Guide to the Human Genome
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Name: LOC100129218 Sequence: fasta or formatted (612aa) NCBI GI: 239750319
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {612aa} PREDICTED: hypothetical protein
alt prot {612aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         60           2
 C cysteine            1.3          8           1
 D aspartate           4.7         29           2
 E glutamate           7.2         44           1
 F phenylalanine       1.6         10           1
 G glycine             8.7         53           2
 H histidine           3.8         23           2
 I isoleucine          3.8         23           3
 K lysine              3.4         21           2
 L leucine            12.3         75           3
 M methionine          0.7          4           1
 N asparagine          1.0          6           1
 P proline             7.4         45           3
 Q glutamine           8.3         51           2
 R arginine            4.9         30           3
 S serine              7.5         46           2
 T threonine           6.0         37           3
 V valine              6.2         38           2
 W tryptophan          1.0          6           1
 Y tyrosine            0.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129218          1.000   PREDICTED: hypothetical protein 
LOC100129218          0.996   PREDICTED: hypothetical protein 
LOC100288809          0.050   PREDICTED: hypothetical protein XP_002343208 
LOC100129509          0.047   PREDICTED: hypothetical protein 
LOC100129509          0.047   PREDICTED: hypothetical protein 
LOC100129509          0.047   PREDICTED: hypothetical protein 
LOC100132635          0.021   PREDICTED: similar to mucin 5, partial 
LOC729792             0.017   PREDICTED: hypothetical protein 
LOC729792             0.017   PREDICTED: hypothetical protein 
LOC729792             0.017   PREDICTED: hypothetical protein 
LOC100294501          0.017   PREDICTED: hypothetical protein 
LOC100294238          0.017   PREDICTED: hypothetical protein 
LOC100294204          0.017   PREDICTED: hypothetical protein 
LOC100294136          0.017   PREDICTED: hypothetical protein 
LOC100294091          0.017   PREDICTED: hypothetical protein 
LOC730401             0.017   PREDICTED: hypothetical protein 
MUC5AC                0.016   mucin 5AC 
MUC5B                 0.016   mucin 5, subtype B, tracheobronchial 
MUC6                  0.016   mucin 6, gastric 
LOC100291560          0.015   PREDICTED: hypothetical protein XP_002345645 
LOC100289976          0.015   PREDICTED: hypothetical protein XP_002346488 
LOC100288941          0.015   PREDICTED: hypothetical protein XP_002342332 
LOC100291384          0.014   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.014   PREDICTED: hypothetical protein XP_002343004 
TMEM108               0.014   transmembrane protein 108 
TMEM108               0.014   transmembrane protein 108 
LOC100294249          0.014   PREDICTED: hypothetical protein XP_002344067 
PRG4                  0.013   proteoglycan 4 isoform D 
PRG4                  0.013   proteoglycan 4 isoform C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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