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Search of human proteins with 116235476
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116235476 WD repeat domain 73 [Homo sapiens]
(378 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116235476 WD repeat domain 73 [Homo sapiens] 789 0.0
gi|207029439 retinoblastoma binding protein 4 isoform c [Homo sa... 51 2e-06
gi|207029415 retinoblastoma binding protein 4 isoform b [Homo sa... 51 2e-06
gi|5032027 retinoblastoma binding protein 4 isoform a [Homo sapi... 51 2e-06
gi|4506439 retinoblastoma binding protein 7 [Homo sapiens] 44 2e-04
gi|157739942 gemin 5 [Homo sapiens] 39 0.010
gi|109627650 coronin 6 [Homo sapiens] 36 0.050
gi|55743149 WD repeat domain 17 isoform 2 [Homo sapiens] 34 0.19
gi|31317311 WD repeat domain 17 isoform 1 [Homo sapiens] 34 0.19
gi|4505731 peroxisomal biogenesis factor 7 [Homo sapiens] 33 0.32
gi|14150171 THO complex 3 [Homo sapiens] 33 0.42
gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens] 33 0.55
gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens] 33 0.55
gi|116256336 SEC31 homolog A isoform 4 [Homo sapiens] 33 0.55
gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens] 33 0.55
gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens] 33 0.55
gi|182765442 homeobox A10 isoform a [Homo sapiens] 32 0.72
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 32 0.72
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 32 0.72
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 32 0.72
gi|58331266 WD repeat domain 59 [Homo sapiens] 32 0.94
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens] 31 1.6
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 31 1.6
gi|7656991 coronin, actin binding protein, 1C isoform 1 [Homo sa... 31 2.1
gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens] 30 2.7
gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens] 30 2.7
gi|13699824 kinesin family member 11 [Homo sapiens] 30 2.7
gi|51242945 striatin, calmodulin binding protein [Homo sapiens] 30 2.7
gi|4504421 hepatic leukemia factor [Homo sapiens] 30 2.7
gi|41349446 stromal interaction molecule 2 [Homo sapiens] 30 2.7
>gi|116235476 WD repeat domain 73 [Homo sapiens]
Length = 378
Score = 789 bits (2038), Expect = 0.0
Identities = 378/378 (100%), Positives = 378/378 (100%)
Query: 1 MDPGDDWLVESLRLYQDFYAFDLSGATRVLEWIDDKGVFVAGYESLKKNEILHLKLPLRL 60
MDPGDDWLVESLRLYQDFYAFDLSGATRVLEWIDDKGVFVAGYESLKKNEILHLKLPLRL
Sbjct: 1 MDPGDDWLVESLRLYQDFYAFDLSGATRVLEWIDDKGVFVAGYESLKKNEILHLKLPLRL 60
Query: 61 SVKENKGLFPERDFKVRHGGFSDRSIFDLKHVPHTRLLVTSGLPGCYLQVWQVAEDSDVI 120
SVKENKGLFPERDFKVRHGGFSDRSIFDLKHVPHTRLLVTSGLPGCYLQVWQVAEDSDVI
Sbjct: 61 SVKENKGLFPERDFKVRHGGFSDRSIFDLKHVPHTRLLVTSGLPGCYLQVWQVAEDSDVI 120
Query: 121 KAVSTIAVHEKEESLWPRVAVFSTLAPGVLHGARLRSLQVVDLESRKTTYTSDVSDSEEL 180
KAVSTIAVHEKEESLWPRVAVFSTLAPGVLHGARLRSLQVVDLESRKTTYTSDVSDSEEL
Sbjct: 121 KAVSTIAVHEKEESLWPRVAVFSTLAPGVLHGARLRSLQVVDLESRKTTYTSDVSDSEEL 180
Query: 181 SSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPS 240
SSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPS
Sbjct: 181 SSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPS 240
Query: 241 IASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTV 300
IASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTV
Sbjct: 241 IASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTV 300
Query: 301 QVYDATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSA 360
QVYDATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSA
Sbjct: 301 QVYDATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSA 360
Query: 361 TNDASLHVWDWVDLCAPR 378
TNDASLHVWDWVDLCAPR
Sbjct: 361 TNDASLHVWDWVDLCAPR 378
>gi|207029439 retinoblastoma binding protein 4 isoform c [Homo
sapiens]
Length = 390
Score = 50.8 bits (120), Expect = 2e-06
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 29/218 (13%)
Query: 159 QVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPG 218
+VVD ++ T +T+ V D S +L F +L + DTR N +
Sbjct: 180 KVVDAKTIFTGHTAVVEDV----SWHLLHESLFGSVADDQKLMIWDTRS------NNTSK 229
Query: 219 PGSGGERWCAEVGSWGQGPGPS--IASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDP 276
P + AEV P +A+ +D + L D R+L + S + S
Sbjct: 230 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE------SHKD 283
Query: 277 ELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRS-QDGTRSQVEPLFTHRGHIFLDG 335
E+ +V W+P + LA SG D + V+D + +S +D E LF H GH
Sbjct: 284 EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH----- 338
Query: 336 NGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVD 373
++ +W+P P + S + D + VW +
Sbjct: 339 -----TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 371
>gi|207029415 retinoblastoma binding protein 4 isoform b [Homo
sapiens]
Length = 424
Score = 50.8 bits (120), Expect = 2e-06
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 29/218 (13%)
Query: 159 QVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPG 218
+VVD ++ T +T+ V D S +L F +L + DTR N +
Sbjct: 214 KVVDAKTIFTGHTAVVEDV----SWHLLHESLFGSVADDQKLMIWDTRS------NNTSK 263
Query: 219 PGSGGERWCAEVGSWGQGPGPS--IASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDP 276
P + AEV P +A+ +D + L D R+L + S + S
Sbjct: 264 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE------SHKD 317
Query: 277 ELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRS-QDGTRSQVEPLFTHRGHIFLDG 335
E+ +V W+P + LA SG D + V+D + +S +D E LF H GH
Sbjct: 318 EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH----- 372
Query: 336 NGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVD 373
++ +W+P P + S + D + VW +
Sbjct: 373 -----TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 405
>gi|5032027 retinoblastoma binding protein 4 isoform a [Homo
sapiens]
Length = 425
Score = 50.8 bits (120), Expect = 2e-06
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 29/218 (13%)
Query: 159 QVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPG 218
+VVD ++ T +T+ V D S +L F +L + DTR N +
Sbjct: 215 KVVDAKTIFTGHTAVVEDV----SWHLLHESLFGSVADDQKLMIWDTRS------NNTSK 264
Query: 219 PGSGGERWCAEVGSWGQGPGPS--IASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDP 276
P + AEV P +A+ +D + L D R+L + S + S
Sbjct: 265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE------SHKD 318
Query: 277 ELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRS-QDGTRSQVEPLFTHRGHIFLDG 335
E+ +V W+P + LA SG D + V+D + +S +D E LF H GH
Sbjct: 319 EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH----- 373
Query: 336 NGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVD 373
++ +W+P P + S + D + VW +
Sbjct: 374 -----TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406
>gi|4506439 retinoblastoma binding protein 7 [Homo sapiens]
Length = 425
Score = 43.9 bits (102), Expect = 2e-04
Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 29/218 (13%)
Query: 159 QVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPG 218
++VD ++ T +++ V D + +L F +L + DTR N +
Sbjct: 214 KIVDAKAIFTGHSAVVEDV----AWHLLHESLFGSVADDQKLMIWDTRS------NTTSK 263
Query: 219 PGSGGERWCAEVGSWGQGPGPS--IASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDP 276
P + AEV P +A+ +D + L D R+L + + + S
Sbjct: 264 PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFE------SHKD 317
Query: 277 ELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRS-QDGTRSQVEPLFTHRGHIFLDG 335
E+ +V W+P + LA SG D + V+D + +S +D E LF H GH
Sbjct: 318 EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH----- 372
Query: 336 NGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVD 373
++ +W+P P + S + D + +W +
Sbjct: 373 -----TAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 405
>gi|157739942 gemin 5 [Homo sapiens]
Length = 1508
Score = 38.5 bits (88), Expect = 0.010
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 30/114 (26%)
Query: 263 SSVQCPVSVPSP-------DPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQD 315
SS + PV++ P ++ V W+P L + +DGT QV+DA
Sbjct: 620 SSPESPVTITEPYRTLSGHTAKITSVAWSPHHDGRLVSASYDGTAQVWDAL--------- 670
Query: 316 GTRSQVEPLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVW 369
+ EPL RGH + W P P + S +D +H W
Sbjct: 671 ----REEPLCNFRGH----------RGRLLCVAWSPLDPDCIYSGADDFCVHKW 710
>gi|109627650 coronin 6 [Homo sapiens]
Length = 472
Score = 36.2 bits (82), Expect = 0.050
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 278 LLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNG 337
+L + W P N +A + D T+ V+ + R+ EP+ T GH
Sbjct: 84 VLDIDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNI------TEPIITLEGH------- 130
Query: 338 MDPAPLVTTHTWHPCRPRTLLSATNDASLHVWD 370
+ V +WHP LLSA D + +W+
Sbjct: 131 ---SKRVGILSWHPTARNVLLSAGGDNVIIIWN 160
>gi|55743149 WD repeat domain 17 isoform 2 [Homo sapiens]
Length = 1298
Score = 34.3 bits (77), Expect = 0.19
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 277 ELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVEPLF--THRGHIFLD 334
++ V W+P + L DGTV+++D T +G + V L T ++ +
Sbjct: 544 KVFHVKWSPLREGILCSGSDDGTVRIWDYTQDACINILNGHTAPVRGLMWNTEIPYLLIS 603
Query: 335 GNG------------------MDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDLCA 376
G+ D V T HP RP T+ S + D+++ +W L
Sbjct: 604 GSWDYTIKVWDTREGTCVDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLTALVT 663
Query: 377 P 377
P
Sbjct: 664 P 664
Score = 30.4 bits (67), Expect = 2.7
Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 45/152 (29%)
Query: 232 SWGQGPGPSIASLGSDGRLCLLDPRD------LCHPVSSVQCPVSVPSPDPELLRVTWAP 285
+W IA+ SDG C++ D HP + C W+
Sbjct: 463 AWSHKDSKRIATCSSDG-FCIIRTIDGKVLHKYKHPAAVFGCD--------------WSQ 507
Query: 286 GLKNCLAISGFDGTVQVYD-ATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPLV 344
K+ +A D V+VY ATS D +PL GH V
Sbjct: 508 NNKDMIATGCEDTNVRVYYVATSSD------------QPLKVFSGH----------TAKV 545
Query: 345 TTHTWHPCRPRTLLSATNDASLHVWDWV-DLC 375
W P R L S ++D ++ +WD+ D C
Sbjct: 546 FHVKWSPLREGILCSGSDDGTVRIWDYTQDAC 577
>gi|31317311 WD repeat domain 17 isoform 1 [Homo sapiens]
Length = 1322
Score = 34.3 bits (77), Expect = 0.19
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 277 ELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVEPLF--THRGHIFLD 334
++ V W+P + L DGTV+++D T +G + V L T ++ +
Sbjct: 568 KVFHVKWSPLREGILCSGSDDGTVRIWDYTQDACINILNGHTAPVRGLMWNTEIPYLLIS 627
Query: 335 GNG------------------MDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDLCA 376
G+ D V T HP RP T+ S + D+++ +W L
Sbjct: 628 GSWDYTIKVWDTREGTCVDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLTALVT 687
Query: 377 P 377
P
Sbjct: 688 P 688
Score = 30.4 bits (67), Expect = 2.7
Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 45/152 (29%)
Query: 232 SWGQGPGPSIASLGSDGRLCLLDPRD------LCHPVSSVQCPVSVPSPDPELLRVTWAP 285
+W IA+ SDG C++ D HP + C W+
Sbjct: 487 AWSHKDSKRIATCSSDG-FCIIRTIDGKVLHKYKHPAAVFGCD--------------WSQ 531
Query: 286 GLKNCLAISGFDGTVQVYD-ATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPLV 344
K+ +A D V+VY ATS D +PL GH V
Sbjct: 532 NNKDMIATGCEDTNVRVYYVATSSD------------QPLKVFSGH----------TAKV 569
Query: 345 TTHTWHPCRPRTLLSATNDASLHVWDWV-DLC 375
W P R L S ++D ++ +WD+ D C
Sbjct: 570 FHVKWSPLREGILCSGSDDGTVRIWDYTQDAC 601
>gi|4505731 peroxisomal biogenesis factor 7 [Homo sapiens]
Length = 323
Score = 33.5 bits (75), Expect = 0.32
Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 30/140 (21%)
Query: 232 SWGQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCL 291
+W + + + DG L L D P+ + E+ V W+ L
Sbjct: 74 TWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYK------EHAQEVYSVDWSQTRGEQL 127
Query: 292 AISG-FDGTVQVYDATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPLVTTHTWH 350
+SG +D TV+++D T + L T RGH ++ + W
Sbjct: 128 VVSGSWDQTVKLWDPTVG-------------KSLCTFRGH----------ESIIYSTIWS 164
Query: 351 PCRPRTLLSATNDASLHVWD 370
P P SA+ D +L +WD
Sbjct: 165 PHIPGCFASASGDQTLRIWD 184
>gi|14150171 THO complex 3 [Homo sapiens]
Length = 351
Score = 33.1 bits (74), Expect = 0.42
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 305 ATSWDGTRSQDGTRSQVEPLFT-HRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATND 363
A S DG R G+ + +F + + + N V WHP P ++A+ D
Sbjct: 62 AWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASGD 121
Query: 364 ASLHVWD 370
++ +WD
Sbjct: 122 KTIRIWD 128
>gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
Length = 1205
Score = 32.7 bits (73), Expect = 0.55
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 232 SWGQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCL 291
+W + S G D ++ LC ++ + +P+ + W P L
Sbjct: 267 AWSMADPELLLSCGKDAKI-------LCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVL 319
Query: 292 AISGFDGTVQVYD--ATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPL 343
+ + FDG + VY S DG R + QV+ L + G++ G G PL
Sbjct: 320 SAASFDGRISVYSIMGGSTDGLR-----QKQVDKLSSSFGNLDPFGTGQPLPPL 368
>gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 32.7 bits (73), Expect = 0.55
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 232 SWGQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCL 291
+W + S G D ++ LC ++ + +P+ + W P L
Sbjct: 267 AWSMADPELLLSCGKDAKI-------LCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVL 319
Query: 292 AISGFDGTVQVYD--ATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPL 343
+ + FDG + VY S DG R + QV+ L + G++ G G PL
Sbjct: 320 SAASFDGRISVYSIMGGSTDGLR-----QKQVDKLSSSFGNLDPFGTGQPLPPL 368
>gi|116256336 SEC31 homolog A isoform 4 [Homo sapiens]
Length = 1106
Score = 32.7 bits (73), Expect = 0.55
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 232 SWGQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCL 291
+W + S G D ++ LC ++ + +P+ + W P L
Sbjct: 267 AWSMADPELLLSCGKDAKI-------LCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVL 319
Query: 292 AISGFDGTVQVYD--ATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPL 343
+ + FDG + VY S DG R + QV+ L + G++ G G PL
Sbjct: 320 SAASFDGRISVYSIMGGSTDGLR-----QKQVDKLSSSFGNLDPFGTGQPLPPL 368
>gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens]
Length = 1181
Score = 32.7 bits (73), Expect = 0.55
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 232 SWGQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCL 291
+W + S G D ++ LC ++ + +P+ + W P L
Sbjct: 267 AWSMADPELLLSCGKDAKI-------LCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVL 319
Query: 292 AISGFDGTVQVYD--ATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPL 343
+ + FDG + VY S DG R + QV+ L + G++ G G PL
Sbjct: 320 SAASFDGRISVYSIMGGSTDGLR-----QKQVDKLSSSFGNLDPFGTGQPLPPL 368
>gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 32.7 bits (73), Expect = 0.55
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 232 SWGQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCL 291
+W + S G D ++ LC ++ + +P+ + W P L
Sbjct: 267 AWSMADPELLLSCGKDAKI-------LCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVL 319
Query: 292 AISGFDGTVQVYD--ATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPL 343
+ + FDG + VY S DG R + QV+ L + G++ G G PL
Sbjct: 320 SAASFDGRISVYSIMGGSTDGLR-----QKQVDKLSSSFGNLDPFGTGQPLPPL 368
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 32.3 bits (72), Expect = 0.72
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 214 NRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQ--CPVSV 271
N + PGSGG G+ G GP P L + R C ++P D P Q P
Sbjct: 89 NEAASPGSGGGGGGLGPGAHGYGPSPIDLWLDAP-RSCRMEPPDGPPPPPQQQPPPPPQP 147
Query: 272 PSPDPELLRVTWAPGLK 288
P P P+ ++A +K
Sbjct: 148 PQPAPQATSCSFAQNIK 164
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 32.3 bits (72), Expect = 0.72
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 194 CCASGRLGLVDTRQKWAPLENRSPGPGSG-GERWCAEVGSWGQGPGPSIASLGS 246
C A+ R R+ PL++R PGSG G R C G+WG G GP A+ S
Sbjct: 189 CRAAPRRSARPFRRPGLPLKSR---PGSGTGARSC---GTWGSGGGPGTAAASS 236
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 32.3 bits (72), Expect = 0.72
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 194 CCASGRLGLVDTRQKWAPLENRSPGPGSG-GERWCAEVGSWGQGPGPSIASLGS 246
C A+ R R+ PL++R PGSG G R C G+WG G GP A+ S
Sbjct: 189 CRAAPRRSARPFRRPGLPLKSR---PGSGTGARSC---GTWGSGGGPGTAAASS 236
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 32.3 bits (72), Expect = 0.72
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 194 CCASGRLGLVDTRQKWAPLENRSPGPGSG-GERWCAEVGSWGQGPGPSIASLGS 246
C A+ R R+ PL++R PGSG G R C G+WG G GP A+ S
Sbjct: 189 CRAAPRRSARPFRRPGLPLKSR---PGSGTGARSC---GTWGSGGGPGTAAASS 236
>gi|58331266 WD repeat domain 59 [Homo sapiens]
Length = 974
Score = 32.0 bits (71), Expect = 0.94
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 23/92 (25%)
Query: 280 RVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMD 339
+V W NCLA S DG V+++D + VE L H I +G+D
Sbjct: 153 QVKWNKKNANCLATS-HDGDVRIWDKRK---------PSTAVEYLAAHLSKI----HGLD 198
Query: 340 PAPLVTTHTWHPCRPRTLLSATNDASLHVWDW 371
WHP L +++ D S+ WD+
Sbjct: 199 ---------WHPDSEHILATSSQDNSVKFWDY 221
>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
Length = 4967
Score = 31.2 bits (69), Expect = 1.6
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 206 RQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDG 248
R WA E SP PG GGE W G G G + S G DG
Sbjct: 694 RVGWASTEGYSPYPG-GGEEW------GGNGVGDDLFSYGFDG 729
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 31.2 bits (69), Expect = 1.6
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 195 CASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVG-SWGQGPGPSIASLGSDGRLCLL 253
C++GRLG PL R P G GG +E S G+ P S AS SDG L+
Sbjct: 524 CSAGRLG---------PLGRRGPAGGVGGGYGESESSASEGESPAFSSASSDSDGSGGLV 574
Query: 254 DPRDL 258
P+ L
Sbjct: 575 WPQQL 579
>gi|7656991 coronin, actin binding protein, 1C isoform 1 [Homo
sapiens]
Length = 474
Score = 30.8 bits (68), Expect = 2.1
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 86 IFDLKHVPHTRLLVTSGLPGCYLQVWQVAEDSDVIKAVSTIAVHE 130
+ D+ PH ++ SG C + VWQ+ E+ + + + E
Sbjct: 83 VLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILE 127
Score = 30.0 bits (66), Expect = 3.6
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 278 LLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDG-TRSQVEPLFTHRGHIFLDGN 336
+L + W P +A D TV V+ ++G T S EP+ GH
Sbjct: 83 VLDIDWCPHNDQVIASGSEDCTVMVWQIP-------ENGLTLSLTEPVVILEGH------ 129
Query: 337 GMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWD 370
+ V WHP LLSA D ++ +W+
Sbjct: 130 ----SKRVGIVAWHPTARNVLLSAGCDNAIIIWN 159
>gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens]
Length = 463
Score = 30.4 bits (67), Expect = 2.7
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 260 HPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDG 316
+PVSS+ P +P P L R + +PG+ + +G G + D TS GT + +G
Sbjct: 157 NPVSSLGNPNLLPLAHPSLQRNSMSPGVTHRPPSAGNTGGLMGGDLTSGAGTSAGNG 213
>gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens]
Length = 473
Score = 30.4 bits (67), Expect = 2.7
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 260 HPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDG 316
+PVSS+ P +P P L R + +PG+ + +G G + D TS GT + +G
Sbjct: 159 NPVSSLGNPNLLPLAHPSLQRNSMSPGVTHRPPSAGNTGGLMGGDLTSGAGTSAGNG 215
>gi|13699824 kinesin family member 11 [Homo sapiens]
Length = 1056
Score = 30.4 bits (67), Expect = 2.7
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 119 VIKAVSTIAVHEKEE--SLWPRVAVFSTLAPGVLHGARLRSLQV--VDLESRKTTYTSDV 174
+IK + I VH K+E + + A T A +++ RS V V + ++TT
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI---- 250
Query: 175 SDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRS 216
D EEL + L+ A GR G VD R + A N+S
Sbjct: 251 -DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQS 291
>gi|51242945 striatin, calmodulin binding protein [Homo sapiens]
Length = 780
Score = 30.4 bits (67), Expect = 2.7
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 304 DATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATND 363
D+ ++D ++D R P FT R H DG + +HP P L++A+ D
Sbjct: 436 DSLTYDIANNKDALRKTWNPKFTLRSH--FDG--------IRALAFHPIEP-VLITASED 484
Query: 364 ASLHVWD 370
+L +W+
Sbjct: 485 HTLKMWN 491
>gi|4504421 hepatic leukemia factor [Homo sapiens]
Length = 295
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 306 TSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPLVTTHTWHP 351
T WD T DG Q+E + FL NG+ P+P H+ HP
Sbjct: 68 TLWDKTLPYDGDTFQLEYMDLEE---FLSENGIPPSPSQHDHSPHP 110
>gi|41349446 stromal interaction molecule 2 [Homo sapiens]
Length = 833
Score = 30.4 bits (67), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 260 HPVSSVQCPVSVPSPDPELLRVTWAPGL 287
HP P S+PSPDP++L V+ P L
Sbjct: 630 HPHHPQHTPHSLPSPDPDILSVSSCPAL 657
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,952,851
Number of Sequences: 37866
Number of extensions: 862722
Number of successful extensions: 2444
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 2375
Number of HSP's gapped (non-prelim): 99
length of query: 378
length of database: 18,247,518
effective HSP length: 104
effective length of query: 274
effective length of database: 14,309,454
effective search space: 3920790396
effective search space used: 3920790396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.