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Search of human proteins with 239741846
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741846 PREDICTED: similar to DnaJ (Hsp40) homolog,
subfamily C, member 17 [Homo sapiens]
(181 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747951 PREDICTED: similar to hCG1642995 [Homo sapiens] 360 e-100
gi|239741846 PREDICTED: similar to DnaJ (Hsp40) homolog, subfami... 360 e-100
gi|169164468 PREDICTED: similar to hCG1642995 [Homo sapiens] 358 1e-99
gi|8922563 DnaJ (Hsp40) homolog, subfamily C, member 17 [Homo sa... 183 6e-47
gi|221219020 NYD-SP11 protein [Homo sapiens] 37 0.012
gi|115648142 centrosomal protein 164kDa [Homo sapiens] 37 0.012
gi|148596968 tripartite motif-containing 8 [Homo sapiens] 35 0.035
gi|119943096 dopamine receptor interacting protein [Homo sapiens] 33 0.13
gi|191252785 centrobin, centrosomal BRCA2 interacting protein is... 33 0.13
gi|80861396 centrobin, centrosomal BRCA2 interacting protein iso... 33 0.13
gi|6631085 DnaJ (Hsp40) homolog, subfamily B, member 4 [Homo sap... 33 0.17
gi|21264602 laminin alpha 5 [Homo sapiens] 32 0.23
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li... 31 0.51
gi|148746195 trichohyalin [Homo sapiens] 31 0.51
gi|117414154 sodium channel associated protein 2 isoform b [Homo... 31 0.51
gi|117414162 sodium channel associated protein 2 isoform a [Homo... 31 0.51
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso... 31 0.51
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso... 31 0.51
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 31 0.66
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 31 0.66
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 31 0.66
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 31 0.66
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 31 0.66
gi|156104874 envoplakin [Homo sapiens] 31 0.66
gi|110431370 espin [Homo sapiens] 31 0.66
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 31 0.66
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 31 0.66
gi|4505143 cytosolic malic enzyme 1 [Homo sapiens] 30 0.87
gi|58530840 desmoplakin isoform I [Homo sapiens] 30 0.87
gi|24308179 CTTNBP2 N-terminal like [Homo sapiens] 30 0.87
>gi|239747951 PREDICTED: similar to hCG1642995 [Homo sapiens]
Length = 181
Score = 360 bits (924), Expect = e-100
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MDLYALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIK 60
MDLYALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIK
Sbjct: 1 MDLYALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIK 60
Query: 61 RLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLVDNPLK 120
RLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLVDNPLK
Sbjct: 61 RLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLVDNPLK 120
Query: 121 ISWLEGQPQSTVGPSRPALSKGSVLSVREYESVIVMHMRHAAELQWLISDMHQQDREGQP 180
ISWLEGQPQSTVGPSRPALSKGSVLSVREYESVIVMHMRHAAELQWLISDMHQQDREGQP
Sbjct: 121 ISWLEGQPQSTVGPSRPALSKGSVLSVREYESVIVMHMRHAAELQWLISDMHQQDREGQP 180
Query: 181 T 181
T
Sbjct: 181 T 181
>gi|239741846 PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily
C, member 17 [Homo sapiens]
Length = 181
Score = 360 bits (924), Expect = e-100
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MDLYALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIK 60
MDLYALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIK
Sbjct: 1 MDLYALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIK 60
Query: 61 RLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLVDNPLK 120
RLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLVDNPLK
Sbjct: 61 RLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLVDNPLK 120
Query: 121 ISWLEGQPQSTVGPSRPALSKGSVLSVREYESVIVMHMRHAAELQWLISDMHQQDREGQP 180
ISWLEGQPQSTVGPSRPALSKGSVLSVREYESVIVMHMRHAAELQWLISDMHQQDREGQP
Sbjct: 121 ISWLEGQPQSTVGPSRPALSKGSVLSVREYESVIVMHMRHAAELQWLISDMHQQDREGQP 180
Query: 181 T 181
T
Sbjct: 181 T 181
>gi|169164468 PREDICTED: similar to hCG1642995 [Homo sapiens]
Length = 181
Score = 358 bits (920), Expect = 1e-99
Identities = 180/181 (99%), Positives = 181/181 (100%)
Query: 1 MDLYALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIK 60
MDLYALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIK
Sbjct: 1 MDLYALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIK 60
Query: 61 RLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLVDNPLK 120
RLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLV+NPLK
Sbjct: 61 RLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLVENPLK 120
Query: 121 ISWLEGQPQSTVGPSRPALSKGSVLSVREYESVIVMHMRHAAELQWLISDMHQQDREGQP 180
ISWLEGQPQSTVGPSRPALSKGSVLSVREYESVIVMHMRHAAELQWLISDMHQQDREGQP
Sbjct: 121 ISWLEGQPQSTVGPSRPALSKGSVLSVREYESVIVMHMRHAAELQWLISDMHQQDREGQP 180
Query: 181 T 181
T
Sbjct: 181 T 181
>gi|8922563 DnaJ (Hsp40) homolog, subfamily C, member 17 [Homo
sapiens]
Length = 304
Score = 183 bits (465), Expect = 6e-47
Identities = 132/296 (44%), Positives = 147/296 (49%), Gaps = 116/296 (39%)
Query: 1 MDLYALLDIEEKVADKEVEKAYRQKASSCYP----------ELFHWQLNSSTSIL----- 45
MDLYALL IEEK ADKEV+KAYRQKA SC+P ELFH QL+ + +L
Sbjct: 10 MDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFH-QLSQALEVLTDAAA 68
Query: 46 -------------------------RPWSLSTRTLER---------------------EI 59
+ L ER EI
Sbjct: 69 RAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEESRSTRTLEQEI 128
Query: 60 KRLSEEGSRQLEEEQRLIWEQIHQERDQ-------------------------------- 87
+RL EEGSRQLEE+QRLI EQI QERDQ
Sbjct: 129 ERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENTEGQGTPKLKLKWKCKKEDESKGG 188
Query: 88 -SKKV---------------------GTAVVEFATAKAAELAVQNEVGLVDNPLKISWLE 125
SK V GTAVVEFAT KAAELAVQNEVGLVDNPLKISWLE
Sbjct: 189 YSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 248
Query: 126 GQPQSTVGPSRPALSKGSVLSVREYESVIVMHMRHAAELQWLISDMHQQDREGQPT 181
GQPQ VG S LSKGSVLS R+YES+++M MR AAE Q LI+ M Q+D+EG PT
Sbjct: 249 GQPQDAVGRSHSGLSKGSVLSERDYESLVMMRMRQAAERQQLIARMQQEDQEGPPT 304
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 36.6 bits (83), Expect = 0.012
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 54 TLEREIKRLSEEGSRQLEEEQRLI-----WEQIHQERDQSKKVGTAVVEFATAKAAELAV 108
TLE E+ R EE +Q+ EEQR I W +IH++R +++K A E A+ E
Sbjct: 1545 TLEEEVSREGEEKEQQVTEEQRHIQEEHKWARIHRKRARAEK-KRAQEERKLAQEEEKLA 1603
Query: 109 QNEVGLVDNPLKIS 122
Q E L K++
Sbjct: 1604 QEERQLAQEERKLA 1617
Score = 28.5 bits (62), Expect = 3.3
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 16/151 (10%)
Query: 8 DIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGS 67
D EE ++EV + +K E H Q W+ R R K+ ++E
Sbjct: 1540 DEEEVTLEEEVSREGEEKEQQVTEEQRHIQEEHK------WARIHRKRARAEKKRAQEER 1593
Query: 68 RQLEEEQRLIWEQIHQERDQSKKVGTAVVEFA-----TAKAAELAVQNEVGLVDNPLKIS 122
+ +EE++L E+ Q + +K+ A V+ A+A Q E L K+S
Sbjct: 1594 KLAQEEEKLAQEE-RQLAQEERKLAQAYVKITQDDREMAQAEGKFAQKEETLAQRGEKLS 1652
Query: 123 WLEGQPQSTVGPSRPALSKGSVLSVREYESV 153
Q + R L+K RE E +
Sbjct: 1653 ----QEAEKLAQKRKKLAKKWEKVAREEEKL 1679
>gi|115648142 centrosomal protein 164kDa [Homo sapiens]
Length = 1460
Score = 36.6 bits (83), Expect = 0.012
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 36/186 (19%)
Query: 9 IEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSR 68
+ EK+ +E E+ R H Q S S LR ER K + EE +R
Sbjct: 621 LREKLCQEEEEEILR----------LHQQKEQSLSSLR---------ERLQKAIEEEEAR 661
Query: 69 QLEEE-QRLIW-------------EQIHQERDQS-KKVGTAVVEFATAKAAELAVQNEVG 113
EEE QRL W +QI E++ S +K+ + A+ A L +N
Sbjct: 662 MREEESQRLSWLRAQVQSSTQADEDQIRAEQEASLQKLREELESQQKAERASLEQKNRQM 721
Query: 114 LVDNPLKISWLEGQPQSTVGPSRP-ALSK-GSVLSVREYESVIVMHMRHAAELQWLISDM 171
L +I E Q+ + ++ AL + L E+V + H+AEL+ L S +
Sbjct: 722 LEQLKEEIEASEKSEQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAELERLCSSL 781
Query: 172 HQQDRE 177
+ RE
Sbjct: 782 EAKHRE 787
>gi|148596968 tripartite motif-containing 8 [Homo sapiens]
Length = 551
Score = 35.0 bits (79), Expect = 0.035
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 60 KRLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAK 102
KRL EE QL+EE RL +E++HQ D+ + V++ A AK
Sbjct: 218 KRLVEEKVNQLKEEVRLQYEKLHQLLDEDLRQTVEVLDKAQAK 260
>gi|119943096 dopamine receptor interacting protein [Homo sapiens]
Length = 702
Score = 33.1 bits (74), Expect = 0.13
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 4 YALLDIEEKVADKEVEKAYRQKASSCYPEL-FHWQLNSSTSILR-PWSL---STRTLERE 58
+ +L +E +D E++KAYRQ A +P+ H + + +LR W + + + E E
Sbjct: 445 FHVLGVEATASDVELKKAYRQLAVMVHPDKNHHPRAEEAFKVLRAAWDIVSNAEKRKEYE 504
Query: 59 IKRLSE-EGSRQLEE 72
+KR++E E SR + E
Sbjct: 505 MKRMAENELSRSVNE 519
>gi|191252785 centrobin, centrosomal BRCA2 interacting protein
isoform alpha [Homo sapiens]
Length = 903
Score = 33.1 bits (74), Expect = 0.13
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 14/142 (9%)
Query: 48 WSLSTRTLEREIKRLSEEGSRQLEEEQ-------RLIWEQIHQERDQSKKVGTAVVEFAT 100
W+ L+ + L EE QLE E+ + WE HQ +V E T
Sbjct: 362 WAQQEHQLKEHYQALQEESQAQLEREKEKSQREAQAAWETQHQLALVQSEVRRLEGELDT 421
Query: 101 AKAAELAVQNEVGLVDNPLKISWLEGQPQSTVGPSR---PALSKGSVLSVREYESVIVMH 157
A+ A+Q E+ LV + ++ + + V + L++ S+R+ S+ H
Sbjct: 422 ARRERDALQLEMSLVQARYESQRIQLESELAVQLEQRVTERLAQAQESSLRQAASLREHH 481
Query: 158 MRHAAELQWLISDMHQQDREGQ 179
+ +L S HQQ+ Q
Sbjct: 482 RKQLQDL----SGQHQQELASQ 499
>gi|80861396 centrobin, centrosomal BRCA2 interacting protein
isoform beta [Homo sapiens]
Length = 925
Score = 33.1 bits (74), Expect = 0.13
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 14/142 (9%)
Query: 48 WSLSTRTLEREIKRLSEEGSRQLEEEQ-------RLIWEQIHQERDQSKKVGTAVVEFAT 100
W+ L+ + L EE QLE E+ + WE HQ +V E T
Sbjct: 362 WAQQEHQLKEHYQALQEESQAQLEREKEKSQREAQAAWETQHQLALVQSEVRRLEGELDT 421
Query: 101 AKAAELAVQNEVGLVDNPLKISWLEGQPQSTVGPSR---PALSKGSVLSVREYESVIVMH 157
A+ A+Q E+ LV + ++ + + V + L++ S+R+ S+ H
Sbjct: 422 ARRERDALQLEMSLVQARYESQRIQLESELAVQLEQRVTERLAQAQESSLRQAASLREHH 481
Query: 158 MRHAAELQWLISDMHQQDREGQ 179
+ +L S HQQ+ Q
Sbjct: 482 RKQLQDL----SGQHQQELASQ 499
>gi|6631085 DnaJ (Hsp40) homolog, subfamily B, member 4 [Homo
sapiens]
Length = 337
Score = 32.7 bits (73), Expect = 0.17
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 2 DLYALLDIEEKVADKEVEKAYRQKASSCYPE 32
D Y +L IE+ +D++++KAYR++A +P+
Sbjct: 4 DYYCILGIEKGASDEDIKKAYRKQALKFHPD 34
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 32.3 bits (72), Expect = 0.23
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 64 EEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLVDNPLKISW 123
E+ R L E +RL+WE +++ +G A A+A A Q + V L W
Sbjct: 2310 EQLLRTLAEVERLLWEM------RARDLGAPQ---AAAEAELAAAQRLLARVQEQLSSLW 2360
Query: 124 LEGQPQSTVGPSRPALSKGSVLSVREYESVIVMHMRHAAEL 164
E Q +T R A + ++ +RE + V R A EL
Sbjct: 2361 EENQALATQTRDRLAQHEAGLMDLREALNRAVDATREAQEL 2401
>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 828
Score = 31.2 bits (69), Expect = 0.51
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 10 EEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSRQ 69
EEK+ ++E EK + Q+ E W+ + W +E + + E +
Sbjct: 587 EEKMREQE-EKMWEQEEKMQEQEEKMWEQEE-----KMWEQEEEDKMQEQEEMMWEQEEK 640
Query: 70 LEEEQRLIWEQIHQERDQSKKV 91
++E++ +WEQ + R+Q +K+
Sbjct: 641 MQEQEEKMWEQEEKMREQEEKM 662
Score = 30.0 bits (66), Expect = 1.1
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 10 EEKVADKEVEKAYRQKASSCYPE----LFHWQLNSSTSILRPWSLSTRTLEREIKRLSE- 64
+EK K+ EK +RQ+ E ++ LR R E+E++ +
Sbjct: 246 QEKKIRKQEEKMWRQEERLREQEGKMREQEEKMRRQEKRLREQEKELREQEKELREQKKL 305
Query: 65 -EGSRQLEEEQRLIWEQIHQERDQSKKV 91
E Q++E++ +WEQ + R+Q +K+
Sbjct: 306 REQEEQMQEQEEKMWEQEEKMREQEEKM 333
Score = 29.6 bits (65), Expect = 1.5
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 10 EEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSRQ 69
EE++ ++ EK Q+ E W+ + E+E K +E +
Sbjct: 572 EEEMMREQEEKMQEQEEKMREQEEKMWEQEEKMQ-----EQEEKMWEQEEKMWEQEEEDK 626
Query: 70 LEEEQRLIWEQIHQERDQSKKV 91
++E++ ++WEQ + ++Q +K+
Sbjct: 627 MQEQEEMMWEQEEKMQEQEEKM 648
Score = 27.3 bits (59), Expect = 7.3
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 10 EEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSRQ 69
EE+ ++ EK +Q+ + E WQ + L + ++L E+ +
Sbjct: 404 EEETMREQEEKMQKQEENMWEQEEKEWQ--------------QQRLPEQKEKLWEQ--EK 447
Query: 70 LEEEQRLIWEQIHQERDQSKKVG 92
++E++ IWEQ + RDQ + G
Sbjct: 448 MQEQEEKIWEQEEKIRDQEEMWG 470
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 31.2 bits (69), Expect = 0.51
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 10 EEKVADKEVEKAYRQKASSCYPELFHWQLNSST--------SILRPWSLSTRTLEREIKR 61
E+++A++E E+A R++ S P+ + WQL S S R R E+E KR
Sbjct: 682 EQELAEEEQEQA-RERIKSRIPK-WQWQLESEADARQSKVYSRPRKQEGQRRRQEQEEKR 739
Query: 62 LSEEGSRQLEEEQRLIWEQIHQER 85
E Q +EE+R +Q +E+
Sbjct: 740 RRRESELQWQEEERAHRQQQEEEQ 763
Score = 27.7 bits (60), Expect = 5.6
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 10 EEKVADKEVEKAYRQKASSCY--PELFHWQLNSSTSILRPWSLST--RTLEREIKRLSEE 65
EE++ +E E+ RQ+ Y E F Q S W R ERE K E
Sbjct: 1825 EEQLQLEEQEQRLRQERDRQYRAEEQFATQEKSRREEQELWQEEEQKRRQERERKLREEH 1884
Query: 66 GSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQN 110
RQ +EEQR Q+ + + Q K ++E T + A + V++
Sbjct: 1885 IRRQQKEEQR--HRQVGEIKSQEGKGHGRLLEPGTHQFASVPVRS 1927
Score = 27.3 bits (59), Expect = 7.3
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 2 DLYALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTL-----E 56
DL LL E++ D+E E+ Q+ +PE + R S E
Sbjct: 1266 DLQHLLG-EQQERDREQERRRWQQRDRHFPEEEQLEREEQKEAKRRDRKSQEEKQLLREE 1324
Query: 57 REIKRLSEEGSRQLEEEQRLIWEQ-----IHQERDQ 87
RE KR +E R+ EE++L+ E+ QERD+
Sbjct: 1325 REEKRRRQETDRKFREEEQLLQEREEQPLRRQERDR 1360
>gi|117414154 sodium channel associated protein 2 isoform b [Homo
sapiens]
Length = 939
Score = 31.2 bits (69), Expect = 0.51
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 9 IEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSR 68
+++++ KEVE +KA S +H + + E + K+L E +
Sbjct: 789 LKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDK 848
Query: 69 QLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLVDNPLKISWLE 125
+E Q+ E++H D K+ A+VE A+ A+LA + + + LK+ +E
Sbjct: 849 SIEL-QKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKCIDSANLKVHQIE 904
>gi|117414162 sodium channel associated protein 2 isoform a [Homo
sapiens]
Length = 1032
Score = 31.2 bits (69), Expect = 0.51
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 9 IEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSR 68
+++++ KEVE +KA S +H + + E + K+L E +
Sbjct: 882 LKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDK 941
Query: 69 QLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEVGLVDNPLKISWLE 125
+E Q+ E++H D K+ A+VE A+ A+LA + + + LK+ +E
Sbjct: 942 SIEL-QKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKCIDSANLKVHQIE 997
>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3p [Homo sapiens]
Length = 476
Score = 31.2 bits (69), Expect = 0.51
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 53 RTLEREIKRLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEV 112
R E E KRL EE R+ EE+R +E D+ KK+ V K E + E
Sbjct: 240 RRRELEKKRLREEEKRRRREEERC----KKKETDKQKKIAEKEVRIKLLKKPE---KGEE 292
Query: 113 GLVDNPLKISWLEGQPQSTVGPSRPALSKGSVLSVREYE 151
+ P + G+ T G + + + G+V+ R E
Sbjct: 293 PTTEKPKE----RGEEIDTGGGKQESCAPGAVVKARPME 327
>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3pdelta [Homo sapiens]
Length = 443
Score = 31.2 bits (69), Expect = 0.51
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 53 RTLEREIKRLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAAELAVQNEV 112
R E E KRL EE R+ EE+R +E D+ KK+ V K E + E
Sbjct: 207 RRRELEKKRLREEEKRRRREEERC----KKKETDKQKKIAEKEVRIKLLKKPE---KGEE 259
Query: 113 GLVDNPLKISWLEGQPQSTVGPSRPALSKGSVLSVREYE 151
+ P + G+ T G + + + G+V+ R E
Sbjct: 260 PTTEKPKE----RGEEIDTGGGKQESCAPGAVVKARPME 294
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 30.8 bits (68), Expect = 0.66
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 10 EEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSRQ 69
+E + + ++ +Q A P W S+T+ + S +T +L EI++L EE RQ
Sbjct: 897 QEALRRLQQQQQQQQLAQMKLPSSSTWGQQSNTTACQ--SQATLSLA-EIQKLEEERERQ 953
Query: 70 LEEEQRL----IWEQIHQERDQSKK 90
L EEQR + + + Q++ Q ++
Sbjct: 954 LREEQRRQQRELMKALQQQQQQQQQ 978
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sapiens]
Length = 1320
Score = 30.8 bits (68), Expect = 0.66
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 10 EEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSRQ 69
+E + + ++ +Q A P W S+T+ + S +T +L EI++L EE RQ
Sbjct: 924 QEALRRLQQQQQQQQLAQMKLPSSSTWGQQSNTTACQ--SQATLSLA-EIQKLEEERERQ 980
Query: 70 LEEEQRL----IWEQIHQERDQSKK 90
L EEQR + + + Q++ Q ++
Sbjct: 981 LREEQRRQQRELMKALQQQQQQQQQ 1005
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 30.8 bits (68), Expect = 0.66
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 10 EEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSRQ 69
+E + + ++ +Q A P W S+T+ + S +T +L EI++L EE RQ
Sbjct: 903 QEALRRLQQQQQQQQLAQMKLPSSSTWGQQSNTTACQ--SQATLSLA-EIQKLEEERERQ 959
Query: 70 LEEEQRL----IWEQIHQERDQSKK 90
L EEQR + + + Q++ Q ++
Sbjct: 960 LREEQRRQQRELMKALQQQQQQQQQ 984
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 30.8 bits (68), Expect = 0.66
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 10 EEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSRQ 69
+E + + ++ +Q A P W S+T+ + S +T +L EI++L EE RQ
Sbjct: 903 QEALRRLQQQQQQQQLAQMKLPSSSTWGQQSNTTACQ--SQATLSLA-EIQKLEEERERQ 959
Query: 70 LEEEQRL----IWEQIHQERDQSKK 90
L EEQR + + + Q++ Q ++
Sbjct: 960 LREEQRRQQRELMKALQQQQQQQQQ 984
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 30.8 bits (68), Expect = 0.66
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 10 EEKVADKEVEKAYRQK-------ASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRL 62
+EK K+ EK +RQ+ E W+ LR R E+E++
Sbjct: 284 QEKKIRKQEEKMWRQEERLREQEGKMREQEEKMWRQEKR---LREQEKELREQEKELREQ 340
Query: 63 SE--EGSRQLEEEQRLIWEQIHQERDQSKKV 91
E E Q++E++ +WEQ + R+Q +K+
Sbjct: 341 KELREQEEQMQEQEEKMWEQEEKMREQEEKM 371
Score = 29.6 bits (65), Expect = 1.5
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 10 EEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSRQ 69
EE++ ++ EK Q+ E W+ + W + E++ RL E+ +
Sbjct: 725 EEEMMREQEEKMQEQEEKMQEQEEEMWEQEE-----KMWEQEEKMWEQQ--RLPEQKEKL 777
Query: 70 LE----EEQRLIWEQIHQERDQSKKV 91
E +EQ IWEQ + RDQ +K+
Sbjct: 778 WEHEKMQEQEKIWEQEEKMRDQEEKM 803
Score = 27.3 bits (59), Expect = 7.3
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 10 EEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSRQ 69
EE+ ++ EK +Q+ + E WQ + L + ++L E+ +
Sbjct: 462 EEETMREQEEKMQKQEENMWEQEEKEWQ--------------QQRLPEQKEKLWEQ--EK 505
Query: 70 LEEEQRLIWEQIHQERDQSKKVG 92
++E++ IWEQ + RDQ + G
Sbjct: 506 MQEQEEKIWEQEEKIRDQEEMWG 528
>gi|156104874 envoplakin [Homo sapiens]
Length = 2033
Score = 30.8 bits (68), Expect = 0.66
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 19/94 (20%)
Query: 9 IEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTS-----------------ILRPWSLS 51
++EK+ +EV K + E W L+ + +L+
Sbjct: 1456 VQEKIIMEEVVKLEKDPDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKAKSQ 1515
Query: 52 TRTLEREIKRLSEEGSRQLEEEQRLIWEQIHQER 85
+T+ +E+ R+ ++ R LE+E+ +WE +++ER
Sbjct: 1516 EKTIYKEVIRVQKD--RVLEDERARVWEMLNRER 1547
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 30.8 bits (68), Expect = 0.66
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 60 KRLSEEGSRQLEEEQRLIWEQIHQERDQSKKVGT 93
K+L EE ++ +EE+R E++ +E++QS+K+ T
Sbjct: 796 KKLEEEREQKRKEEERQKQEELRREKEQSEKLRT 829
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform
1 [Homo sapiens]
Length = 1722
Score = 30.8 bits (68), Expect = 0.66
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 5 ALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSE 64
+LL + A K K A Y + Q+ S + W + E +I++ E
Sbjct: 278 SLLKQQNNAAVKIQAKYKAFVAYQKYGPIIKEQIESKKRKAQEW----KEKEAKIRQKEE 333
Query: 65 EGSRQLEEEQRLIWEQIHQERDQSKK 90
E ++LEEEQR+ E+ Q+ ++ K+
Sbjct: 334 ENRKRLEEEQRIKEERKKQKEEERKR 359
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform
2 [Homo sapiens]
Length = 1336
Score = 30.8 bits (68), Expect = 0.66
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 5 ALLDIEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSE 64
+LL + A K K A Y + Q+ S + W + E +I++ E
Sbjct: 278 SLLKQQNNAAVKIQAKYKAFVAYQKYGPIIKEQIESKKRKAQEW----KEKEAKIRQKEE 333
Query: 65 EGSRQLEEEQRLIWEQIHQERDQSKK 90
E ++LEEEQR+ E+ Q+ ++ K+
Sbjct: 334 ENRKRLEEEQRIKEERKKQKEEERKR 359
>gi|4505143 cytosolic malic enzyme 1 [Homo sapiens]
Length = 572
Score = 30.4 bits (67), Expect = 0.87
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 3 LYALLDIEEKVADKEVEKAYRQKASSCYPE 32
L + D+ K+A+K V+ AY++K ++ YPE
Sbjct: 503 LNTIRDVSLKIAEKIVKDAYQEKTATVYPE 532
>gi|58530840 desmoplakin isoform I [Homo sapiens]
Length = 2871
Score = 30.4 bits (67), Expect = 0.87
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 9 IEEKVADKEVEKAYRQKASSCYPELFHWQLNSSTSILRPWSLSTRTLEREIKRLSEEGSR 68
+E++ ++ + QKA C E WQ S ++ +ER L EEG+R
Sbjct: 1128 VEDRFDQQKNDYDQLQKARQCEKENLGWQKLESEKAIKEKEYE---IERLRVLLQEEGTR 1184
Query: 69 QLEEEQRLIWEQIHQERDQSKKVGTAVVEFATAKAA--ELAVQNE 111
+ E E L + H + S E K E+++Q E
Sbjct: 1185 KREYENELAKVRNHYNEEMSNLRNKYETEINITKTTIKEISMQKE 1229
Score = 27.7 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 55 LEREIKRLSEEGSRQLEEEQRLIWEQIHQERDQSKK 90
L+ EIKR+ E R+LE+ R Q+ ER + ++
Sbjct: 1902 LQAEIKRIEERCRRKLEDSTRETQSQLETERSRYQR 1937
>gi|24308179 CTTNBP2 N-terminal like [Homo sapiens]
Length = 639
Score = 30.4 bits (67), Expect = 0.87
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 52 TRTLEREIKRLSEEGS------RQLEEEQRLIWEQIHQERDQSKKVGTAVV---EFATAK 102
T LE+E +RL+++ ++ E+EQ+ + Q+ +ER + K++ + +V + AT K
Sbjct: 133 TYMLEKERERLTQQLEFEKSQVKKFEKEQKKLSSQLEEERSRHKQLSSMLVLECKKATNK 192
Query: 103 AAE 105
AAE
Sbjct: 193 AAE 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,589,304
Number of Sequences: 37866
Number of extensions: 251598
Number of successful extensions: 1383
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1234
Number of HSP's gapped (non-prelim): 212
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.