Search of human proteins with 239741926

Search of human proteins with 239741926

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741926 PREDICTED: hypothetical protein XP_002342353 [Homo
sapiens]
         (206 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748034 PREDICTED: hypothetical protein [Homo sapiens]           436   e-123
gi|239741926 PREDICTED: hypothetical protein XP_002342353 [Homo ...   436   e-123
gi|56549696 E1A binding protein p400 [Homo sapiens]                    39   0.004
gi|239745480 PREDICTED: hypothetical protein XP_002343504 [Homo ...    37   0.009
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]    34   0.077
gi|169171432 PREDICTED: similar to hCG2014367 [Homo sapiens]           33   0.17 
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ...    33   0.22 
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]      33   0.22 
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ...    33   0.22 
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ...    33   0.22 
gi|157502171 sorting nexin 19 [Homo sapiens]                           33   0.22 
gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens]                 32   0.29 
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap...    32   0.38 
gi|8567418 ubiquilin 3 [Homo sapiens]                                  32   0.38 
gi|163965366 nascent polypeptide-associated complex alpha subuni...    32   0.38 
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]         32   0.38 
gi|146134388 YLP motif containing 1 [Homo sapiens]                     32   0.38 
gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo ...    31   0.65 
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]         31   0.65 
gi|13128980 proline rich 14 [Homo sapiens]                             31   0.65 
gi|169213725 PREDICTED: hypothetical protein [Homo sapiens]            31   0.85 
gi|239756943 PREDICTED: hypothetical protein [Homo sapiens]            31   0.85 
gi|169214202 PREDICTED: hypothetical protein [Homo sapiens]            31   0.85 
gi|239751443 PREDICTED: hypothetical protein [Homo sapiens]            31   0.85 
gi|169171899 PREDICTED: similar to hCG2014367 [Homo sapiens]           31   0.85 
gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]            31   0.85 
gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo ...    31   0.85 
gi|169171130 PREDICTED: hypothetical protein LOC100130600 [Homo ...    31   0.85 
gi|239509024 PREDICTED: similar to hCG2014367 [Homo sapiens]           31   0.85 
gi|71043876 undifferentiated embryonic cell transcription factor...    31   0.85 

>gi|239748034 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 206

 Score =  436 bits (1122), Expect = e-123
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MGAGGSWLLLSPRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGG 60
           MGAGGSWLLLSPRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGG
Sbjct: 1   MGAGGSWLLLSPRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGG 60

Query: 61  SVAPHLRMEGPSLQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHA 120
           SVAPHLRMEGPSLQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHA
Sbjct: 61  SVAPHLRMEGPSLQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHA 120

Query: 121 SSQRLCQTLDGGHPDSPCGASLEAGGWARAGWWALLGVPVGGGGEEGTGSLWAPAGCFEA 180
           SSQRLCQTLDGGHPDSPCGASLEAGGWARAGWWALLGVPVGGGGEEGTGSLWAPAGCFEA
Sbjct: 121 SSQRLCQTLDGGHPDSPCGASLEAGGWARAGWWALLGVPVGGGGEEGTGSLWAPAGCFEA 180

Query: 181 SSVGLEGLLLRRCRELGGGLGSRRCP 206
           SSVGLEGLLLRRCRELGGGLGSRRCP
Sbjct: 181 SSVGLEGLLLRRCRELGGGLGSRRCP 206


>gi|239741926 PREDICTED: hypothetical protein XP_002342353 [Homo
           sapiens]
          Length = 206

 Score =  436 bits (1122), Expect = e-123
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MGAGGSWLLLSPRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGG 60
           MGAGGSWLLLSPRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGG
Sbjct: 1   MGAGGSWLLLSPRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGG 60

Query: 61  SVAPHLRMEGPSLQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHA 120
           SVAPHLRMEGPSLQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHA
Sbjct: 61  SVAPHLRMEGPSLQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHA 120

Query: 121 SSQRLCQTLDGGHPDSPCGASLEAGGWARAGWWALLGVPVGGGGEEGTGSLWAPAGCFEA 180
           SSQRLCQTLDGGHPDSPCGASLEAGGWARAGWWALLGVPVGGGGEEGTGSLWAPAGCFEA
Sbjct: 121 SSQRLCQTLDGGHPDSPCGASLEAGGWARAGWWALLGVPVGGGGEEGTGSLWAPAGCFEA 180

Query: 181 SSVGLEGLLLRRCRELGGGLGSRRCP 206
           SSVGLEGLLLRRCRELGGGLGSRRCP
Sbjct: 181 SSVGLEGLLLRRCRELGGGLGSRRCP 206


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 12  PRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLRMEGP 71
           P+     L  S+ACP S   EG+   A P  PP    P  PS+S SA          + P
Sbjct: 7   PQNVQHQLQRSRACPGS---EGEEQPAHPNPPPSPAAPFAPSASPSA---------PQSP 54

Query: 72  SLQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGR 105
           S Q+  + + R  ++G    +TLQ++GP+ G  +
Sbjct: 55  SYQI-QQLMNRSPATGQNVNITLQSVGPVVGGNQ 87


>gi|239745480 PREDICTED: hypothetical protein XP_002343504 [Homo
           sapiens]
          Length = 243

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 54/209 (25%), Positives = 74/209 (35%), Gaps = 39/209 (18%)

Query: 2   GAGGSW---LLLSPRGPPTALDPSKACPVSPVC-------------EGQPTLAEPT--LP 43
           G GG W   +++  +  P  +DP+   P+ P C              G     +P+  L 
Sbjct: 6   GGGGPWAVGVVVLVKAQPAHVDPTGGAPLLPTCCFSFSISTSPSSAPGHSWHGDPSSELL 65

Query: 44  PWAFGPSFPSSSRSAGGSV-APHLRMEGPSLQVCGRTVLRLLSSGAVSGVTLQTLGPLKG 102
           P++  PS PS  R  G    AP L +   + +V    +    + GA +       GP   
Sbjct: 66  PFSGAPSSPS--RHPGQCPWAPRL-LRAWATRVSAALLTAQFTPGAAAA------GPQGP 116

Query: 103 AGRWGRALQPALRGGHHASSQRLCQTLDGGHPDSPCGASLEAGGWARAGWWA-------L 155
              W R L    R    ++ Q+L   L      SP  A   AG     G           
Sbjct: 117 GSTWRRLLASRFRCSKKSAVQQLTPLL----LRSPQVAIFLAGAGRALGSGRPPCSGRRR 172

Query: 156 LGVPVGGGGEEGTGSLWAPAGCFEASSVG 184
           L VP   GGE  T   WAPA    A   G
Sbjct: 173 LSVPAARGGEGATSRHWAPAASPAAGGAG 201


>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
          Length = 753

 Score = 34.3 bits (77), Expect = 0.077
 Identities = 41/150 (27%), Positives = 52/150 (34%), Gaps = 13/150 (8%)

Query: 12  PRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLRMEGP 71
           P GPP A   + A   +P   G P    P  PP A GP    +     G+ AP+ +   P
Sbjct: 324 PSGPPPA---ASALSTTPGNNGVPA---PAAPPSALGPKASPAPSHNSGTPAPYAQAVAP 377

Query: 72  SLQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHASSQRLCQTLDG 131
                  T      S   SG      G   G+G  G +       G  A  Q    +   
Sbjct: 378 PAPSGPSTTQPRPPSVQPSG------GGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSS 431

Query: 132 GHPDSPCGASLEAGGWARAGWWALLGVPVG 161
              DSP   +L + G   A   A LG P G
Sbjct: 432 VVADSPAEVALSSSGGNNASSQA-LGPPSG 460


>gi|169171432 PREDICTED: similar to hCG2014367 [Homo sapiens]
          Length = 594

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 11/72 (15%)

Query: 1   MGAGGSWLLLSPRGPPTALDPSKACPVSPVCEGQPTLA---EPTLPPWAF--GPSFPSSS 55
           MGA G      PRG PT +DP+   P +P C+ +   +   +P  P  A   G SFPS+ 
Sbjct: 334 MGAQGRL----PRGNPTDMDPTLEDPTTPKCKMRRCSSCSPKPNTPKCAMCDGDSFPSA- 388

Query: 56  RSAGGSVAPHLR 67
              GG     LR
Sbjct: 389 -CTGGEAKDRLR 399


>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
           sapiens]
          Length = 400

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 45/160 (28%), Positives = 57/160 (35%), Gaps = 31/160 (19%)

Query: 18  ALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAG----GSVAPHLRMEGPSL 73
           A++P     +SP   G         PP  F PS  S+  +A     GS A   +   P+ 
Sbjct: 72  AINPHHTASLSPAGRGAQR------PPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAG 125

Query: 74  QVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHASSQRLCQTLDGGH 133
              G        SG      LQ LGP +G G         L      SS RL        
Sbjct: 126 VAQG--------SGGGGERWLQGLGPPRGRG---------LSTAPPPSSLRLLPPTPRPF 168

Query: 134 PDSPCGASLEAGGWARAGWWALLGVPVGGGGEEGTGSLWA 173
           P +P G   E GG   A  W        GGGE+G  ++ A
Sbjct: 169 PPAPAGGKGEGGGKESAVLWK----GAEGGGEKGNRNMAA 204


>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
          Length = 528

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 107 GRALQPALRGGHHASSQRLCQTLDGGHPDSPCGASLEAGGW----ARAGWWALLGVPVGG 162
           GR  +PA R    A+S  L      GHPD+P  +      W     R  W    GV  GG
Sbjct: 184 GRGGRPARRTTQRAASSSLPPRRSEGHPDAPHRSPRPLYRWLGPPPRRDWMREDGVGAGG 243

Query: 163 GGEE 166
           G +E
Sbjct: 244 GPQE 247


>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
           sapiens]
          Length = 400

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 45/160 (28%), Positives = 57/160 (35%), Gaps = 31/160 (19%)

Query: 18  ALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAG----GSVAPHLRMEGPSL 73
           A++P     +SP   G         PP  F PS  S+  +A     GS A   +   P+ 
Sbjct: 72  AINPHHTASLSPAGRGAQR------PPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAG 125

Query: 74  QVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHASSQRLCQTLDGGH 133
              G        SG      LQ LGP +G G         L      SS RL        
Sbjct: 126 VAQG--------SGGGGERWLQGLGPPRGRG---------LSTAPPPSSLRLLPPTPRPF 168

Query: 134 PDSPCGASLEAGGWARAGWWALLGVPVGGGGEEGTGSLWA 173
           P +P G   E GG   A  W        GGGE+G  ++ A
Sbjct: 169 PPAPAGGKGEGGGKESAVLWK----GAEGGGEKGNRNMAA 204


>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
           sapiens]
          Length = 591

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 107 GRALQPALRGGHHASSQRLCQTLDGGHPDSPCGASLEAGGW----ARAGWWALLGVPVGG 162
           GR  +PA R    A+S  L      GHPD+P  +      W     R  W    GV  GG
Sbjct: 176 GRGGRPARRTTQRAASSSLPPRRSEGHPDAPHRSPRPLYRWLGPPPRRDWMREDGVGAGG 235

Query: 163 GGEE 166
           G +E
Sbjct: 236 GPQE 239


>gi|157502171 sorting nexin 19 [Homo sapiens]
          Length = 992

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 21  PSKACPVSPVC-----EGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLRMEGP---- 71
           P K CP  P C         +  +PTLPP     S P    SA  S  P    +GP    
Sbjct: 472 PEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDGPVIIQ 531

Query: 72  SLQVCGRTVLRLLSSGAVSGVTLQTL 97
           +L++ G    R  S       TL T+
Sbjct: 532 NLRITGTITAREHSGTGFHPYTLYTV 557


>gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens]
          Length = 572

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 125 LCQTLDGGHPDSPCGASLEAGGWARAGWW------ALLGVPVGGGGEEGTGSLWAPAGCF 178
           L  + +G  PDS  G S   GG   AG        A+ GVP G GG  G G + A +G  
Sbjct: 7   LSVSFEGPRPDSSAGGSSAGGGGGSAGGAAPSEGPAVGGVPGGAGG--GGGVVGAGSGED 64

Query: 179 EASSVGLEG 187
             SS G  G
Sbjct: 65  NRSSAGEPG 73


>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
          Length = 2365

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 39/164 (23%), Positives = 54/164 (32%), Gaps = 35/164 (21%)

Query: 21   PSKACPVSPVCEGQPTLAEPTLPPWAFGPSF-PSSSRSAGGS-VAPHLRMEGPSLQVCGR 78
            PS+   + P  + + T      PP  + P   P   R   GS + P      P  ++   
Sbjct: 1351 PSRQVTMLPAKQAELTRRSQAEPPHPWSPEKRPEGDRQLQGSPLPPRTSARTPEREL--- 1407

Query: 79   TVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHASSQRLCQTLDGGHPDSPC 138
               R L SG          GP +  G W    +P    G H   +R              
Sbjct: 1408 RTQRPLESGQA--------GPRQPLGVWQSQEEPPGSQGPHRHLER-------------- 1445

Query: 139  GASLEAGGWARAGWWALLGVPVGGGGEEGTGSLWAPAGCFEASS 182
              S + GG    GWW        G GE   G+  AP G +  +S
Sbjct: 1446 SWSSQEGGLGPGGWW--------GCGEPSLGAAKAPEGAWGGTS 1481


>gi|8567418 ubiquilin 3 [Homo sapiens]
          Length = 655

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 20  DPSKACPVSPVCEGQPTLAEPTLP--PWAFGPSFPSSSRSAGGSVAPHLRME 69
           D +   P +P+    PT A P +P  PW   P++P S R  G + AP L+ E
Sbjct: 450 DSANRVPFAPL-SFSPTAAIPGIPEPPWLPSPAYPRSLRPDGMNPAPQLQDE 500


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 12   PRG---PPTALDPS-KACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLR 67
            P+G   PP A  PS K  P +P  +G PT    T P     P+ P+++ S+ G       
Sbjct: 1306 PKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSS 1365

Query: 68   MEGPS 72
             EGP+
Sbjct: 1366 KEGPT 1370



 Score = 31.2 bits (69), Expect = 0.65
 Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 13/129 (10%)

Query: 11  SPRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLRMEG 70
           SP+G PT   PS   P+SP     P    PT  P      FP       G   P  + + 
Sbjct: 860 SPKGAPT---PSAVTPLSPKGVTLPPKETPT--PSVVNLPFPKE-----GPATPAPK-QA 908

Query: 71  PSLQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHASSQRLCQTLD 130
           P+L +   +  +  ++ A  G+        KGA     A  P+ +GG    S +   T  
Sbjct: 909 PALSMTSSSPKKARATPAPKGIPASPSP--KGAPTPPAATPPSPKGGPATPSPKWAPTPP 966

Query: 131 GGHPDSPCG 139
              P SP G
Sbjct: 967 AATPPSPKG 975



 Score = 30.8 bits (68), Expect = 0.85
 Identities = 38/134 (28%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 12   PRG---PPTALDPS-KACPVS-PVCEGQPTLAEPTLPPWAFGPSFPS-SSRSAGGSVAPH 65
            P+G   PP A  PS K  P + P+ +G PT    TLP    GP+ PS        +  P 
Sbjct: 1029 PKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPP 1088

Query: 66   LRMEGPSLQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHASSQRL 125
                GP+        +   ++       L T  P KGA     A  P+ +GG      + 
Sbjct: 1089 SPKGGPATPSPKGAPMPPAATPPSPKGGLAT-PPHKGAPTTPAATPPSPKGGLATPPPKG 1147

Query: 126  CQTLDGGHPDSPCG 139
              T     P SP G
Sbjct: 1148 APTTPAATPPSPKG 1161



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 37/132 (28%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 15   PPTALDPS-KACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLRMEGPSL 73
            PP A  PS K  P +P  +G PT    T P    GP+ PS     G    P +    P  
Sbjct: 965  PPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPK---GAPTPPAVTPPSPKG 1021

Query: 74   QVC------GRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHASSQRLCQ 127
                     G +     +  +  G    T  P KGA     A  P+ +GG    S +   
Sbjct: 1022 SPAATPFPKGASTPPAATPPSPKGSPAATPLP-KGAPTTPAATLPSPKGGPATPSLKGAP 1080

Query: 128  TLDGGHPDSPCG 139
            T     P SP G
Sbjct: 1081 TPPAATPPSPKG 1092



 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 12   PRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLRMEGP 71
            P+G PT   P    P SP  +G PTL   T P    GP+ PSS        A      GP
Sbjct: 1329 PKGAPT---PPAVTPPSP--KGTPTL-PATTPSSKGGPTTPSSKEGPTPPAATPSHKGGP 1382

Query: 72   SL 73
            ++
Sbjct: 1383 AM 1384



 Score = 27.3 bits (59), Expect = 9.4
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 11  SPRG---PPTALDPS-KACPVSPVCEGQPTLAEPTLPPWAFGPSFPS 53
           SP+G   PP A  PS K  P +P  +  PT    T P    GP+ PS
Sbjct: 935 SPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPS 981


>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
          Length = 948

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 12  PRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAP--HLRME 69
           PR P  +  P++  P S         A P  P  +  PS   +S S+  S +P   L  E
Sbjct: 830 PRKPSASQRPTRQTPSSAALTAAAVAAPPHCPGGSASPSSSKASSSSSSSSSPPASLDHE 889

Query: 70  GPSLQ 74
            PSLQ
Sbjct: 890 APSLQ 894


>gi|146134388 YLP motif containing 1 [Homo sapiens]
          Length = 2146

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 12  PRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLRMEGP 71
           P  PP  L PS   PV P      T+  P +PP    PS P+S    G  + P L   GP
Sbjct: 531 PTMPPPVLPPSLPPPVMPPAL-PATVPPPGMPPPVMPPSLPTSVPPPG--MPPSLSSAGP 587



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 12  PRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLRMEGP 71
           P+ PP+   P+ + P  P  +  P+ + P+    A  PS+ SSS S+  S   H +   P
Sbjct: 168 PQPPPSYYPPTSSQPYLPPAQPSPSQSPPSQSYLAPTPSYSSSS-SSSQSYLSHSQSYLP 226

Query: 72  SLQ 74
           S Q
Sbjct: 227 SSQ 229


>gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo
           sapiens]
          Length = 616

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 1   MGAGGSWLLLSPRGPPTALDPSKACPVSPVCEGQPTLA---EPTLPPWAF--GPSFPSSS 55
           MGA G      PRG PT +DP+   P +P C+ +   +   +P  P  A   G SFP + 
Sbjct: 356 MGAQGRL----PRGNPTDMDPTLEDPTAPKCKTRRCSSCSPKPNTPKCAMCDGDSFPFA- 410

Query: 56  RSAGGSVAPHLR 67
              GG     LR
Sbjct: 411 -CTGGEAEDRLR 421


>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
          Length = 1682

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 1   MGAGGSWLLLSPRGPP-TALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAG 59
           +   G+W    P  PP +A  P   C  S    GQP L  P  P        PS    A 
Sbjct: 22  LSCAGAWSSCPPHPPPRSAWLPGGRCSASI---GQPPLPAPLPPSHGSSSGHPSKPYYAP 78

Query: 60  GSVAP---HLRMEGPSLQVCGRTVLR 82
           G+  P   H ++E  SL  C + +LR
Sbjct: 79  GAPTPRPLHGKLE--SLHGCVQALLR 102


>gi|13128980 proline rich 14 [Homo sapiens]
          Length = 585

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 15  PPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPS 53
           PPTA DP+   P +P      +L  P L PW   P F S
Sbjct: 217 PPTAPDPALELPSTPP---PSSLLRPRLSPWGLAPLFRS 252


>gi|169213725 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 23/114 (20%)

Query: 13  RGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLRMEGPS 72
           RGPPT   P    PV P  EG P+        W +G       R AGGS +       P 
Sbjct: 30  RGPPTCQCPDFPYPVPP-SEGCPSGRLLLSLHWDWG-------RGAGGSWSGGAWPGSPG 81

Query: 73  LQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHASSQRLC 126
            +         L+ G   G + ++LGPL      G+AL     GG        C
Sbjct: 82  WR---------LARGPAHGASAESLGPL------GKALVTGWEGGWRGGQGGAC 120


>gi|239756943 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 783

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 98  GPLKGAGRWGRALQPALRGGHHASSQRLCQTLDGGHPDSPCGASL------EAGG---WA 148
           GP +   R  +A       GH  S  RL   L    P +P   S+      +AGG   W 
Sbjct: 461 GPWEQEERQSQAHHQGFVDGHPGSQARLWLALTWDSPPAPLQRSVWGQLQPQAGGGRGWE 520

Query: 149 R--AGWWALLGVPVGGGGEEGTGSLWAPAGCFEASSVG 184
              AG WA  G    GG   GT  L  P    E  ++G
Sbjct: 521 GRGAGRWARPGPGWDGGARAGTQGLPLPGTEAEPGALG 558


>gi|169214202 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 23/114 (20%)

Query: 13  RGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLRMEGPS 72
           RGPPT   P    PV P  EG P+        W +G       R AGGS +       P 
Sbjct: 30  RGPPTCQCPDFPYPVPP-SEGCPSGRLLLSLHWDWG-------RGAGGSWSGGAWPGSPG 81

Query: 73  LQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHASSQRLC 126
            +         L+ G   G + ++LGPL      G+AL     GG        C
Sbjct: 82  WR---------LARGPAHGASAESLGPL------GKALVTGWEGGWRGGQGGAC 120


>gi|239751443 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 783

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 98  GPLKGAGRWGRALQPALRGGHHASSQRLCQTLDGGHPDSPCGASL------EAGG---WA 148
           GP +   R  +A       GH  S  RL   L    P +P   S+      +AGG   W 
Sbjct: 461 GPWEQEERQSQAHHQGFVDGHPGSQARLWLALTWDSPPAPLQRSVWGQLQPQAGGGRGWE 520

Query: 149 R--AGWWALLGVPVGGGGEEGTGSLWAPAGCFEASSVG 184
              AG WA  G    GG   GT  L  P    E  ++G
Sbjct: 521 GRGAGRWARPGPGWDGGARAGTQGLPLPGTEAEPGALG 558


>gi|169171899 PREDICTED: similar to hCG2014367 [Homo sapiens]
          Length = 594

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 1   MGAGGSWLLLSPRGPPTALDPSKACPVSPVCEGQPTLA---EPTLPPWAF--GPSFPSSS 55
           MGA G      PRG PT +DP+   P +P C+ +   +   +P  P  A   G SFP + 
Sbjct: 334 MGAQGRL----PRGNPTDMDPTLEDPTTPKCKMRRCSSCSPKPNTPKCAMCDGDSFPFA- 388

Query: 56  RSAGGSVAPHLR 67
              GG     LR
Sbjct: 389 -CTGGEAKDRLR 399


>gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 23/114 (20%)

Query: 13  RGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAPHLRMEGPS 72
           RGPPT   P    PV P  EG P+        W +G       R AGGS +       P 
Sbjct: 30  RGPPTCQCPDFPYPVPP-SEGCPSGRLLLSLHWDWG-------RGAGGSWSGGAWPGSPG 81

Query: 73  LQVCGRTVLRLLSSGAVSGVTLQTLGPLKGAGRWGRALQPALRGGHHASSQRLC 126
            +         L+ G   G + ++LGPL      G+AL     GG        C
Sbjct: 82  WR---------LARGPAHGASAESLGPL------GKALVTGWEGGWRGGQGGAC 120


>gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo
           sapiens]
          Length = 791

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 98  GPLKGAGRWGRALQPALRGGHHASSQRLCQTLDGGHPDSPCGASL------EAGG---WA 148
           GP +   R  +A       GH  S  RL   L    P +P   S+      +AGG   W 
Sbjct: 469 GPWEQEERQSQAHHQGFVDGHPGSQARLWLALTWDSPPAPLQRSVWGQLQPQAGGGRGWE 528

Query: 149 R--AGWWALLGVPVGGGGEEGTGSLWAPAGCFEASSVG 184
              AG WA  G    GG   GT  L  P    E  ++G
Sbjct: 529 GRGAGRWARPGPGWDGGARAGTQGLPLPGTEAEPGALG 566


>gi|169171130 PREDICTED: hypothetical protein LOC100130600 [Homo
           sapiens]
          Length = 594

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 1   MGAGGSWLLLSPRGPPTALDPSKACPVSPVCEGQPTLA---EPTLPPWAF--GPSFPSSS 55
           MGA G      PRG PT +DP+   P +P C+ +   +   +P  P  A   G SFP + 
Sbjct: 334 MGAQGRL----PRGNPTDMDPTLEDPTTPKCKMRRCSSCSPKPNTPKCAMCDGDSFPFA- 388

Query: 56  RSAGGSVAPHLR 67
              GG     LR
Sbjct: 389 -CTGGEAKDRLR 399


>gi|239509024 PREDICTED: similar to hCG2014367 [Homo sapiens]
          Length = 594

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 1   MGAGGSWLLLSPRGPPTALDPSKACPVSPVCEGQPTLA---EPTLPPWAF--GPSFPSSS 55
           MGA G      PRG PT +DP+   P +P C+ +   +   +P  P  A   G SFP + 
Sbjct: 334 MGAQGRL----PRGNPTDMDPTLEDPTTPKCKMRRCSSCSPKPNTPKCAMCDGDSFPFA- 388

Query: 56  RSAGGSVAPHLR 67
              GG     LR
Sbjct: 389 -CTGGEAKDRLR 399


>gi|71043876 undifferentiated embryonic cell transcription factor
          1 [Homo sapiens]
          Length = 341

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 8  LLLSPRGPPTALDPSKACPVSPVCEGQPTLAEPTLPPWAFGPSFPSSSRSAGGSVAP 64
          +LL PR PP    P+   P SP  E +     P  PP    P+ PS+    G  V+P
Sbjct: 1  MLLRPRRPPPLAPPAPPSPASPDPEPRTPGDAPGTPPRR--PASPSALGELGLPVSP 55


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.138    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,600,516
Number of Sequences: 37866
Number of extensions: 611913
Number of successful extensions: 2873
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 2762
Number of HSP's gapped (non-prelim): 261
length of query: 206
length of database: 18,247,518
effective HSP length: 97
effective length of query: 109
effective length of database: 14,574,516
effective search space: 1588622244
effective search space used: 1588622244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.