Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DNAJB4 Sequence: fasta or formatted (337aa) NCBI GI: 6631085
Description:

DnaJ (Hsp40) homolog, subfamily B, member 4

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         16           2
 C cysteine            1.2          4           1
 D aspartate           7.4         25           1
 E glutamate           7.7         26           2
 F phenylalanine       5.9         20           2
 G glycine            10.4         35           3
 H histidine           1.8          6           1
 I isoleucine          8.0         27           2
 K lysine              9.2         31           2
 L leucine             5.0         17           2
 M methionine          2.1          7           1
 N asparagine          3.3         11           1
 P proline             6.5         22           2
 Q glutamine           1.8          6           1
 R arginine            7.1         24           3
 S serine              7.4         25           4
 T threonine           3.6         12           1
 V valine              3.3         11           1
 W tryptophan          0.3          1           1
 Y tyrosine            3.3         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DnaJ (Hsp40) homolog, subfamily B, member 4 
DNAJB1                0.667   DnaJ (Hsp40) homolog, subfamily B, member 1 
DNAJB5                0.661   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform...
DNAJB5                0.661   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform...
DNAJB5                0.661   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform ...
DNAJB13               0.414   testis spermatogenesis apoptosis-related protein 6 [...
DNAJA2                0.243   DnaJ subfamily A member 2 
DNAJA1                0.238   DnaJ (Hsp40) homolog, subfamily A, member 1 
DNAJA4                0.223   DnaJ (Hsp40) homolog, subfamily A, member 4 isoform...
DNAJA4                0.223   DnaJ (Hsp40) homolog, subfamily A, member 4 isoform...
DNAJB11               0.210   DnaJ (Hsp40) homolog, subfamily B, member 11 precurso...
DNAJB6                0.156   DnaJ (Hsp40) homolog, subfamily B, member 6 isoform ...
DNAJB6                0.156   DnaJ (Hsp40) homolog, subfamily B, member 6 isoform b...
DNAJA4                0.153   DnaJ (Hsp40) homolog, subfamily A, member 4 isoform...
DNAJB3                0.133   DnaJ (Hsp40) homolog, subfamily B, member 3 
DNAJB2                0.127   DnaJ (Hsp40) homolog, subfamily B, member 2 isoform ...
DNAJB2                0.127   DnaJ (Hsp40) homolog, subfamily B, member 2 isoform ...
DNAJB7                0.127   DnaJ (Hsp40) homolog, subfamily B, member 7 
DNAJB12               0.127   DnaJ (Hsp40) homolog, subfamily B, member 12 
DNAJB12               0.127   DnaJ (Hsp40) homolog, subfamily B, member 12 
DNAJB8                0.118   DnaJ homolog, subfamily B, member 8 
DNAJB9                0.115   DnaJ (Hsp40) homolog, subfamily B, member 9 
DNAJB14               0.103   DnaJ (Hsp40) homolog, subfamily B, member 14 isoform...
DNAJC18               0.099   DnaJ (Hsp40) homolog, subfamily C, member 18 
DNAJC7                0.097   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
DNAJC7                0.097   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
DNAJA3                0.097   DnaJ (Hsp40) homolog, subfamily A, member 3 isoform...
DNAJA3                0.097   DnaJ (Hsp40) homolog, subfamily A, member 3 isoform...
DNAJC5                0.090   DnaJ (Hsp40) homolog, subfamily C, member 5 
DNAJC16               0.090   DnaJ (Hsp40) homolog, subfamily C, member 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press