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Search of human proteins with 116256358
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116256358 secretory carrier membrane protein 1 [Homo
sapiens]
(338 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116256358 secretory carrier membrane protein 1 [Homo sapiens] 701 0.0
gi|5730031 secretory carrier membrane protein 2 [Homo sapiens] 371 e-103
gi|16445419 secretory carrier membrane protein 3 isoform 1 [Homo... 354 5e-98
gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo... 338 4e-93
gi|20373183 secretory carrier membrane protein 5 [Homo sapiens] 231 9e-61
gi|17738287 secretory carrier membrane protein 4 [Homo sapiens] 214 7e-56
gi|30795204 histone deacetylase 9 isoform 5 [Homo sapiens] 35 0.073
gi|217330574 EH domain binding protein 1 isoform 3 [Homo sapiens] 35 0.096
gi|217330572 EH domain binding protein 1 isoform 3 [Homo sapiens] 35 0.096
gi|217330570 EH domain binding protein 1 isoform 2 [Homo sapiens] 35 0.096
gi|217330568 EH domain binding protein 1 isoform 1 [Homo sapiens] 35 0.096
gi|4507789 ubiquitin-conjugating enzyme E2L 3 isoform 1 [Homo sa... 35 0.096
gi|37537552 sodium-dependent organic anion transporter [Homo sap... 34 0.16
gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens] 34 0.16
gi|93141029 paralemmin isoform 2 [Homo sapiens] 34 0.21
gi|93141031 paralemmin isoform 1 [Homo sapiens] 34 0.21
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa... 33 0.28
gi|24497614 klotho [Homo sapiens] 33 0.36
gi|33286444 mastermind-like 2 [Homo sapiens] 32 0.62
gi|55750053 atrophin-1 [Homo sapiens] 32 0.62
gi|55750041 atrophin-1 [Homo sapiens] 32 0.62
gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Hom... 32 0.62
gi|171543895 ataxin 2 [Homo sapiens] 32 0.81
gi|110556646 transmembrane protein 8B isoform a [Homo sapiens] 32 1.1
gi|110556642 transmembrane protein 8B isoform a [Homo sapiens] 32 1.1
gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens] 31 1.4
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 31 1.4
gi|27552764 transmembrane protein 8B isoform b [Homo sapiens] 31 1.8
gi|22027646 angiomotin like 1 [Homo sapiens] 31 1.8
gi|110431370 espin [Homo sapiens] 31 1.8
>gi|116256358 secretory carrier membrane protein 1 [Homo sapiens]
Length = 338
Score = 701 bits (1808), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGGVKMPNVPNTQ 60
MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGGVKMPNVPNTQ
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGGVKMPNVPNTQ 60
Query: 61 PAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNNW 120
PAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNNW
Sbjct: 61 PAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNNW 120
Query: 121 PPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSAR 180
PPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSAR
Sbjct: 121 PPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSAR 180
Query: 181 AVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFH 240
AVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFH
Sbjct: 181 AVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFH 240
Query: 241 NWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQ 300
NWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQ
Sbjct: 241 NWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQ 300
Query: 301 QEFATGVMSNKTVQTAAANAASTAASSAAQNAFKGNQI 338
QEFATGVMSNKTVQTAAANAASTAASSAAQNAFKGNQI
Sbjct: 301 QEFATGVMSNKTVQTAAANAASTAASSAAQNAFKGNQI 338
>gi|5730031 secretory carrier membrane protein 2 [Homo sapiens]
Length = 329
Score = 371 bits (953), Expect = e-103
Identities = 182/340 (53%), Positives = 250/340 (73%), Gaps = 15/340 (4%)
Query: 1 MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGGVKMPNVP-NT 59
MS FD+NPFADP NPF+DPSVTQ+T GL E+NPFS++ V + +P ++
Sbjct: 1 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATT--VPVTQLPGSS 58
Query: 60 QPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNL--SQHGRK 117
QPA+++P+ E T A A AQA LL++QEEL+RKAAEL+R+ERE+QN + H R+
Sbjct: 59 QPAVLQPSVEPTQPTPQAVVSA-AQAGLLRQQEELDRKAAELERKERELQNTVANLHVRQ 117
Query: 118 NNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVD 177
NNWPPLPS PV PCFYQDFS +IP ++Q+ K++YYLWM H+VTLFLN+ CLAWF +
Sbjct: 118 NNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFSGN 177
Query: 178 SARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAA 237
S++ VDFGLSILWFL+FTPC+F+CWYRP+Y AFRSD+SF FFVFFFV+ CQ ++++Q
Sbjct: 178 SSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLV 237
Query: 238 GFHNWGNCGWISSLTGL-NQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASF 296
G G+ GWI++L+ L N ++ + ++M+++A FT AV+S+ + ++VH LYR TGASF
Sbjct: 238 GIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGASF 297
Query: 297 EKAQQEFATGVMSNKTVQTAAANAASTAASSAAQNAFKGN 336
++AQ+EF+ G+ S++T AASSAAQ AF+GN
Sbjct: 298 QQAQEEFSQGIFSSRTFH--------RAASSAAQGAFQGN 329
>gi|16445419 secretory carrier membrane protein 3 isoform 1 [Homo
sapiens]
Length = 347
Score = 354 bits (909), Expect = 5e-98
Identities = 189/342 (55%), Positives = 233/342 (68%), Gaps = 19/342 (5%)
Query: 7 NPFADP-DLNNPFKDPSVTQVTRNVPPG-LDEYNPFSDSRTPP------PGGVKMPNVPN 58
NPFA+P +L+NPF+DP+V Q + LD YNPF PP P + P+ P+
Sbjct: 9 NPFAEPSELDNPFQDPAVIQHRPSRQYATLDVYNPFETREPPPAYEPPAPAPLPPPSAPS 68
Query: 59 TQPAI-MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHG 115
QP+ + PTE + +Y+ A A A AELLK+QEEL RKA ELDRRERE+Q+ + G
Sbjct: 69 LQPSRKLSPTEPKNYGSYSTQASA-AAATAELLKKQEELNRKAEELDRRERELQHAALGG 127
Query: 116 ---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLA 172
R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM + L LN CLA
Sbjct: 128 TATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLA 187
Query: 173 WFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVH 232
FCV++ FGLSILW LLFTPCSFVCWYRP+Y AFRSDSSF FFVFFF++ Q +
Sbjct: 188 SFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVLF 247
Query: 233 VLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTT 292
VLQA G WG GWIS+L N V ++M+++A LFT AV+ +VM K++H LYR T
Sbjct: 248 VLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYRRT 307
Query: 293 GASFEKAQQEFATGVMSNKTVQTAAANAASTAASSAAQNAFK 334
GASF+KAQQEFA GV SN V+TAAAN AA+ AA+NAF+
Sbjct: 308 GASFQKAQQEFAAGVFSNPAVRTAAAN----AAAGAAENAFR 345
>gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo
sapiens]
Length = 321
Score = 338 bits (867), Expect = 4e-93
Identities = 181/335 (54%), Positives = 223/335 (66%), Gaps = 31/335 (9%)
Query: 7 NPFADP-DLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGGVKMPNVPNTQPAI-M 64
NPFA+P +L+NPF+ P Y P P P + P+ P+ QP+ +
Sbjct: 9 NPFAEPSELDNPFQPPPA-------------YEP------PAPAPLPPPSAPSLQPSRKL 49
Query: 65 KPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHG---RKNN 119
PTE + +Y+ A A A AELLK+QEEL RKA ELDRRERE+Q+ + G R+NN
Sbjct: 50 SPTEPKNYGSYSTQASA-AAATAELLKKQEELNRKAEELDRRERELQHAALGGTATRQNN 108
Query: 120 WPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSA 179
WPPLPS PV PCF+QD S++IP EFQKTV MYYLWM + L LN CLA FCV++
Sbjct: 109 WPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLASFCVETN 168
Query: 180 RAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGF 239
FGLSILW LLFTPCSFVCWYRP+Y AFRSDSSF FFVFFF++ Q + VLQA G
Sbjct: 169 NGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVLFVLQAIGI 228
Query: 240 HNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKA 299
WG GWIS+L N V ++M+++A LFT AV+ +VM K++H LYR TGASF+KA
Sbjct: 229 PGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYRRTGASFQKA 288
Query: 300 QQEFATGVMSNKTVQTAAANAASTAASSAAQNAFK 334
QQEFA GV SN V+TAAAN AA+ AA+NAF+
Sbjct: 289 QQEFAAGVFSNPAVRTAAAN----AAAGAAENAFR 319
>gi|20373183 secretory carrier membrane protein 5 [Homo sapiens]
Length = 235
Score = 231 bits (588), Expect = 9e-61
Identities = 103/211 (48%), Positives = 137/211 (64%), Gaps = 1/211 (0%)
Query: 118 NNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVD 177
NN+PPLP P+ PCFYQDF DIP + K +YYLWM ++VTL +N+ GCLAW +
Sbjct: 6 NNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLAWL-IG 64
Query: 178 SARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAA 237
A +FGL+ LW +LFTPCS+VCW+RP+Y AF++DSSF F FFF ++ Q + ++QA
Sbjct: 65 GGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAV 124
Query: 238 GFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFE 297
G WG CGWI++++ NI ++M+I +FT AV S + VH YR +G SF
Sbjct: 125 GIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFS 184
Query: 298 KAQQEFATGVMSNKTVQTAAANAASTAASSA 328
KAQ+E+ TG N VQ AA NAA AA A
Sbjct: 185 KAQEEWTTGAWKNPHVQQAAQNAAMGAAQGA 215
>gi|17738287 secretory carrier membrane protein 4 [Homo sapiens]
Length = 229
Score = 214 bits (546), Expect = 7e-56
Identities = 96/204 (47%), Positives = 134/204 (65%), Gaps = 1/204 (0%)
Query: 116 RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFC 175
++NN+PPLP PV PCFYQ+FS +IPVE Q VK +Y LWMF+ TL +N+ CLAW+
Sbjct: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWW- 62
Query: 176 VDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQ 235
+ +FGL+ +W LLFTPC +VCW+RP+Y AFR+DSSF F FFF++ QF + V+Q
Sbjct: 63 IGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTVIQ 122
Query: 236 AAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGAS 295
A GF WG CGW+S++ + ++M++ A +F+ SA + + KVH +YR G S
Sbjct: 123 AIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAGGS 182
Query: 296 FEKAQQEFATGVMSNKTVQTAAAN 319
F+KAQ E+ TG N + A N
Sbjct: 183 FQKAQTEWNTGTWRNPPSREAQYN 206
>gi|30795204 histone deacetylase 9 isoform 5 [Homo sapiens]
Length = 1069
Score = 35.4 bits (80), Expect = 0.073
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 67 TEEHPAYTQIAKEHALAQAELL--KRQEELERKAAELDRREREMQNLSQHGRKNNWPPL 123
T +H A Q EH Q ELL K+Q+EL K +L+++ +E Q + +H R+ PPL
Sbjct: 76 TRQHQAQLQ---EHIKLQQELLAIKQQQELLEKEQKLEQQRQE-QEVERHRREQQLPPL 130
>gi|217330574 EH domain binding protein 1 isoform 3 [Homo sapiens]
Length = 1160
Score = 35.0 bits (79), Expect = 0.096
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 1 MSDFDSNPFADPDLN--NPFKDP-SVTQVTRNVPPGLDE-------YNPFSDSRTP 46
++ +SNPF DPD NPF DP S +T P E YNPF + +TP
Sbjct: 227 LATVNSNPFDDPDAAELNPFGDPDSEEPITETASPRKTEDSFYNNSYNPFKEVQTP 282
>gi|217330572 EH domain binding protein 1 isoform 3 [Homo sapiens]
Length = 1160
Score = 35.0 bits (79), Expect = 0.096
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 1 MSDFDSNPFADPDLN--NPFKDP-SVTQVTRNVPPGLDE-------YNPFSDSRTP 46
++ +SNPF DPD NPF DP S +T P E YNPF + +TP
Sbjct: 227 LATVNSNPFDDPDAAELNPFGDPDSEEPITETASPRKTEDSFYNNSYNPFKEVQTP 282
>gi|217330570 EH domain binding protein 1 isoform 2 [Homo sapiens]
Length = 1196
Score = 35.0 bits (79), Expect = 0.096
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 1 MSDFDSNPFADPDLN--NPFKDP-SVTQVTRNVPPGLDE-------YNPFSDSRTP 46
++ +SNPF DPD NPF DP S +T P E YNPF + +TP
Sbjct: 227 LATVNSNPFDDPDAAELNPFGDPDSEEPITETASPRKTEDSFYNNSYNPFKEVQTP 282
>gi|217330568 EH domain binding protein 1 isoform 1 [Homo sapiens]
Length = 1231
Score = 35.0 bits (79), Expect = 0.096
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 1 MSDFDSNPFADPDLN--NPFKDP-SVTQVTRNVPPGLDE-------YNPFSDSRTP 46
++ +SNPF DPD NPF DP S +T P E YNPF + +TP
Sbjct: 262 LATVNSNPFDDPDAAELNPFGDPDSEEPITETASPRKTEDSFYNNSYNPFKEVQTP 317
>gi|4507789 ubiquitin-conjugating enzyme E2L 3 isoform 1 [Homo
sapiens]
Length = 154
Score = 35.0 bits (79), Expect = 0.096
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 17 PFKDPSVTQVTRNVPPGLDEYN----PFSDSRTPPPGGVKMPNVPNTQPAIMKPTEEHPA 72
PFK P +T T+ P +DE P + P + + + P EHP
Sbjct: 62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 121
Query: 73 YTQIAKEHALAQAELLKRQEELERKAAE 100
+A+E++ + + K EE +K E
Sbjct: 122 RADLAEEYSKDRKKFCKNAEEFTKKYGE 149
>gi|37537552 sodium-dependent organic anion transporter [Homo
sapiens]
Length = 377
Score = 34.3 bits (77), Expect = 0.16
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 208 GAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIII 267
G++ SD + F F I +L +W C IS TG QNI + I M+ +
Sbjct: 218 GSWNSDITLLTISFIFPLIGHVTGFLLALFTHQSWQRCRTISLETGA-QNIQMCITMLQL 276
Query: 268 AALFTASAVISLVMFKKVHGLYR 290
+ FTA ++ ++ F +GL++
Sbjct: 277 S--FTAEHLVQMLSFPLAYGLFQ 297
>gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]
Length = 1080
Score = 34.3 bits (77), Expect = 0.16
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 77 AKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNNW 120
A + L QAE L+ Q E E++A RER Q QH + W
Sbjct: 741 ASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQW 784
>gi|93141029 paralemmin isoform 2 [Homo sapiens]
Length = 343
Score = 33.9 bits (76), Expect = 0.21
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 72 AYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNNW 120
A T +E A AE KRQ E+E K +L+ R++Q+L + W
Sbjct: 6 AETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERW 54
>gi|93141031 paralemmin isoform 1 [Homo sapiens]
Length = 387
Score = 33.9 bits (76), Expect = 0.21
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 72 AYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNNW 120
A T +E A AE KRQ E+E K +L+ R++Q+L + W
Sbjct: 6 AETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERW 54
>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
sapiens]
Length = 685
Score = 33.5 bits (75), Expect = 0.28
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 50 GVKMPNVPNTQPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREM 108
G + NVP + P ++ P + + A QA L +++EEL RKA E RR+ E+
Sbjct: 13 GQGVNNVPKRYSLAVGPPKKDPKVKGV--QSAAVQAFLKRKEEELRRKALEEKRRKEEL 69
>gi|24497614 klotho [Homo sapiens]
Length = 1012
Score = 33.1 bits (74), Expect = 0.36
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 117 KNNWPPLPSNFPVGPCFYQDFS-------VDIPVEFQKTVKLMYYLWMFHAVTLFLNIFG 169
KN +PPLP N P+ F DF+ + + + L YLW H + + G
Sbjct: 503 KNGFPPLPENQPLEGTFPCDFAWGVVDNYIQVDTTLSQFTDLNVYLWDVHHSKRLIKVDG 562
Query: 170 CLA----WFCVDSA 179
+ +CVD A
Sbjct: 563 VVTKKRKSYCVDFA 576
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 32.3 bits (72), Expect = 0.62
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 5/121 (4%)
Query: 32 PGLDEYNPFSDSRTPPPGG--VKMPN--VPNTQPAIMKPTEEHPAYTQIAKEHALAQAEL 87
PGL + S PP G M N + + P P + T AL +
Sbjct: 370 PGLTQGPSGSPQLRPPSAGPAFSMANSALSTSSPIPSVPQSQAQPQTGSGASRALPSWQE 429
Query: 88 LKRQEELERKAAELDRREREMQNLSQHGRKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQK 147
+ ++L++ AA + R Q+ QH + NW LPS+ P + + P Q+
Sbjct: 430 VSHAQQLKQIAANRQQHARMQQHQQQH-QPTNWSALPSSAGPSPGPFGQEKIPSPSFGQQ 488
Query: 148 T 148
T
Sbjct: 489 T 489
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 32.3 bits (72), Expect = 0.62
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 22/137 (16%)
Query: 2 SDFDSNPF----ADPDLNNPFKDPSVTQVTRNVP----PGLDEYNPFSDSRTPPPGGVKM 53
S ++PF A P + F P+ V+ P P L +S PPP ++
Sbjct: 392 SSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRL 451
Query: 54 PNVPNTQPAIMKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNL 111
N P P+ + A+ ++ H Q + ++Q++ ++++ Q
Sbjct: 452 LANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQ----------QQQQQQQQ 501
Query: 112 SQHGRKNNWPPLPSNFP 128
HG N+ PP P FP
Sbjct: 502 QHHG--NSGPPPPGAFP 516
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 32.3 bits (72), Expect = 0.62
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 22/137 (16%)
Query: 2 SDFDSNPF----ADPDLNNPFKDPSVTQVTRNVP----PGLDEYNPFSDSRTPPPGGVKM 53
S ++PF A P + F P+ V+ P P L +S PPP ++
Sbjct: 392 SSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRL 451
Query: 54 PNVPNTQPAIMKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNL 111
N P P+ + A+ ++ H Q + ++Q++ ++++ Q
Sbjct: 452 LANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQ----------QQQQQQQQ 501
Query: 112 SQHGRKNNWPPLPSNFP 128
HG N+ PP P FP
Sbjct: 502 QHHG--NSGPPPPGAFP 516
>gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Homo
sapiens]
Length = 1551
Score = 32.3 bits (72), Expect = 0.62
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 46 PPPGGVKMPNVPNTQPAIMKPTEEHPAYTQIAKEHALAQAELLKRQ--EELERKAAELDR 103
PP GG + + A+ + E+ ++ KE AL Q + R+ E ER AEL +
Sbjct: 599 PPEGGPQEAQLRKEVAALREQLEQAHSHRPSGKEEALCQLQEENRRLSREQERLEAELAQ 658
Query: 104 REREMQNLSQHGR--KNNW 120
+ Q L R ++NW
Sbjct: 659 EQESKQRLEGERRETESNW 677
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 32.0 bits (71), Expect = 0.81
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 50 GVKMPNVPNTQPAIMKPTEEH--PAYTQIAKEHALAQAELLKRQEELERKAAELDRRERE 107
G PN P+ P+I+ TE P T + + + K +E ++ AAE R+
Sbjct: 855 GSSKPNSPSISPSILSNTEHKRGPEVTSQGVQTSSPACKQEKDDKEEKKDAAEQVRKSTL 914
Query: 108 MQNLSQHGRKNNWPPLPSNFPVGP 131
N + ++ P PS P P
Sbjct: 915 NPNAKEFNPRSFSQPKPSTTPTSP 938
>gi|110556646 transmembrane protein 8B isoform a [Homo sapiens]
Length = 472
Score = 31.6 bits (70), Expect = 1.1
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 169 GCLAWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRS----DSSFRFFVFFF- 223
G W C DSA A+ +G +L LL S + + P+ A RS +++ F FF
Sbjct: 214 GWRGWGCTDSADALTYGFQLLSTLLLC-LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFS 272
Query: 224 -----------VYICQFAVHVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFT 272
V C VLQ F W++ + V ++ ++ A+
Sbjct: 273 TFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVVKQVLYLLGAM-- 330
Query: 273 ASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMS 309
++S+ + HGL+ G S FA G+++
Sbjct: 331 ---LLSMALQLDRHGLWNLLGPSL------FALGILA 358
>gi|110556642 transmembrane protein 8B isoform a [Homo sapiens]
Length = 472
Score = 31.6 bits (70), Expect = 1.1
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 169 GCLAWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRS----DSSFRFFVFFF- 223
G W C DSA A+ +G +L LL S + + P+ A RS +++ F FF
Sbjct: 214 GWRGWGCTDSADALTYGFQLLSTLLLC-LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFS 272
Query: 224 -----------VYICQFAVHVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFT 272
V C VLQ F W++ + V ++ ++ A+
Sbjct: 273 TFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVVKQVLYLLGAM-- 330
Query: 273 ASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMS 309
++S+ + HGL+ G S FA G+++
Sbjct: 331 ---LLSMALQLDRHGLWNLLGPSL------FALGILA 358
>gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens]
Length = 858
Score = 31.2 bits (69), Expect = 1.4
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 30 VPPGLDEYNPFSDSRTPPPGGVKMPNVPNTQPAI--------MKPTEEHPAYTQIAKE-H 80
+PP ++ P S+ P V P V QP + + PTE + + +
Sbjct: 334 MPPAPEDLKPQQASQAPTAPSVIPPAVERVQPVMAPDVPATPVAPTESQTVLDALQQRLN 393
Query: 81 ALAQAELLKRQEELERKAAELDRREREMQN---LSQHGRKNNWP--PLPSNFPVGP 131
+A + R ERKA +R ++ Q+ + GRK N+ P+P FP P
Sbjct: 394 KYREAGIQARSGGDERKARMHERIAKQYQDAIRAHRAGRKVNFAELPVPPGFPPIP 449
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 31.2 bits (69), Expect = 1.4
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 8 PFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPP-GGVKMPNVPNTQPAIMKP 66
P A P L P P V + + GL P +S PPP GG+ +P +P T PA P
Sbjct: 217 PPAPPSL--PAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGP 274
>gi|27552764 transmembrane protein 8B isoform b [Homo sapiens]
Length = 338
Score = 30.8 bits (68), Expect = 1.8
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 169 GCLAWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRS----DSSFRFFVFFFV 224
G W C DSA A+ +G +L LL S + + P+ A RS +++ F FF
Sbjct: 214 GWRGWGCTDSADALTYGFQLLSTLLLC-LSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFS 272
Query: 225 YICQFAVHVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVI 277
+C V +L W W++ + +G+ + + L T +AV+
Sbjct: 273 TVCG-GVCILSLGACAWW----WVTVCISTTFSEGLGMSVPSLCLLQTETAVL 320
>gi|22027646 angiomotin like 1 [Homo sapiens]
Length = 956
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 62 AIMKPTEEHPAYTQIAKEH-ALAQAELLKRQEELERKAAELDRREREMQNLSQ 113
A+ +E+H + +I + + AQA ++K +EEL K A +++ E+ Q L+Q
Sbjct: 566 AVRTASEDHRRHIEILDQALSNAQARVIKLEEELREKQAYVEKVEKLQQALTQ 618
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 30.8 bits (68), Expect = 1.8
Identities = 24/99 (24%), Positives = 36/99 (36%)
Query: 8 PFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGGVKMPNVPNTQPAIMKPT 67
P PD P P+++ V PP + S P P P V A++
Sbjct: 684 PAFQPDSPLPSVSPALSPVRSPTPPAAGFQPLLNGSLVPVPPTTPAPGVQLDVEALIPTH 743
Query: 68 EEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRRER 106
+E K + + LK QEE E++ E + R
Sbjct: 744 DEQGRPIPEWKRQVMVRKMQLKMQEEEEQRRKEEEEEAR 782
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,077,655
Number of Sequences: 37866
Number of extensions: 609453
Number of successful extensions: 4489
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 4150
Number of HSP's gapped (non-prelim): 393
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.