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Search of human proteins with 239741954
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741954 PREDICTED: hypothetical protein XP_002342361 [Homo
sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741954 PREDICTED: hypothetical protein XP_002342361 [Homo ... 321 1e-88
gi|239748061 PREDICTED: hypothetical protein XP_002346523 [Homo ... 305 7e-84
gi|160333411 early B-cell factor 4 [Homo sapiens] 37 0.005
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens] 37 0.008
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|145199237 transcription elongation factor B polypeptide 3 bin... 36 0.014
gi|46243671 G protein-coupled receptor 152 [Homo sapiens] 36 0.014
gi|124378039 SEC16 homolog A [Homo sapiens] 35 0.019
gi|110832843 TBP-associated factor 4 [Homo sapiens] 35 0.019
gi|191252782 p21-activated kinase 6 [Homo sapiens] 35 0.019
gi|191252780 p21-activated kinase 6 [Homo sapiens] 35 0.019
gi|9910476 p21-activated kinase 6 [Homo sapiens] 35 0.019
gi|91208420 bassoon protein [Homo sapiens] 35 0.025
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 35 0.025
gi|169171337 PREDICTED: similar to Six transmembrane epithelial ... 35 0.032
gi|169170942 PREDICTED: hypothetical protein LOC256227 [Homo sap... 35 0.032
gi|56549696 E1A binding protein p400 [Homo sapiens] 35 0.032
gi|23510413 sorting nexin 26 [Homo sapiens] 35 0.032
gi|190014615 hypothetical protein LOC157983 [Homo sapiens] 35 0.032
gi|239749181 PREDICTED: hypothetical protein XP_002346944 [Homo ... 34 0.042
gi|21328446 hormone-sensitive lipase [Homo sapiens] 34 0.055
gi|122891870 melanoma inhibitory activity family, member 3 [Homo... 34 0.055
gi|8922301 WD repeat domain 70 [Homo sapiens] 34 0.055
gi|239742226 PREDICTED: hypothetical protein [Homo sapiens] 33 0.072
gi|81295809 pericentrin [Homo sapiens] 33 0.072
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 33 0.094
gi|169207799 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|239746200 PREDICTED: similar to hCG2001482 [Homo sapiens] 33 0.12
>gi|239741954 PREDICTED: hypothetical protein XP_002342361 [Homo
sapiens]
Length = 152
Score = 321 bits (823), Expect = 1e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MGEKETRSISIACNVCFGRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPA 60
MGEKETRSISIACNVCFGRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPA
Sbjct: 1 MGEKETRSISIACNVCFGRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPA 60
Query: 61 STARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGS 120
STARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGS
Sbjct: 61 STARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGS 120
Query: 121 QATSHGGSALAAGSPTRSWGKEHALEAVCCWF 152
QATSHGGSALAAGSPTRSWGKEHALEAVCCWF
Sbjct: 121 QATSHGGSALAAGSPTRSWGKEHALEAVCCWF 152
>gi|239748061 PREDICTED: hypothetical protein XP_002346523 [Homo
sapiens]
Length = 182
Score = 305 bits (782), Expect = 7e-84
Identities = 152/182 (83%), Positives = 152/182 (83%), Gaps = 30/182 (16%)
Query: 1 MGEKETRSISIACNVCFG------------------------------RTHVSQLPPTGP 30
MGEKETRSISIACNVCFG RTHVSQLPPTGP
Sbjct: 1 MGEKETRSISIACNVCFGNTYNVLVLCQRYTTVFNTTSVPAVKKLTVTRTHVSQLPPTGP 60
Query: 31 GNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLP 90
GNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLP
Sbjct: 61 GNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLP 120
Query: 91 AASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEHALEAVCC 150
AASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEHALEAVCC
Sbjct: 121 AASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEHALEAVCC 180
Query: 151 WF 152
WF
Sbjct: 181 WF 182
>gi|160333411 early B-cell factor 4 [Homo sapiens]
Length = 598
Score = 37.4 bits (85), Expect = 0.005
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 24/138 (17%)
Query: 17 FGRTHVSQLPPTGPGNPRERVKA--WEREQD---------GLRHEIRLKSGSAPA----S 61
+G + ++ P PG+P K +R D G E+ LK + A S
Sbjct: 344 YGFQRLQKVIPRHPGDPERLPKEVLLKRAADLAEALYGVPGSNQELLLKRAADVAEALYS 403
Query: 62 TARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTP------LASCGQVTPPEAA 115
T R PL+P A P PH AV + TP SC +P A
Sbjct: 404 TPRAPGPLAPLA--PSHPHPAVVGINAFSSPLAIAVGDATPGPEPGYARSCSSASPRGFA 461
Query: 116 PGNGSQATSHGGSALAAG 133
P GSQ + +GG L AG
Sbjct: 462 PSPGSQQSGYGG-GLGAG 478
>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
Length = 727
Score = 36.6 bits (83), Expect = 0.008
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 50 EIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPF---SSHTPLASC 106
E L+ S P A P + QA TP P SA P P+A+ P ++HT +AS
Sbjct: 292 EEALRRSSTPIEHA---PVCTSQATTPLLPASAQPPAAASPSAASPPLATAAAHTAIAS- 347
Query: 107 GQVTPPEAAPGNG--SQATSHGGSALAAGSP 135
T P ++P + QA+S+ + A+ +P
Sbjct: 348 ASTTAPASSPADSPRPQASSYSPAVAASSAP 378
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.6 bits (83), Expect = 0.008
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 44 QDGLRHEIRLKSGSAPASTARGRP-PLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTP 102
Q GL L+ G + G P P+A P P RR S + +
Sbjct: 189 QPGLPTHAALRGGGGGSEGGGGGARPSPPRARQP--PSGRPRPRRTRLLGSAERHTGRAA 246
Query: 103 LASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEH 143
LA GQ++ P AA N S+ S AA PTR + H
Sbjct: 247 LARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGH 287
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.6 bits (83), Expect = 0.008
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 44 QDGLRHEIRLKSGSAPASTARGRP-PLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTP 102
Q GL L+ G + G P P+A P P RR S + +
Sbjct: 189 QPGLPTHAALRGGGGGSEGGGGGARPSPPRARQP--PSGRPRPRRTRLLGSAERHTGRAA 246
Query: 103 LASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEH 143
LA GQ++ P AA N S+ S AA PTR + H
Sbjct: 247 LARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGH 287
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.6 bits (83), Expect = 0.008
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 44 QDGLRHEIRLKSGSAPASTARGRP-PLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTP 102
Q GL L+ G + G P P+A P P RR S + +
Sbjct: 189 QPGLPTHAALRGGGGGSEGGGGGARPSPPRARQP--PSGRPRPRRTRLLGSAERHTGRAA 246
Query: 103 LASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEH 143
LA GQ++ P AA N S+ S AA PTR + H
Sbjct: 247 LARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGH 287
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 35.8 bits (81), Expect = 0.014
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 24/147 (16%)
Query: 2 GEKETRSISIACNVCFGRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPAS 61
G +ET+ ++ C+V Q PP P +P + + + + K+G+ PA
Sbjct: 333 GLRETKETAVQCDV-----GDLQPPPAKPASPAQVQSSQDGGCPKEGKPKKKKTGAPPAP 387
Query: 62 TA--------------RGRPPLSPQAETPEEPHSAVPNRR-QLPAASEDPFSSHTPLASC 106
+ RGRP P+A+ + P ++ P R+ + P ++ SS TP+A+
Sbjct: 388 SCKDGAQGKDKTKDKGRGRPVEKPRAD-KKGPQASSPRRKAERPEGTKKKPSSATPVATS 446
Query: 107 GQVTPPEAAPGNGSQATSHGGSALAAG 133
G+ P P TS G S AAG
Sbjct: 447 GKGRPDR--PARRPSPTS-GDSRPAAG 470
>gi|46243671 G protein-coupled receptor 152 [Homo sapiens]
Length = 470
Score = 35.8 bits (81), Expect = 0.014
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 68 PLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQV---TPPEAAPGNG 119
P + +P + S P+ P A EDP TP AS G+ TPPEAAPG G
Sbjct: 417 PAASSVPSPCDEASPTPSSHPTPGALEDPA---TPPASEGESPSSTPPEAAPGAG 468
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 35.4 bits (80), Expect = 0.019
Identities = 38/128 (29%), Positives = 44/128 (34%), Gaps = 9/128 (7%)
Query: 22 VSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQ------AET 75
V PP PG P V + R G R R P+ T R P L+P A
Sbjct: 2164 VQAAPPALPGPPGAPVNMYSRRAAGTR--ARYVDVLNPSGTQRSEPALAPADFVAPLAPL 2221
Query: 76 PEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTP-PEAAPGNGSQATSHGGSALAAGS 134
P + VP D P A+ G P P P S A S GS L +
Sbjct: 2222 PIPSNLFVPTPDAEEPQLPDGTGREGPAAARGLANPEPAPEPKVLSSAASLPGSELPSSR 2281
Query: 135 PTRSWGKE 142
P S G E
Sbjct: 2282 PEGSQGGE 2289
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 35.4 bits (80), Expect = 0.019
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 57 SAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAP 116
+AP + A PP +P P P +A P PA P + PP AA
Sbjct: 247 AAPPAPAAPSPPAAP---APAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAA 303
Query: 117 GNGSQATSHGGSALAAGSP 135
NG A + A AAG P
Sbjct: 304 QNGGSAGAAPAPAPAAGGP 322
Score = 30.4 bits (67), Expect = 0.61
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 20/89 (22%)
Query: 55 SGSAPASTARGRPPLSPQAET----------PEEPHSAVPNRRQLPAASEDPFSSHTPLA 104
+G+ PA+ A G P +P+ P+ P P R +PA P + P
Sbjct: 71 AGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRP-- 128
Query: 105 SCGQVTPPEAAPGNGSQATSHGGSALAAG 133
PPE + GS A +A+AAG
Sbjct: 129 ------PPEGSA--GSCAPVPAAAAVAAG 149
>gi|191252782 p21-activated kinase 6 [Homo sapiens]
Length = 681
Score = 35.4 bits (80), Expect = 0.019
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 2 GEKETRSISIACNVCFGRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPAS 61
G +E R S GR P G G+P + + ++ R + +AP S
Sbjct: 223 GSEEARPQSCLVGSATGR-------PGGEGSPSPKTRESSLKRRLFRSMFLSTAATAPPS 275
Query: 62 TARGRPPLSPQAE--------TPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPE 113
+++ PP PQ++ + P S V + LP S+ P + +PL + +P +
Sbjct: 276 SSKPGPP--PQSKPNSSFRPPQKDNPPSLVAKAQSLP--SDQPVGTFSPLTTSDTSSPQK 331
Query: 114 A---APGNGSQATSHGGSALAAGSPTRSW 139
+ AP G G + AGSP R+W
Sbjct: 332 SLRTAPATGQLP----GRSSPAGSP-RTW 355
>gi|191252780 p21-activated kinase 6 [Homo sapiens]
Length = 681
Score = 35.4 bits (80), Expect = 0.019
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 2 GEKETRSISIACNVCFGRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPAS 61
G +E R S GR P G G+P + + ++ R + +AP S
Sbjct: 223 GSEEARPQSCLVGSATGR-------PGGEGSPSPKTRESSLKRRLFRSMFLSTAATAPPS 275
Query: 62 TARGRPPLSPQAE--------TPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPE 113
+++ PP PQ++ + P S V + LP S+ P + +PL + +P +
Sbjct: 276 SSKPGPP--PQSKPNSSFRPPQKDNPPSLVAKAQSLP--SDQPVGTFSPLTTSDTSSPQK 331
Query: 114 A---APGNGSQATSHGGSALAAGSPTRSW 139
+ AP G G + AGSP R+W
Sbjct: 332 SLRTAPATGQLP----GRSSPAGSP-RTW 355
>gi|9910476 p21-activated kinase 6 [Homo sapiens]
Length = 681
Score = 35.4 bits (80), Expect = 0.019
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 2 GEKETRSISIACNVCFGRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPAS 61
G +E R S GR P G G+P + + ++ R + +AP S
Sbjct: 223 GSEEARPQSCLVGSATGR-------PGGEGSPSPKTRESSLKRRLFRSMFLSTAATAPPS 275
Query: 62 TARGRPPLSPQAE--------TPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPE 113
+++ PP PQ++ + P S V + LP S+ P + +PL + +P +
Sbjct: 276 SSKPGPP--PQSKPNSSFRPPQKDNPPSLVAKAQSLP--SDQPVGTFSPLTTSDTSSPQK 331
Query: 114 A---APGNGSQATSHGGSALAAGSPTRSW 139
+ AP G G + AGSP R+W
Sbjct: 332 SLRTAPATGQLP----GRSSPAGSP-RTW 355
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 35.0 bits (79), Expect = 0.025
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 55 SGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEA 114
+ AP + RP + P EEP PAA ++ + P GQ P +A
Sbjct: 2287 AAKAPGAGGPSRPEM-PVGAAREEPLPTTT-----PAAIKEAAGAPAPAPLAGQKPPADA 2340
Query: 115 APGNGSQATSHGG 127
APG GS A S G
Sbjct: 2341 APGGGSGALSRPG 2353
Score = 30.8 bits (68), Expect = 0.46
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 38 KAWEREQDGLRHEIRLKSGSAPASTA----RGRPPLSPQAETPEEPHSAVPNRRQLPAAS 93
K +ERE++ + E K+G P+S + R RPP+ QA E P S P R PA
Sbjct: 3464 KGYEREREAV--ERLQKAGPKPSSLSMAHSRVRPPMRSQASEEESPVS--PLGRPRPAGG 3519
Query: 94 EDPFSSHTPLASCGQVTPPE 113
P T C + P+
Sbjct: 3520 PLPPGGDTCPQFCSSHSMPD 3539
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 35.0 bits (79), Expect = 0.025
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 44 QDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDP---FSSH 100
++GL+ R + A A +A G P SP+ EP P RR+ E+ ++
Sbjct: 83 EEGLQ---RPREPPAAAPSAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAAR 139
Query: 101 TPLASCGQVTPPEA--APGNGSQATSHGG------SALAAGSPTRSWGKEHALEAVCCW 151
A+C + ++ APG G + G +A AAG+ R+ + CCW
Sbjct: 140 AADAACNGLPGSDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARASCAAAKTQGRCCW 198
>gi|169171337 PREDICTED: similar to Six transmembrane epithelial
antigen of prostate [Homo sapiens]
Length = 450
Score = 34.7 bits (78), Expect = 0.032
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 71 PQAETPEEPHS------AVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGSQATS 124
P+A +P P S A N + +P +P P G+ T EA P G +A+
Sbjct: 53 PEASSPRAPLSHSQQEEAAMNMKDVP----EPCGRGAPAGGAGRATDKEAGPAAGLEASR 108
Query: 125 HGGSALAAG 133
GGS A G
Sbjct: 109 SGGSGAAWG 117
>gi|169170942 PREDICTED: hypothetical protein LOC256227 [Homo
sapiens]
Length = 450
Score = 34.7 bits (78), Expect = 0.032
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 71 PQAETPEEPHS------AVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGSQATS 124
P+A +P P S A N + +P +P P G+ T EA P G +A+
Sbjct: 53 PEASSPRAPLSHSQQEEAAMNMKDVP----EPCGRGAPAGGAGRATDKEAGPAAGLEASR 108
Query: 125 HGGSALAAG 133
GGS A G
Sbjct: 109 SGGSGAAWG 117
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 34.7 bits (78), Expect = 0.032
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 49 HEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASED--PFSSHTPLASC 106
H +L++ + ++ G+PP PQA + SA+P R LP+ ++ P +A
Sbjct: 1513 HPAKLRAQTTAQASTPGQPPPQPQAPSHAAGQSALPQRLVLPSQAQARLPSGEVVKIAQL 1572
Query: 107 GQVTPPEA 114
+T P++
Sbjct: 1573 ASITGPQS 1580
Score = 32.7 bits (73), Expect = 0.12
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 55 SGSAPASTARGRPPLSPQAETPEEPHSAVP----------NRRQLPAASEDPFSSHTPLA 104
+ +AP RGRPP++ + PE +A P R Q +AS S P
Sbjct: 1457 ASAAPQGPLRGRPPIATFSANPEAKAAAAPFQTSQASASAPRHQPASASSTAASPAHPAK 1516
Query: 105 SCGQVTPPEAAPGN---GSQATSH--GGSAL 130
Q T + PG QA SH G SAL
Sbjct: 1517 LRAQTTAQASTPGQPPPQPQAPSHAAGQSAL 1547
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 34.7 bits (78), Expect = 0.032
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 24/103 (23%)
Query: 56 GSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPE-- 113
G +PAS++ PP P++ + +P VP +LP P+ TP G PPE
Sbjct: 1017 GPSPASSSSSSPPAHPRSRS--DPGPPVP---RLPQKQRAPWGPRTPHRVPGPWGPPEPL 1071
Query: 114 -----AAPGNGSQATSHGGSALAAGS------------PTRSW 139
A P G H GS G PT SW
Sbjct: 1072 LLYRAAPPAYGRGGELHRGSLYRNGGQRGEGAGPPPPYPTPSW 1114
>gi|190014615 hypothetical protein LOC157983 [Homo sapiens]
Length = 295
Score = 34.7 bits (78), Expect = 0.032
Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 18/111 (16%)
Query: 15 VCFGRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAE 74
VC S PP+ P +PR RV+A R DG ++GS GR P AE
Sbjct: 176 VCRSALETSAFPPSKPKSPRGRVRA--RSSDGRLRHPAWRAGSG------GRGGRGPSAE 227
Query: 75 TPEEPHSAVPNRRQLPAASE-----DPFSSHTPLASCGQVTPPEAA--PGN 118
RR LP A++ PL + ++ PEAA PGN
Sbjct: 228 LASRYWG---RRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGN 275
>gi|239749181 PREDICTED: hypothetical protein XP_002346944 [Homo
sapiens]
Length = 317
Score = 34.3 bits (77), Expect = 0.042
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 71 PQAETPEEPHS------AVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGSQATS 124
P+A +P P S A N + +P +P P G+ T EA P G +A
Sbjct: 53 PEASSPRAPPSHSQQEEAAMNMKDVP----EPCGRGAPAGGAGRATDKEAGPAAGLEAPR 108
Query: 125 HGGSALAAG 133
GGS A G
Sbjct: 109 SGGSGAAWG 117
>gi|21328446 hormone-sensitive lipase [Homo sapiens]
Length = 1076
Score = 33.9 bits (76), Expect = 0.055
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 29 GPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQ 88
GPG +E + +++ LR + G P G PP + Q A P ++
Sbjct: 116 GPGLGKESIT---QQEPALRQRHVAQPGPGP-----GEPPPAQQEAESTPAAQAKPGAKR 167
Query: 89 LPAASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHG 126
P+A + S TP S Q TP + A T G
Sbjct: 168 EPSAPTESTSQETPEQSDKQTTPVQGAKSKQGSLTELG 205
>gi|122891870 melanoma inhibitory activity family, member 3 [Homo
sapiens]
Length = 1907
Score = 33.9 bits (76), Expect = 0.055
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 56 GSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAA---SEDPFSSHTPLASCGQVTPP 112
G +P S PPL+ E P P SA NRR +P + S D H ++ P
Sbjct: 1668 GPSPVSGGECSPPLT--VEPPVRPLSATLNRRDMPRSEFGSVDGPLPHPRWSAEASGKPS 1725
Query: 113 EAAPGNGSQATSHGGSALAAGSPTR 137
+ PG+G+ + S SPTR
Sbjct: 1726 PSDPGSGTATMMNSSS--RGSSPTR 1748
Score = 28.9 bits (63), Expect = 1.8
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 66 RPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPE-AAPGNGSQATS 124
RPPL + P P P RR LP H P G + P E PG +
Sbjct: 1809 RPPLGLREFAPGVP----PGRRDLPLHPRGFLPGHAPFRPLGSLGPREYFIPGTRLPPPT 1864
Query: 125 HG 126
HG
Sbjct: 1865 HG 1866
>gi|8922301 WD repeat domain 70 [Homo sapiens]
Length = 654
Score = 33.9 bits (76), Expect = 0.055
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 86 RRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGS 128
R+QL DP SH P PP A PG G + +HGG+
Sbjct: 548 RKQLEKDRLDPLKSHKP-------EPPVAGPGRGGRVGTHGGT 583
>gi|239742226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 33.5 bits (75), Expect = 0.072
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 30 PGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVP 84
PG+P R W L+ E +L +GS PA + PP T + H +P
Sbjct: 244 PGSPGARPSNWNISSPALKPEHQLPAGSPPAQPSTSAPPRVLSCTTLKLEHQLLP 298
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 33.5 bits (75), Expect = 0.072
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 37 VKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDP 96
VK W+ + + L G AP R R P SP P R+ P + P
Sbjct: 3213 VKKWQE----VDRKGALAQGKAPRPGPRARQPQSP------------PRTRESPPTRDVP 3256
Query: 97 FSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEHAL 145
S HT + G+ A+P +G +AT S L S T S EH+L
Sbjct: 3257 -SGHTRDPARGRRLAAAASPHSGGRATPSPNSRLER-SLTASQDPEHSL 3303
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 33.1 bits (74), Expect = 0.094
Identities = 33/131 (25%), Positives = 42/131 (32%), Gaps = 30/131 (22%)
Query: 12 ACNVCFGRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSP 71
AC C R QL P G G P+ V S RP +P
Sbjct: 76 ACGAC-ARPPGHQLQPPGAGAPQPGVAC---------------------SYLGPRPQRTP 113
Query: 72 QAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALA 131
+ A P RR P P + G+ PP A GS+ S L
Sbjct: 114 CSAQSRPGWCAGPRRRHAPGTE--------PHVAPGRAPPPRAGASPGSRLLPGSPSLLL 165
Query: 132 AGSPTRSWGKE 142
+ R+WG+E
Sbjct: 166 PAATWRTWGQE 176
>gi|169207799 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 32.7 bits (73), Expect = 0.12
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 20 THVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEP 79
T SQLPP PG P R R D L S P + P++ +P P
Sbjct: 37 TPTSQLPPRIPGPPTTRQP--PRVPDHLHLSCPRASPDRPRPSCPLASPIADVPPSPARP 94
Query: 80 HSA-VPNRRQLP--AASEDPFSSHTPLASCGQVTPPEAAPGNGS 120
+A VP+ +LP + P +S L C P A P NG+
Sbjct: 95 RTAHVPSAPRLPDRPLPDSPRASLWQLPRC--FPPRRARPPNGA 136
>gi|239746200 PREDICTED: similar to hCG2001482 [Homo sapiens]
Length = 153
Score = 32.7 bits (73), Expect = 0.12
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 43 EQDGLRHEIRLKSGS------APASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDP 96
E D + H SG+ +P+ST P SPQ ET P S P+ P
Sbjct: 4 ETDSITHLSPSSSGATPTIQPSPSSTDSRMIPSSPQPETITHPSSGSPSAELTP------ 57
Query: 97 FSSHTPLASCGQVTP 111
SSH+ L S +TP
Sbjct: 58 -SSHSTLPSSESLTP 71
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.127 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,240,545
Number of Sequences: 37866
Number of extensions: 462503
Number of successful extensions: 3068
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 394
Number of HSP's that attempted gapping in prelim test: 2698
Number of HSP's gapped (non-prelim): 782
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.