Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288941 Sequence: fasta or formatted (176aa) NCBI GI: 239741880
Description:

PREDICTED: hypothetical protein XP_002342332

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         11           2
 C cysteine            0.6          1           1
 D aspartate           2.8          5           1
 E glutamate           7.4         13           1
 F phenylalanine       1.7          3           1
 G glycine            11.4         20           2
 H histidine           6.2         11           1
 I isoleucine          1.7          3           1
 K lysine              1.1          2           1
 L leucine            18.8         33           3
 M methionine          1.7          3           1
 N asparagine          1.7          3           1
 P proline             8.0         14           1
 Q glutamine           7.4         13           1
 R arginine            6.2         11           2
 S serine              2.3          4           1
 T threonine           0.6          1           1
 V valine             11.9         21           2
 W tryptophan          1.7          3           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342332 
LOC100291560          1.000   PREDICTED: hypothetical protein XP_002345645 
LOC100289976          1.000   PREDICTED: hypothetical protein XP_002346488 
LOC100292292          0.113   PREDICTED: hypothetical protein 
LOC100291384          0.101   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.101   PREDICTED: hypothetical protein XP_002343004 
LOC100129218          0.054   PREDICTED: hypothetical protein 
LOC100129218          0.054   PREDICTED: hypothetical protein 
LOC100129218          0.054   PREDICTED: hypothetical protein 
LOC100129509          0.039   PREDICTED: hypothetical protein 
LOC100129509          0.039   PREDICTED: hypothetical protein 
LOC100129509          0.039   PREDICTED: hypothetical protein 
HPS6                  0.015   Hermansky-Pudlak syndrome-6 
EIF4ENIF1             0.012   eukaryotic translation initiation factor 4E nuclear i...
METTL3                0.012   methyltransferase like 3 
LOC100290436          0.009   PREDICTED: hypothetical protein XP_002347616 
FLJ46906              0.009   PREDICTED: hypothetical protein LOC441172 
LOC100287267          0.009   PREDICTED: hypothetical protein XP_002343446 
FLJ46906              0.009   PREDICTED: hypothetical protein LOC441172 
ADAMTSL4              0.009   thrombospondin repeat containing 1 isoform 1 
ADAMTSL4              0.009   thrombospondin repeat containing 1 isoform 2 
TDRD6                 0.009   tudor domain containing 6 
CKAP5                 0.009   colonic and hepatic tumor over-expressed protein iso...
CKAP5                 0.009   colonic and hepatic tumor over-expressed protein iso...
LYL1                  0.009   lymphoblastic leukemia derived sequence 1 
KLC3                  0.009   kinesin light chain 3 
ERBB2                 0.009   erbB-2 isoform b 
ERBB2                 0.009   erbB-2 isoform a 
LOC100293412          0.009   PREDICTED: hypothetical protein 
URM1                  0.009   ubiquitin related modifier 1 homolog isoform b [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press