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Search of human proteins with 239741880
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741880 PREDICTED: hypothetical protein XP_002342332 [Homo
sapiens]
(176 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753416 PREDICTED: hypothetical protein XP_002345645 [Homo ... 360 e-100
gi|239747980 PREDICTED: hypothetical protein XP_002346488 [Homo ... 360 e-100
gi|239741880 PREDICTED: hypothetical protein XP_002342332 [Homo ... 360 e-100
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens] 63 1e-10
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ... 59 3e-09
gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo ... 59 3e-09
gi|239755822 PREDICTED: hypothetical protein [Homo sapiens] 43 2e-04
gi|239750319 PREDICTED: hypothetical protein [Homo sapiens] 43 2e-04
gi|239744623 PREDICTED: hypothetical protein [Homo sapiens] 43 2e-04
gi|169204760 PREDICTED: hypothetical protein [Homo sapiens] 38 0.004
gi|169205546 PREDICTED: hypothetical protein [Homo sapiens] 38 0.004
gi|169204158 PREDICTED: hypothetical protein [Homo sapiens] 38 0.004
gi|31881785 Hermansky-Pudlak syndrome-6 [Homo sapiens] 30 1.1
gi|9789865 eukaryotic translation initiation factor 4E nuclear i... 29 1.8
gi|21361827 methyltransferase like 3 [Homo sapiens] 29 2.4
gi|239750954 PREDICTED: hypothetical protein XP_002347616 [Homo ... 28 3.1
gi|169168890 PREDICTED: hypothetical protein LOC441172 [Homo sap... 28 3.1
gi|239745360 PREDICTED: hypothetical protein XP_002343446 [Homo ... 28 3.1
gi|169169339 PREDICTED: hypothetical protein LOC441172 [Homo sap... 28 3.1
gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 28 3.1
gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo s... 28 3.1
gi|58197558 tudor domain containing 6 [Homo sapiens] 28 3.1
gi|57222563 colonic and hepatic tumor over-expressed protein iso... 28 3.1
gi|57164942 colonic and hepatic tumor over-expressed protein iso... 28 3.1
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 28 4.1
gi|91825557 kinesin light chain 3 [Homo sapiens] 28 4.1
gi|54792098 erbB-2 isoform b [Homo sapiens] 28 5.4
gi|54792096 erbB-2 isoform a [Homo sapiens] 28 5.4
gi|239756098 PREDICTED: hypothetical protein [Homo sapiens] 28 5.4
gi|209693464 ubiquitin related modifier 1 homolog isoform b [Hom... 28 5.4
>gi|239753416 PREDICTED: hypothetical protein XP_002345645 [Homo
sapiens]
Length = 176
Score = 360 bits (924), Expect = e-100
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MPCDQAGMGYVAVGDHEGWPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQA 60
MPCDQAGMGYVAVGDHEGWPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQA
Sbjct: 1 MPCDQAGMGYVAVGDHEGWPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQA 60
Query: 61 RNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLLVELGHSR 120
RNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLLVELGHSR
Sbjct: 61 RNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLLVELGHSR 120
Query: 121 RLAALEPVHFGGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ 176
RLAALEPVHFGGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ
Sbjct: 121 RLAALEPVHFGGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ 176
>gi|239747980 PREDICTED: hypothetical protein XP_002346488 [Homo
sapiens]
Length = 176
Score = 360 bits (924), Expect = e-100
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MPCDQAGMGYVAVGDHEGWPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQA 60
MPCDQAGMGYVAVGDHEGWPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQA
Sbjct: 1 MPCDQAGMGYVAVGDHEGWPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQA 60
Query: 61 RNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLLVELGHSR 120
RNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLLVELGHSR
Sbjct: 61 RNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLLVELGHSR 120
Query: 121 RLAALEPVHFGGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ 176
RLAALEPVHFGGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ
Sbjct: 121 RLAALEPVHFGGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ 176
>gi|239741880 PREDICTED: hypothetical protein XP_002342332 [Homo
sapiens]
Length = 176
Score = 360 bits (924), Expect = e-100
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MPCDQAGMGYVAVGDHEGWPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQA 60
MPCDQAGMGYVAVGDHEGWPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQA
Sbjct: 1 MPCDQAGMGYVAVGDHEGWPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQA 60
Query: 61 RNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLLVELGHSR 120
RNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLLVELGHSR
Sbjct: 61 RNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLLVELGHSR 120
Query: 121 RLAALEPVHFGGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ 176
RLAALEPVHFGGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ
Sbjct: 121 RLAALEPVHFGGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ 176
>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 63.2 bits (152), Expect = 1e-10
Identities = 48/112 (42%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 66 PEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLLVE-LGHSRRLAA 124
P+P P LSPW + P GP G PL +G + L
Sbjct: 22 PQPQPRSP---LSPWQASPPATSPRAWQLSRGPG-GRSPLPPAPSRGPATCMGAALLLPE 77
Query: 125 LEPVHFGGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ 176
V G + +LLLQEAHL+DVVGEAVI+LLQLHLLVGA +L V VGQ
Sbjct: 78 AHDV-LGQQDLILLLQEAHLVDVVGEAVIQLLQLHLLVGAGVLELGVDGVGQ 128
>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
sapiens]
Length = 446
Score = 58.5 bits (140), Expect = 3e-09
Identities = 32/46 (69%), Positives = 37/46 (80%)
Query: 131 GGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ 176
G + +LLLQEAHL+DVVGEAVI+LLQLHLLVGA +L V VGQ
Sbjct: 232 GQQDLILLLQEAHLVDVVGEAVIQLLQLHLLVGAGVLELGVDGVGQ 277
Score = 56.2 bits (134), Expect = 1e-08
Identities = 24/45 (53%), Positives = 35/45 (77%)
Query: 21 QLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQARNVVL 65
QLPVGGNL+++GHL++EQVLV ++ H +L + + +LQA N VL
Sbjct: 15 QLPVGGNLNVKGHLNIEQVLVFTKVTSHFLLHILNLILQAANSVL 59
>gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo
sapiens]
Length = 446
Score = 58.5 bits (140), Expect = 3e-09
Identities = 32/46 (69%), Positives = 37/46 (80%)
Query: 131 GGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ 176
G + +LLLQEAHL+DVVGEAVI+LLQLHLLVGA +L V VGQ
Sbjct: 232 GQQDLILLLQEAHLVDVVGEAVIQLLQLHLLVGAGVLELGVDGVGQ 277
Score = 56.2 bits (134), Expect = 1e-08
Identities = 24/45 (53%), Positives = 35/45 (77%)
Query: 21 QLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQARNVVL 65
QLPVGGNL+++GHL++EQVLV ++ H +L + + +LQA N VL
Sbjct: 15 QLPVGGNLNVKGHLNIEQVLVFTKVTSHFLLHILNLILQAANSVL 59
>gi|239755822 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 42.7 bits (99), Expect = 2e-04
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 21 QLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQARNVV 64
QL V G+LH+QG L V ++LVL Q GH++L + LLQ +V
Sbjct: 107 QLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQLGQLV 150
>gi|239750319 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 42.7 bits (99), Expect = 2e-04
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 21 QLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQARNVV 64
QL V G+LH+QG L V ++LVL Q GH++L + LLQ +V
Sbjct: 107 QLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQLGQLV 150
>gi|239744623 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 42.7 bits (99), Expect = 2e-04
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 21 QLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQARNVV 64
QL V G+LH+QG L V ++LVL Q GH++L + LLQ +V
Sbjct: 107 QLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQLGQLV 150
>gi|169204760 PREDICTED: hypothetical protein [Homo sapiens]
Length = 498
Score = 38.1 bits (87), Expect = 0.004
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 19 WPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQ 59
+ Q PVGG+L +Q L + Q+LVLAQ+ H++L + LQ
Sbjct: 377 YTQAPVGGDLDVQAQLGIHQLLVLAQLPRHVLLGLLQGTLQ 417
>gi|169205546 PREDICTED: hypothetical protein [Homo sapiens]
Length = 441
Score = 38.1 bits (87), Expect = 0.004
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 19 WPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQ 59
+ Q PVGG+L +Q L + Q+LVLAQ+ H++L + LQ
Sbjct: 320 YTQAPVGGDLDVQAQLGIHQLLVLAQLPRHVLLGLLQGTLQ 360
>gi|169204158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 498
Score = 38.1 bits (87), Expect = 0.004
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 19 WPQLPVGGNLHIQGHLHVEQVLVLAQMAGHLILEVPDFLLQ 59
+ Q PVGG+L +Q L + Q+LVLAQ+ H++L + LQ
Sbjct: 377 YTQAPVGGDLDVQAQLGIHQLLVLAQLPRHVLLGLLQGTLQ 417
>gi|31881785 Hermansky-Pudlak syndrome-6 [Homo sapiens]
Length = 775
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 66 PEPHPNPTFRLLSPWPSDPRK----RGQERGVWGAGPSLGLEPLQVVE 109
P P+P PWP+ P VWGAG G PLQ E
Sbjct: 72 PAGQPSPLDAFFLPWPARPALVLVWESGLAEVWGAGVGPGWRPLQSTE 119
>gi|9789865 eukaryotic translation initiation factor 4E nuclear
import factor 1 [Homo sapiens]
Length = 985
Score = 29.3 bits (64), Expect = 1.8
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 78 SPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLLVELGHSRRLAALEPVHFGGERRVL 137
S W S+P + G G+ P LE L +EQ +L +S A P+ E +V
Sbjct: 338 SRWFSNPSRSGSRSSSLGSTPHEELERLAGLEQAILSPGQNSGNYFAPIPLEDHAENKV- 396
Query: 138 LLQEAHLLDVVGEAVIELLQLHLLVGARGQKL 169
+L+++ +A ++L L + A +KL
Sbjct: 397 -----DILEMLQKAKVDLKPLLSSLSANKEKL 423
>gi|21361827 methyltransferase like 3 [Homo sapiens]
Length = 580
Score = 28.9 bits (63), Expect = 2.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 66 PEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEP 104
PE +PTFR SP P+ P G + A P L +P
Sbjct: 38 PEAALSPTFRSDSPVPTAPTSGGPKPSTASAVPELATDP 76
>gi|239750954 PREDICTED: hypothetical protein XP_002347616 [Homo
sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 3.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 75 RLLSPWPSDPRKRGQERGVWGAGPSLGLEP 104
+LL WP P +G WGAGP+ P
Sbjct: 115 QLLQTWPEAPLCGRPGQGAWGAGPTREAPP 144
>gi|169168890 PREDICTED: hypothetical protein LOC441172 [Homo
sapiens]
Length = 324
Score = 28.5 bits (62), Expect = 3.1
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 16/61 (26%)
Query: 58 LQARNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGV---------WGAGPSLGLEPLQVV 108
++AR+ V P HP PT LL+ KRG E G W P+LGL P V
Sbjct: 161 VRARSFVPPRCHP-PTAHLLAG------KRGVEAGSKACTELDLWWNGSPTLGLIPHMVS 213
Query: 109 E 109
E
Sbjct: 214 E 214
>gi|239745360 PREDICTED: hypothetical protein XP_002343446 [Homo
sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 3.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 75 RLLSPWPSDPRKRGQERGVWGAGPSLGLEP 104
+LL WP P +G WGAGP+ P
Sbjct: 115 QLLQTWPEAPLCGRPGQGAWGAGPTREAPP 144
>gi|169169339 PREDICTED: hypothetical protein LOC441172 [Homo
sapiens]
Length = 324
Score = 28.5 bits (62), Expect = 3.1
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 16/61 (26%)
Query: 58 LQARNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGV---------WGAGPSLGLEPLQVV 108
++AR+ V P HP PT LL+ KRG E G W P+LGL P V
Sbjct: 161 VRARSFVPPRCHP-PTAHLLAG------KRGVEAGSKACTELDLWWNGSPTLGLIPHMVS 213
Query: 109 E 109
E
Sbjct: 214 E 214
>gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo
sapiens]
Length = 1074
Score = 28.5 bits (62), Expect = 3.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 70 PNPTFRLLSPWPSDPRKRGQE-RGVWGAG 97
P R P+PS PR RGQ+ +G WG G
Sbjct: 292 PQVAGRRPDPFPSVPRGRGQQGQGPWGTG 320
>gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo
sapiens]
Length = 877
Score = 28.5 bits (62), Expect = 3.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 70 PNPTFRLLSPWPSDPRKRGQE-RGVWGAG 97
P R P+PS PR RGQ+ +G WG G
Sbjct: 292 PQVAGRRPDPFPSVPRGRGQQGQGPWGTG 320
>gi|58197558 tudor domain containing 6 [Homo sapiens]
Length = 2096
Score = 28.5 bits (62), Expect = 3.1
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 6 AGMGYVAVGDHEGWPQLPVGGNLHIQG---HLHVEQVLVLAQMAGHLILEVPDFLLQARN 62
AG G + + WP V ++QG H V VL+L ++ ++LEVPD Q R
Sbjct: 137 AGCGAGSGEPPQHWPADAVDFLSNLQGKEVHGCVLDVLLLHRL---VLLEVPDVFQQMRE 193
Query: 63 VVLPEPHPNPTFRLL 77
+ L P+ FR L
Sbjct: 194 LGLARRVPDSLFRSL 208
>gi|57222563 colonic and hepatic tumor over-expressed protein
isoform b [Homo sapiens]
Length = 1972
Score = 28.5 bits (62), Expect = 3.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 68 PHPNPTFRLLSPWPSDPRKRGQERGVWGAGPS-----LGLEPLQVVEQLLLVELGHSRRL 122
P P P + + P K+G+ GAG + GLE ++VE L +E+ +
Sbjct: 538 PKPGPLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIVEPELSIEVCEEKAS 597
Query: 123 AALEP 127
A L P
Sbjct: 598 AVLPP 602
>gi|57164942 colonic and hepatic tumor over-expressed protein
isoform a [Homo sapiens]
Length = 2032
Score = 28.5 bits (62), Expect = 3.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 68 PHPNPTFRLLSPWPSDPRKRGQERGVWGAGPS-----LGLEPLQVVEQLLLVELGHSRRL 122
P P P + + P K+G+ GAG + GLE ++VE L +E+ +
Sbjct: 538 PKPGPLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIVEPELSIEVCEEKAS 597
Query: 123 AALEP 127
A L P
Sbjct: 598 AVLPP 602
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 28.1 bits (61), Expect = 4.1
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 54 PDFLLQARNVVLPEPHPNPTFRLLSPWPSDPRKRGQERGVWGAGPSLGLEPLQVVEQLLL 113
P +A V P P P P + SP P + G RG G P ++ + +
Sbjct: 12 PTMTEKAEMVCAPSPAPAPPPKPASPGPPQVEEVG-HRG--------GSSPPRLPPGVPV 62
Query: 114 VELGHSRRLAALEPVHFGGERRVLLLQ 140
+ LGHSR P G R LLQ
Sbjct: 63 ISLGHSRPPGVAMPTTELGTLRPPLLQ 89
>gi|91825557 kinesin light chain 3 [Homo sapiens]
Length = 504
Score = 28.1 bits (61), Expect = 4.1
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 95 GAGPSLGLEPLQVVEQLLLVELGHSRRLAALEPVHFG-GERRVLLLQEAHL 144
G GP+ GLE L+ +Q+ + HS LE + G GE +VLL AH+
Sbjct: 54 GQGPAAGLEMLEEKQQV----VSHS-----LEAIELGLGEAQVLLALSAHV 95
>gi|54792098 erbB-2 isoform b [Homo sapiens]
Length = 1225
Score = 27.7 bits (60), Expect = 5.4
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 51 LEVPDFLLQARNVVLPEPHP----NPTFRLLSPWPSDPRKRGQERGVWGAGPS 99
+E P++L P+PHP +P F L W DP +RG + P+
Sbjct: 1161 VENPEYLTPQGGAA-PQPHPPPAFSPAFDNLYYWDQDPPERGAPPSTFKGTPT 1212
>gi|54792096 erbB-2 isoform a [Homo sapiens]
Length = 1255
Score = 27.7 bits (60), Expect = 5.4
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 51 LEVPDFLLQARNVVLPEPHP----NPTFRLLSPWPSDPRKRGQERGVWGAGPS 99
+E P++L P+PHP +P F L W DP +RG + P+
Sbjct: 1191 VENPEYLTPQGGAA-PQPHPPPAFSPAFDNLYYWDQDPPERGAPPSTFKGTPT 1242
>gi|239756098 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 27.7 bits (60), Expect = 5.4
Identities = 19/50 (38%), Positives = 21/50 (42%)
Query: 127 PVHFGGERRVLLLQEAHLLDVVGEAVIELLQLHLLVGARGQKLLVHRVGQ 176
P + G R Q AHLL VV E + LHL GQ L GQ
Sbjct: 56 PSYVPGSERTRARQAAHLLQVVLEVEESQVSLHLADHFHGQCLFFMDDGQ 105
>gi|209693464 ubiquitin related modifier 1 homolog isoform b [Homo
sapiens]
Length = 146
Score = 27.7 bits (60), Expect = 5.4
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 66 PEPHPNPTFRLL-SPWPSDPRKRGQERGVWGAG 97
P PH +PT RLL SP P + + G WG G
Sbjct: 114 PPPHSSPTLRLLESPTPGE-----EGMGSWGHG 141
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.143 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,584,926
Number of Sequences: 37866
Number of extensions: 383034
Number of successful extensions: 1015
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 45
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.