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Search of human proteins with 239741640
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741640 PREDICTED: hypothetical protein XP_002342268 [Homo
sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747774 PREDICTED: hypothetical protein XP_002348244 [Homo ... 314 1e-86
gi|239741640 PREDICTED: hypothetical protein XP_002342268 [Homo ... 314 1e-86
gi|239753202 PREDICTED: hypothetical protein [Homo sapiens] 275 1e-74
gi|239757289 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo ... 33 0.11
gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo ... 33 0.11
gi|65508004 Wilms tumor 1 isoform D [Homo sapiens] 30 0.91
gi|65507908 Wilms tumor 1 isoform C [Homo sapiens] 30 0.91
gi|65507817 Wilms tumor 1 isoform B [Homo sapiens] 30 0.91
gi|65507714 Wilms tumor 1 isoform A [Homo sapiens] 30 0.91
gi|4557871 transferrin [Homo sapiens] 30 0.91
gi|93352551 CWF19-like 1, cell cycle control [Homo sapiens] 30 0.91
gi|126090909 engrailed homeobox 1 [Homo sapiens] 29 1.2
gi|110735443 delta-like 1 [Homo sapiens] 29 1.6
gi|4503123 connective tissue growth factor [Homo sapiens] 29 1.6
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 28 2.0
gi|67010025 Sp4 transcription factor [Homo sapiens] 28 2.0
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 28 2.0
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 28 2.7
gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens] 28 2.7
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 28 3.5
gi|190343021 Sec24-related protein D [Homo sapiens] 28 3.5
gi|142976757 immediate early response 5 [Homo sapiens] 27 4.5
gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo sap... 27 4.5
gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo sap... 27 4.5
gi|239741831 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|223646113 Sp9 transcription factor homolog [Homo sapiens] 27 5.9
gi|152963637 zinc finger protein 787 [Homo sapiens] 27 5.9
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 27 5.9
gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens] 27 7.7
>gi|239747774 PREDICTED: hypothetical protein XP_002348244 [Homo
sapiens]
Length = 144
Score = 314 bits (805), Expect = 1e-86
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MMYMTSAYSNMLTDYTPVILMAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGK 60
MMYMTSAYSNMLTDYTPVILMAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGK
Sbjct: 1 MMYMTSAYSNMLTDYTPVILMAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGK 60
Query: 61 EIPRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLG 120
EIPRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLG
Sbjct: 61 EIPRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLG 120
Query: 121 GVCFFCLASLGSRCMLSYLSGGWC 144
GVCFFCLASLGSRCMLSYLSGGWC
Sbjct: 121 GVCFFCLASLGSRCMLSYLSGGWC 144
>gi|239741640 PREDICTED: hypothetical protein XP_002342268 [Homo
sapiens]
Length = 144
Score = 314 bits (805), Expect = 1e-86
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MMYMTSAYSNMLTDYTPVILMAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGK 60
MMYMTSAYSNMLTDYTPVILMAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGK
Sbjct: 1 MMYMTSAYSNMLTDYTPVILMAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGK 60
Query: 61 EIPRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLG 120
EIPRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLG
Sbjct: 61 EIPRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLG 120
Query: 121 GVCFFCLASLGSRCMLSYLSGGWC 144
GVCFFCLASLGSRCMLSYLSGGWC
Sbjct: 121 GVCFFCLASLGSRCMLSYLSGGWC 144
>gi|239753202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 275 bits (702), Expect = 1e-74
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 21 MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG 80
MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG
Sbjct: 1 MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG 60
Query: 81 WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS 140
WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS
Sbjct: 61 WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS 120
Query: 141 GGWC 144
GGWC
Sbjct: 121 GGWC 124
>gi|239757289 PREDICTED: hypothetical protein [Homo sapiens]
Length = 545
Score = 32.7 bits (73), Expect = 0.11
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 11 MLTDYTPVILMAVAAAVVAAAIT---PAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPC 67
+L + P ++AVA A V + PAA + C GV +A +P CP
Sbjct: 408 VLAEAEPTEVVAVATAWVPVPVALAGPAAPRAC--------GVAEAAGPASFAVLPPCPG 459
Query: 68 ICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYP 116
P S+ PG ++ + +L+P S+ Q +GG R D P
Sbjct: 460 CLP--WHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGGGRSDVQP 506
>gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo
sapiens]
Length = 291
Score = 32.7 bits (73), Expect = 0.11
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 11 MLTDYTPVILMAVAAAVVAAAIT---PAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPC 67
+L + P ++AVA A V + PAA + C GV +A +P CP
Sbjct: 154 VLAEAEPTEVVAVATAWVPVPVALAGPAAPRAC--------GVAEAAGPASFAVLPPCPG 205
Query: 68 ICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYP 116
P S+ PG ++ + +L+P S+ Q +GG R D P
Sbjct: 206 CLP--WHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGGGRSDVQP 252
>gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo
sapiens]
Length = 291
Score = 32.7 bits (73), Expect = 0.11
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 11 MLTDYTPVILMAVAAAVVAAAIT---PAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPC 67
+L + P ++AVA A V + PAA + C GV +A +P CP
Sbjct: 154 VLAEAEPTEVVAVATAWVPVPVALAGPAAPRAC--------GVAEAAGPASFAVLPPCPG 205
Query: 68 ICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYP 116
P S+ PG ++ + +L+P S+ Q +GG R D P
Sbjct: 206 CLP--WHSSQKPGPRLRQWLWKLQPQSREQRGAGGPGAGVGGGRSDVQP 252
>gi|65508004 Wilms tumor 1 isoform D [Homo sapiens]
Length = 517
Score = 29.6 bits (65), Expect = 0.91
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 49 GVGSSAPSDVGKEI-------PRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGV 101
G S P +G ++ P P + GC G Q P PG
Sbjct: 60 GASGSEPQQMGSDVRDLNALLPAVPSLGGGGGCALPVSG------AAQWAPVLDFAPPGA 113
Query: 102 SAACTLGGPRKDPYP 116
SA +LGGP P P
Sbjct: 114 SAYGSLGGPAPPPAP 128
>gi|65507908 Wilms tumor 1 isoform C [Homo sapiens]
Length = 500
Score = 29.6 bits (65), Expect = 0.91
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 49 GVGSSAPSDVGKEI-------PRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGV 101
G S P +G ++ P P + GC G Q P PG
Sbjct: 60 GASGSEPQQMGSDVRDLNALLPAVPSLGGGGGCALPVSG------AAQWAPVLDFAPPGA 113
Query: 102 SAACTLGGPRKDPYP 116
SA +LGGP P P
Sbjct: 114 SAYGSLGGPAPPPAP 128
>gi|65507817 Wilms tumor 1 isoform B [Homo sapiens]
Length = 514
Score = 29.6 bits (65), Expect = 0.91
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 49 GVGSSAPSDVGKEI-------PRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGV 101
G S P +G ++ P P + GC G Q P PG
Sbjct: 60 GASGSEPQQMGSDVRDLNALLPAVPSLGGGGGCALPVSG------AAQWAPVLDFAPPGA 113
Query: 102 SAACTLGGPRKDPYP 116
SA +LGGP P P
Sbjct: 114 SAYGSLGGPAPPPAP 128
>gi|65507714 Wilms tumor 1 isoform A [Homo sapiens]
Length = 497
Score = 29.6 bits (65), Expect = 0.91
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 49 GVGSSAPSDVGKEI-------PRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGV 101
G S P +G ++ P P + GC G Q P PG
Sbjct: 60 GASGSEPQQMGSDVRDLNALLPAVPSLGGGGGCALPVSG------AAQWAPVLDFAPPGA 113
Query: 102 SAACTLGGPRKDPYP 116
SA +LGGP P P
Sbjct: 114 SAYGSLGGPAPPPAP 128
>gi|4557871 transferrin [Homo sapiens]
Length = 698
Score = 29.6 bits (65), Expect = 0.91
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 51 GSSAPSDVGKEIPRCPCICPNCGCGS 76
GS AP G + P+ +CP CGC +
Sbjct: 175 GSCAPCADGTDFPQLCQLCPGCGCST 200
>gi|93352551 CWF19-like 1, cell cycle control [Homo sapiens]
Length = 538
Score = 29.6 bits (65), Expect = 0.91
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 13/43 (30%)
Query: 110 PRKDPYPCRLGGVCFFCLAS----------LGSRCMLSYLSGG 142
PRK P P G C+FCLAS +G+ C L+ GG
Sbjct: 318 PRKPPQP---PGPCWFCLASPEVEKHLVVNIGTHCYLALAKGG 357
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 29.3 bits (64), Expect = 1.2
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 17 PVILMAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIP 63
P A AAA VAAA AA + D G GG G+ +P G + P
Sbjct: 198 PAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGG-GAGSPGAQGTKYP 243
>gi|110735443 delta-like 1 [Homo sapiens]
Length = 723
Score = 28.9 bits (63), Expect = 1.6
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 72 CGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVC 123
C G+ GS+ RP A C LG DP PC+ GG C
Sbjct: 298 CKNGATCTNTGQGSYTCSCRPGY------TGATCELGIDECDPSPCKNGGSC 343
>gi|4503123 connective tissue growth factor [Homo sapiens]
Length = 349
Score = 28.9 bits (63), Expect = 1.6
Identities = 31/121 (25%), Positives = 38/121 (31%), Gaps = 29/121 (23%)
Query: 27 VVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPC----ICPNCGCGSEAPGWQ 82
++A PA Q C C P + PRCP + CGC Q
Sbjct: 16 LLALCSRPAVGQNCSGPC--------RCPDE---PAPRCPAGVSLVLDGCGC-CRVCAKQ 63
Query: 83 VGSFRVQLRPPSQVQDPGVSAACTLGGP---------RKDPYPCRLGGVCFFCLASLGSR 133
+G + P DP C G P KD PC GG + S S
Sbjct: 64 LGELCTERDP----CDPHKGLFCDFGSPANRKIGVCTAKDGAPCIFGGTVYRSGESFQSS 119
Query: 134 C 134
C
Sbjct: 120 C 120
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 28.5 bits (62), Expect = 2.0
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 20 LMAVAAAVVAAAITPAAT-QRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEA 78
L V + +I+P AT C G +F G + S + G R + P C A
Sbjct: 268 LQVVCETFQSDSISPKATISGCHRGNSFDGSLSSQTSQERGPSHSRASLVIPPCQRSRYA 327
Query: 79 PGWQVGSFRVQLRP 92
+ V R L+P
Sbjct: 328 TYFDVAVLRCLLQP 341
>gi|67010025 Sp4 transcription factor [Homo sapiens]
Length = 784
Score = 28.5 bits (62), Expect = 2.0
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 59 GKEIPRCPCICPNC----GCGSEAPG 80
GK + R C CPNC G GS PG
Sbjct: 617 GKRLRRVACSCPNCREGEGRGSNEPG 642
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 28.5 bits (62), Expect = 2.0
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 99 PGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLSGGW 143
PG +A CTLGG R+ P +C C + R +L L W
Sbjct: 14 PGAAAVCTLGGTREIP-------LCAGCDQHILDRFILKALDRHW 51
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 28.1 bits (61), Expect = 2.7
Identities = 24/87 (27%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 22 AVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPGW 81
A AAA AAA AA +GC + G G P C G G
Sbjct: 271 AAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPA-CSAAGGGPFVNVS 329
Query: 82 QVGSFRVQLRPPSQVQDPGVSAACTLG 108
+G F Q AAC G
Sbjct: 330 NLGGFGSGGSAQPLHQGTAAGAACAQG 356
>gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens]
Length = 580
Score = 28.1 bits (61), Expect = 2.7
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 44 CTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPGWQVGS---FRVQLRPP 93
C + + S S+ KE+ C CG G PGW GS ++Q++ P
Sbjct: 414 CGLNHSLVLSQSSEFSKELLGC-----GCGAGGRLPGWPKGSASFVKLQVKVP 461
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 27.7 bits (60), Expect = 3.5
Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 24/106 (22%)
Query: 40 CDWGCTFHGGVG-SSAPSDVGKEIPRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQD 98
C CT GV S + GK RCP CG E P VG+F V
Sbjct: 695 CWQACTCPVGVACDSVSGECGK---RCPAGFQGEDCGQECP---VGTFGV---------- 738
Query: 99 PGVSAACTLGGPRKDPYPCR-LGGVCFFCLASLGSRCMLSYLSGGW 143
S++C+ GG PC + G C G C G W
Sbjct: 739 -NCSSSCSCGGA-----PCHGVTGQCRCPPGRTGEDCEADCPEGRW 778
>gi|190343021 Sec24-related protein D [Homo sapiens]
Length = 1032
Score = 27.7 bits (60), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 75 GSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYP 116
GS+ Q+ S+ + PPSQ PG +A +L P + P P
Sbjct: 121 GSQLSAMQINSYGSGMAPPSQ-GPPGPLSATSLQTPPRPPQP 161
>gi|142976757 immediate early response 5 [Homo sapiens]
Length = 327
Score = 27.3 bits (59), Expect = 4.5
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 33 TPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPGWQVG 84
TPAAT R C AP E P P +CP C + G G
Sbjct: 188 TPAATPRAACCC---------APQPAEDEPPAPPAVCPRKRCAAGVGGGPAG 230
>gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 27.3 bits (59), Expect = 4.5
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 85 SFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASL 130
S RVQ+RP V PGV + PR +P G + LA+L
Sbjct: 94 SLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAAL 139
>gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 27.3 bits (59), Expect = 4.5
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 85 SFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASL 130
S RVQ+RP V PGV + PR +P G + LA+L
Sbjct: 94 SLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAAL 139
>gi|239741831 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 27.3 bits (59), Expect = 4.5
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 85 SFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASL 130
S RVQ+RP V PGV + PR +P G + LA+L
Sbjct: 94 SLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAAL 139
>gi|223646113 Sp9 transcription factor homolog [Homo sapiens]
Length = 484
Score = 26.9 bits (58), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 22 AVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNC 72
AVAAA +A I+ AA G S+ + R C CPNC
Sbjct: 273 AVAAAAASAMISGAAA----------AAAGGSSARSARRYSGRATCDCPNC 313
>gi|152963637 zinc finger protein 787 [Homo sapiens]
Length = 382
Score = 26.9 bits (58), Expect = 5.9
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 66 PCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYP 116
P +CP CG G P S LR ++ PGV+A R+ P
Sbjct: 177 PFVCPRCGRGFSQP----KSLARHLRLHPELSGPGVAAKVLAASVRRAKGP 223
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 26.9 bits (58), Expect = 5.9
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 78 APGWQVGSFRVQLRPPSQVQDPGVSAACTLG----GPRKDPYPCRLGGVCFFCLASLGS 132
+P W G V + P + Q VS+A LG R P P G+CFF +++GS
Sbjct: 665 SPEWG-GEQGVPVPPWAHRQSSAVSSALALGPRYPNSRCSPAPRIWAGLCFFPGSAIGS 722
>gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens]
Length = 206
Score = 26.6 bits (57), Expect = 7.7
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 23/80 (28%)
Query: 14 DYTPVILMAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPR--------- 64
D TP + A + TQ C GS +PSD GK++P
Sbjct: 130 DCTPSLEAGNPAPAAPCPLGEPKTQACS---------GSESPSDSGKDLPEPSKRGPPHG 180
Query: 65 ----CPCICPNCGCGSEAPG 80
CPC+ G S+A G
Sbjct: 181 WPKLCPCLRSGIG-SSQALG 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,652,509
Number of Sequences: 37866
Number of extensions: 342189
Number of successful extensions: 1379
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1364
Number of HSP's gapped (non-prelim): 47
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.