/75 (22%), Positives = 29/75 (38%)

Query: 2   AATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGT 61
           A T P + A  T    A +   +    PK    +T    +  + K+PA +  ++      
Sbjct: 312 APTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTP 371

Query: 62  RIPVPGSSWSLPRTP 76
           + P P +    P TP
Sbjct: 372 KEPAPTTKEPAPTTP 386


>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
          Length = 1363

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 4   TAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRI 63
           T P + A  TK P   +        PK    +T    +  + K+PA +  ++      + 
Sbjct: 421 TTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKE 480

Query: 64  PVPGSSWSLPRT-----PTHLIIMATRPAQQARHTT 94
           P P ++ S P T     PT      T P + +  TT
Sbjct: 481 PAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTT 516



 Score = 28.5 bits (62), Expect = 2.7
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 4   TAPMKMAVNT-KSPLAASVASAQMMMPKNICCSTTNSSSVISE-------KKPADSAEEQ 55
           T P + A  T K P   ++ SA    PK    +TT S+    +       K+PA +  ++
Sbjct: 312 TTPKEPASTTPKEPTPTTIKSAPTT-PKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKE 370

Query: 56  EMQPGTRIPVPGSSWSLPRTP 76
                T+ P P ++ S P TP
Sbjct: 371 PAPTTTKEPAPTTTKSAPTTP 391



 Score = 27.7 bits (60), Expect = 4.6
 Identities = 17/75 (22%), Positives = 29/75 (38%)

Query: 2   AATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGT 61
           A T P + A  T    A +   +    PK    +T    +  + K+PA +  ++      
Sbjct: 364 APTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTP 423

Query: 62  RIPVPGSSWSLPRTP 76
           + P P +    P TP
Sbjct: 424 KEPAPTTKEPAPTTP 438


>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
          Length = 1404

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 4   TAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRI 63
           T P + A  TK P   +        PK    +T    +  + K+PA +  ++      + 
Sbjct: 462 TTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKE 521

Query: 64  PVPGSSWSLPRT-----PTHLIIMATRPAQQARHTT 94
           P P ++ S P T     PT      T P + +  TT
Sbjct: 522 PAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTT 557



 Score = 28.5 bits (62), Expect = 2.7
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 4   TAPMKMAVNT-KSPLAASVASAQMMMPKNICCSTTNSSSVISE-------KKPADSAEEQ 55
           T P + A  T K P   ++ SA    PK    +TT S+    +       K+PA +  ++
Sbjct: 353 TTPKEPASTTPKEPTPTTIKSAPTT-PKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKE 411

Query: 56  EMQPGTRIPVPGSSWSLPRTP 76
                T+ P P ++ S P TP
Sbjct: 412 PAPTTTKEPAPTTTKSAPTTP 432



 Score = 27.7 bits (60), Expect = 4.6
 Identities = 17/75 (22%), Positives = 29/75 (38%)

Query: 2   AATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGT 61
           A T P + A  T    A +   +    PK    +T    +  + K+PA +  ++      
Sbjct: 405 APTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTP 464

Query: 62  RIPVPGSSWSLPRTP 76
           + P P +    P TP
Sbjct: 465 KEPAPTTKEPAPTTP 479


>gi|119943102 CREB binding protein isoform b [Homo sapiens]
          Length = 2404

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 6   PMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRIPV 65
           P  M  +T + +A + A +Q + P+N   S++ + SV   + PA +   Q   PG  +P 
Sbjct: 735 PNMMGAHTNNMMAQAPAQSQFL-PQNQFPSSSGAMSVGMGQPPAQTGVSQGQVPGAALPN 793

Query: 66  P 66
           P
Sbjct: 794 P 794


>gi|119943104 CREB binding protein isoform a [Homo sapiens]
          Length = 2442

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 6   PMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRIPV 65
           P  M  +T + +A + A +Q + P+N   S++ + SV   + PA +   Q   PG  +P 
Sbjct: 773 PNMMGAHTNNMMAQAPAQSQFL-PQNQFPSSSGAMSVGMGQPPAQTGVSQGQVPGAALPN 831

Query: 66  P 66
           P
Sbjct: 832 P 832


>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
          Length = 844

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 28  MPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTHLIIMATRPA 87
           + K  C S ++SSS  SE+  + S+   E    +R     SS S P  P        RP 
Sbjct: 14  LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPPE-----PRPQ 68

Query: 88  QQARHTTFTAQNHPAR 103
           QQ +  +  A+   AR
Sbjct: 69  QQPQPRSPAARRAAAR 84


>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
          Length = 852

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 28  MPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTHLIIMATRPA 87
           + K  C S ++SSS  SE+  + S+   E    +R     SS S P  P        RP 
Sbjct: 14  LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPPE-----PRPQ 68

Query: 88  QQARHTTFTAQNHPAR 103
           QQ +  +  A+   AR
Sbjct: 69  QQPQPRSPAARRAAAR 84


>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
          Length = 858

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 28  MPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTHLIIMATRPA 87
           + K  C S ++SSS  SE+  + S+   E    +R     SS S P  P        RP 
Sbjct: 14  LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPPE-----PRPQ 68

Query: 88  QQARHTTFTAQNHPAR 103
           QQ +  +  A+   AR
Sbjct: 69  QQPQPRSPAARRAAAR 84


>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
          Length = 850

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 28  MPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTHLIIMATRPA 87
           + K  C S ++SSS  SE+  + S+   E    +R     SS S P  P        RP 
Sbjct: 14  LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPPE-----PRPQ 68

Query: 88  QQARHTTFTAQNHPAR 103
           QQ +  +  A+   AR
Sbjct: 69  QQPQPRSPAARRAAAR 84


>gi|40068483 SET domain containing 3 isoform b [Homo sapiens]
          Length = 296

 Score = 30.0 bits (66), Expect = 0.92
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 35  STTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTT 94
           S T +++ +S K+  +   E   +  +  P PG  W         ++   R  Q+    T
Sbjct: 12  SGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWE-EYVQIRTLVEKIRKKQKGLSVT 70

Query: 95  FTAQNHPARGSYHPCLTKWESE 116
           F  +    R  Y P L KW SE
Sbjct: 71  FDGK----REDYFPDLMKWASE 88


>gi|40068481 SET domain containing 3 isoform a [Homo sapiens]
          Length = 594

 Score = 30.0 bits (66), Expect = 0.92
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 35  STTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTT 94
           S T +++ +S K+  +   E   +  +  P PG  W         ++   R  Q+    T
Sbjct: 12  SGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWE-EYVQIRTLVEKIRKKQKGLSVT 70

Query: 95  FTAQNHPARGSYHPCLTKWESE 116
           F  +    R  Y P L KW SE
Sbjct: 71  FDGK----REDYFPDLMKWASE 88


>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
          Length = 1388

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 19/69 (27%), Positives = 30/69 (43%)

Query: 9   MAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRIPVPGS 68
           M+    S  A+ V SAQ+ M K      T S   ++++    +A  +   P  R P  G+
Sbjct: 450 MSTEQMSATASRVMSAQLTMAKTSGAMPTGSMKAVAKQYKRATASGKMSTPLRRAPTSGA 509

Query: 69  SWSLPRTPT 77
             + P T T
Sbjct: 510 MSTQPVTAT 518


>gi|148596992 heart alpha-kinase [Homo sapiens]
          Length = 2170

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 45   EKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPT--HLIIMATRPAQQARHTTFTAQNHPA 102
            +K P+ SA +    P +   +    W  P T T  +    ATR  +     T   + HPA
Sbjct: 961  DKSPSPSAADTTATPASYSSIVSFPWEKPTTLTANNECFQATRETEDTSTVTIATEVHPA 1020

Query: 103  R 103
            +
Sbjct: 1021 K 1021


>gi|58743365 ring finger protein 157 [Homo sapiens]
          Length = 679

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 11  VNTKSPL--AASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTR 62
           V T SPL   +  +S  + + K++  ST+ +SSV+ E++   S  E E Q   R
Sbjct: 410 VRTISPLDRLSDSSSQGLKLKKSLSKSTSQNSSVLHEEEDEHSCSESETQLSQR 463


>gi|122937247 unc-13 homolog A [Homo sapiens]
          Length = 1791

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 103  RGSYHPCLTKWESEAQRGKGVGLAKAMWWTSWGQSIYYVYESRSTVRL 150
            + SY PCL ++  E   GK   ++  + W  + Q + Y  E     RL
Sbjct: 1151 KNSYTPCLNQFPQELNVGK---ISAEVMWNLFAQDMKYAMEEHDKHRL 1195


>gi|64084766 fidgetin [Homo sapiens]
          Length = 759

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 36  TTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTHLI--IMATRPAQQAR-- 91
           T + + V S   PAD +      PG    +   S+S     +H +  + A  P+Q+    
Sbjct: 129 TASKAGVSSALPPADVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSLHAGLPSQEYAPG 188

Query: 92  ------HTTFTAQNHPARGSYHP 108
                 H+T+++Q  PA  S HP
Sbjct: 189 YNGSYLHSTYSSQPAPALPSPHP 211


>gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]
          Length = 696

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 4   TAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRI 63
           + P  MAV  +SPL  S++S +          + +S+  ++   PA  A +    P   I
Sbjct: 146 SVPYGMAVVVRSPLRTSLSSLR----------SEHSNGTVAPDSPASPASDGPALPSPAI 195

Query: 64  PVPGSSWSL 72
           P  G + SL
Sbjct: 196 PRGGFALSL 204


>gi|221139921 EF-hand calcium binding domain 8 [Homo sapiens]
          Length = 1288

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 10   AVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSS 69
            A ++ S L +  ASA  ++  ++    T   S +   + A +A      P    PV  S+
Sbjct: 1195 AASSPSSLLSVTASASRLLDSSLPTFLTPQFSFLLRPQSASTAHSTPSVPS---PVSKST 1251

Query: 70   WSLPRTPTHLIIMATRPAQQARHTTFTAQNHPARGSYH 107
                 TP H++    RP +  + T  ++     +GS H
Sbjct: 1252 LQGSVTPKHIVSSFERPPRPLKATFMSS----VKGSSH 1285


>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
           sapiens]
          Length = 699

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 17/71 (23%), Positives = 32/71 (45%)

Query: 20  SVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTHL 79
           +V   Q++    +  +TT +    S +  +   EE++ +P    P P SS   P  P   
Sbjct: 242 TVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYSSVPPPSAPPPK 301

Query: 80  IIMATRPAQQA 90
             + T+P ++A
Sbjct: 302 KSLGTQPPKKA 312


>gi|92859618 sphingomyelin phosphodiesterase 2, neutral [Homo
           sapiens]
          Length = 423

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 12/66 (18%)

Query: 78  HLIIMAT-----RPAQQARHTTFTAQNHPARGSYHPCLTKWESEAQRGKGVGLAKAMWWT 132
           H  +MAT      P QQ   +T    + PA  S   C+ K   EA    G+G+A+A WW 
Sbjct: 272 HEALMATLFVRHSPPQQNPSST----HGPAERSPLMCVLK---EAWTELGLGMAQARWWA 324

Query: 133 SWGQSI 138
           ++   +
Sbjct: 325 TFASYV 330


>gi|84626580 hypothetical protein LOC80178 [Homo sapiens]
          Length = 433

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 9/109 (8%)

Query: 2   AATAPMKMAVNTKSPLAASVASAQMMMPKNICCSTTNSSSVISEKKPADSAEEQEMQPGT 61
           A   P     N + PL A   S Q +  K +   T      +  ++    A E++  P  
Sbjct: 49  ALKPPPGPETNGEDPLPACTPSPQDL--KELEFLTQALEKAVRVRRGITKAGERDKAPSL 106

Query: 62  RI-PVPGSSWSLPRTPTHLIIMA------TRPAQQARHTTFTAQNHPAR 103
           +   +  SS +    P H    A      TRP +  R TT  A+ HP R
Sbjct: 107 KSRSIVTSSGTTASAPPHSPGQAGGHASDTRPTKGLRQTTVPAKGHPER 155


>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
          Length = 248

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 30  KNICCSTTNSSSVISEKKPADSAEEQEMQPGTRIPVPGSSWSLPRTPTH 78
           K  C S+++SSS  S    +DS +E++ Q   R      S+   ++ TH
Sbjct: 99  KKSCRSSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTH 147


>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 380

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 59  PGTRIPVPGSSWSLPRTPTHLIIMATRPAQQARHTTFTAQNH----PARG 104
           PG R P PG+  S PR    L+  A+ P + A     TA  H    P RG
Sbjct: 177 PGARRPAPGARRSRPR----LLRPASPPPRPAPRRRSTAPRHEGGRPGRG 222


>gi|169160983 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 261

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 113 WESEAQRGKGVG-----LAKAMWWTSWGQSIYYVYESR 145
           WE+E Q G+G G     +  A WW S  +S+    E+R
Sbjct: 22  WETEVQGGEGSGRSGRFVGNATWWRSALRSLLAGAEAR 59


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.123    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,595,929
Number of Sequences: 37866
Number of extensions: 296705
Number of successful extensions: 1115
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1053
Number of HSP's gapped (non-prelim): 87
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press