Guide to the Human Genome
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Search of human proteins with 239741607

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741607 PREDICTED: hypothetical protein XP_002342248 [Homo
sapiens]
         (118 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747741 PREDICTED: hypothetical protein XP_002348258 [Homo ...   258   5e-70
gi|239741607 PREDICTED: hypothetical protein XP_002342248 [Homo ...   258   5e-70
gi|169210552 PREDICTED: hypothetical protein [Homo sapiens]            35   0.010
gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchan...    35   0.017
gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]            33   0.037
gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]            33   0.048
gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]            33   0.048
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]       33   0.048
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho...    33   0.048
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho...    33   0.048
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho...    33   0.048
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho...    33   0.048
gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens]        33   0.048
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]        33   0.048
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    33   0.063
gi|62868208 GIY-YIG domain containing 1 isoform 1 [Homo sapiens]       32   0.082
gi|13129004 GIY-YIG domain containing 2 isoform 1 [Homo sapiens]       32   0.082
gi|112382370 folate receptor 3 precursor [Homo sapiens]                32   0.11 
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [...    32   0.14 
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     31   0.18 
gi|93277096 limbin [Homo sapiens]                                      31   0.18 
gi|34098976 marapsin 2 [Homo sapiens]                                  31   0.18 
gi|23111009 myogenic differentiation 1 [Homo sapiens]                  31   0.24 
gi|156151413 MUS81 endonuclease homolog [Homo sapiens]                 31   0.24 
gi|62241036 hypothetical protein LOC541565 [Homo sapiens]              31   0.24 
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]            30   0.31 
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]            30   0.31 
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]            30   0.31 
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]            30   0.31 
gi|237757310 synaptojanin 1 isoform a [Homo sapiens]                   30   0.41 

>gi|239747741 PREDICTED: hypothetical protein XP_002348258 [Homo
           sapiens]
          Length = 118

 Score =  258 bits (660), Expect = 5e-70
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR 60
           MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR
Sbjct: 1   MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR 60

Query: 61  RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG 118
           RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG
Sbjct: 61  RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG 118


>gi|239741607 PREDICTED: hypothetical protein XP_002342248 [Homo
           sapiens]
          Length = 118

 Score =  258 bits (660), Expect = 5e-70
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR 60
           MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR
Sbjct: 1   MEAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRR 60

Query: 61  RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG 118
           RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG
Sbjct: 61  RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLSCEAAG 118


>gi|169210552 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 220

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 46 PQRKVPGGRPAPGRRRPWPENHHEAPPSPGDPGDCCLW---RKQRCCSW 91
          P  +  GG  +PG         H  P  PG    CCLW   RK+ CC W
Sbjct: 14 PSSQDSGGGTSPGTLE---SREHRPPWMPGRRECCCLWTLRRKEHCCLW 59


>gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchange
           factor 4 [Homo sapiens]
          Length = 368

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 9   HRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRRRPWPENHH 68
           H P T    R +  L        + + +T G+  L PP+   P       R  PW     
Sbjct: 138 HTPGTATHLRPLKVLTPDSENPPSPSQLTIGSSPLIPPRAACPAWSLQQVRCTPWTHPAA 197

Query: 69  EAPPSPGDP--------GDCCLWRKQRCCS 90
            APP P  P        G  C+ R Q+C S
Sbjct: 198 AAPPPPAQPSPSLWLELGPACV-RAQQCPS 226


>gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 302

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 37/122 (30%), Positives = 42/122 (34%), Gaps = 32/122 (26%)

Query: 2   EAGNLAAHRPSTQPGRR--GVSCLAQKHHPQRTQAVVTTGAEVLAP---------PQRKV 50
           E   L A RP+  PG R  G    A+  HP+R+      G     P         P R V
Sbjct: 148 EPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPV 207

Query: 51  PGGRPAPGRR-------------RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRN 97
            GGR  PG R             RPW       PP P         R +  CS     RN
Sbjct: 208 LGGRSGPGDRSLRSAHLGGAGQGRPWTA---RPPPIPHTRP-----RPKCACSTPGTNRN 259

Query: 98  LG 99
           LG
Sbjct: 260 LG 261


>gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 302

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 37/122 (30%), Positives = 42/122 (34%), Gaps = 32/122 (26%)

Query: 2   EAGNLAAHRPSTQPGRR--GVSCLAQKHHPQRTQAVVTTGAEVLAP---------PQRKV 50
           E   L A RP+  PG R  G    A+  HP+R+      G     P         P R V
Sbjct: 148 EPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPV 207

Query: 51  PGGRPAPGRR-------------RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRN 97
            GGR  PG R             RPW       PP P         R +  CS     RN
Sbjct: 208 LGGRSGPGDRSLRSAHLGGAGQGRPWTA---RPPPIPHTRP-----RPKCACSAPGTNRN 259

Query: 98  LG 99
           LG
Sbjct: 260 LG 261


>gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 302

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 37/122 (30%), Positives = 42/122 (34%), Gaps = 32/122 (26%)

Query: 2   EAGNLAAHRPSTQPGRR--GVSCLAQKHHPQRTQAVVTTGAEVLAP---------PQRKV 50
           E   L A RP+  PG R  G    A+  HP+R+      G     P         P R V
Sbjct: 148 EPRGLPAQRPTWGPGTRSRGPPRRARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPV 207

Query: 51  PGGRPAPGRR-------------RPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRN 97
            GGR  PG R             RPW       PP P         R +  CS     RN
Sbjct: 208 LGGRSGPGDRSLRSAHLGGAGQGRPWTA---RPPPIPHTRP-----RPKCACSAPGTNRN 259

Query: 98  LG 99
           LG
Sbjct: 260 LG 261


>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
          Length = 237

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 42  VLAPPQRKVPGGRPA---PGR-RRPWPENHHEAPPSPGDP 77
           VLA P   +PGGR A    GR RRP P+    APP P  P
Sbjct: 74  VLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPP 113


>gi|209954781 neurotrophic factor artemin isoform 1 precursor
          [Homo sapiens]
          Length = 220

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 42 VLAPPQRKVPGGRPA---PGR-RRPWPENHHEAPPSPGDP 77
          VLA P   +PGGR A    GR RRP P+    APP P  P
Sbjct: 57 VLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPP 96


>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 42  VLAPPQRKVPGGRPA---PGR-RRPWPENHHEAPPSPGDP 77
           VLA P   +PGGR A    GR RRP P+    APP P  P
Sbjct: 65  VLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPP 104


>gi|209954776 neurotrophic factor artemin isoform 1 precursor
          [Homo sapiens]
          Length = 220

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 42 VLAPPQRKVPGGRPA---PGR-RRPWPENHHEAPPSPGDP 77
          VLA P   +PGGR A    GR RRP P+    APP P  P
Sbjct: 57 VLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPP 96


>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 42  VLAPPQRKVPGGRPA---PGR-RRPWPENHHEAPPSPGDP 77
           VLA P   +PGGR A    GR RRP P+    APP P  P
Sbjct: 65  VLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPP 104


>gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens]
          Length = 949

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 17/68 (25%)

Query: 51  PGGRPAPGRRRPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKR 110
           PG  P P R  P PE    APP P  P                   N G+  +    G+R
Sbjct: 433 PGRAPIPHRHYPAPEGPAPAPPGPLPPAP-----------------NSGTGPSGVAGGRR 475

Query: 111 DLSCEAAG 118
              CEAAG
Sbjct: 476 LGKCEAAG 483


>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
          Length = 1488

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 17/68 (25%)

Query: 51  PGGRPAPGRRRPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKR 110
           PG  P P R  P PE    APP P  P                   N G+  +    G+R
Sbjct: 638 PGRAPIPHRHYPAPEGPAPAPPGPLPPAP-----------------NSGTGPSGVAGGRR 680

Query: 111 DLSCEAAG 118
              CEAAG
Sbjct: 681 LGKCEAAG 688


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 45  PPQRKVPGGRPAPGRRR--PWPENHHEAPPSPGDPG 78
           PP R   GG P  GR+   P+ + HH+ PP PG PG
Sbjct: 233 PPHRG--GGEPRGGRQHHPPYHQQHHQGPP-PGGPG 265



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 45  PPQRKVPGGRPAPGRRRPWPENHHEAPPSP 74
           PP ++ P  +P P +  P P+ H +  P P
Sbjct: 72  PPPQQPPPQQPPPHQPPPHPQPHQQQQPPP 101


>gi|62868208 GIY-YIG domain containing 1 isoform 1 [Homo sapiens]
          Length = 275

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 51  PGGRPAPGRRRPWPENHHEAPPSPGDPGDCC 81
           P   PAP RRR  P +  E  P  GDPG CC
Sbjct: 157 PPQAPAP-RRRAGPFDDAEPEPDQGDPGACC 186


>gi|13129004 GIY-YIG domain containing 2 isoform 1 [Homo sapiens]
          Length = 275

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 51  PGGRPAPGRRRPWPENHHEAPPSPGDPGDCC 81
           P   PAP RRR  P +  E  P  GDPG CC
Sbjct: 157 PPQAPAP-RRRAGPFDDAEPEPDQGDPGACC 186


>gi|112382370 folate receptor 3 precursor [Homo sapiens]
          Length = 245

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 67 HHEAPPSPGDP--GDCCLWRKQRCCS 90
          HH+  PSP D   G C  W+K  CC+
Sbjct: 42 HHKTQPSPEDELYGQCSPWKKNACCT 67


>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
            sapiens]
          Length = 1584

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 16/36 (44%), Positives = 18/36 (50%)

Query: 44   APPQRKVPGGRPAPGRRRPWPENHHEAPPSPGDPGD 79
            A P    P   P P +  P P N   APPS GDPG+
Sbjct: 1409 AQPPPPPPPPPPPPQQPLPPPPNLEPAPPSLGDPGE 1444


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 2   EAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRRR 61
           E G      P  +PG +G   L  +  P         GA    P +R   G R  PG   
Sbjct: 345 ERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGF-PGERGEKGDRGFPGTSL 403

Query: 62  PWPENHHEAPPSPGDPG 78
           P P      P  PG PG
Sbjct: 404 PGPSGRDGLPGPPGSPG 420


>gi|93277096 limbin [Homo sapiens]
          Length = 1308

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 14/77 (18%)

Query: 19 GVSCLAQKHHPQRTQAVVTTGAEVLAPPQ---RKVPGGRPAPGRRRPWPENHHEAPPSPG 75
          G  CL     P+        GA+    PQ   R  PG R  PGR    PE+  +  P   
Sbjct: 27 GRGCLGASSRPRWRPL----GAQPPRDPQVAPRSGPGLRIPPGRSGAGPESSTQDLP--- 79

Query: 76 DPGDCCLWRKQRCCSWK 92
              C +W K  CC +K
Sbjct: 80 ----CMIWPKVECCHFK 92


>gi|34098976 marapsin 2 [Homo sapiens]
          Length = 326

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 27 HHPQRTQAVVTTGAEVLAPP--QRKVPGGRPAPGRRRPWPENHHEA 70
          H     Q +  TG+     P  + K+ GG PAP R+ PW  + H A
Sbjct: 35 HRQPENQGISLTGSVACGRPSMEGKILGGVPAPERKWPWQVSVHYA 80


>gi|23111009 myogenic differentiation 1 [Homo sapiens]
          Length = 320

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 55  PAPGRRRPWPENHHEAPPSPGDPGDCCLWRKQRCCSWKAELRNLGSARTSTVTGKRDLS 113
           PAPG R    + H  AP      G C LW  + C   K +  N    + +T+  +R LS
Sbjct: 71  PAPGARE---DEHVRAPSGHHQAGRCLLWACKAC---KRKTTNADRRKAATMRERRRLS 123


>gi|156151413 MUS81 endonuclease homolog [Homo sapiens]
          Length = 551

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 2   EAGNLAAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRRR 61
           +AG   ++ P+   G R +  +  + H         T  E+L    +K P  R APG  R
Sbjct: 123 KAGGSGSYWPARHSGARVILLVLYREHLNPNGHHFLTKEELLQRCAQKSP--RVAPGSAR 180

Query: 62  PWP 64
           PWP
Sbjct: 181 PWP 183


>gi|62241036 hypothetical protein LOC541565 [Homo sapiens]
          Length = 365

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 11  PSTQPGRRGVS---CLAQKHHPQRTQAVVTTGAEVLAPPQRKVPGGRPAPGRRRPWPENH 67
           P   PG RG      L+Q  H         TGA+  +PP+ +VP   P      P    +
Sbjct: 234 PLHTPGNRGQGPWELLSQTEH---------TGAKAASPPKVEVPSANPPRLPETPVEPTY 284

Query: 68  HEAPPSPGDPGDCCLWRK 85
           H  P S G   D   W K
Sbjct: 285 H-LPSSQGHKRDISHWDK 301


>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 7   AAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVP--GGRPAPGRRRPWP 64
           A  RP  +  +R V   A +  P+R     T G E  +  +R  P    RP P  RRP P
Sbjct: 67  ARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126


>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 7   AAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVP--GGRPAPGRRRPWP 64
           A  RP  +  +R V   A +  P+R     T G E  +  +R  P    RP P  RRP P
Sbjct: 67  ARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126


>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 175

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 11 PSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVL-APPQRKVPGGRPAPGRRRPWPENHHE 69
          P+   GRR      + H    +Q  +   A ++  P  R  P  RPAP R    P N H 
Sbjct: 2  PNKASGRRQGRARGRPH----SQVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHP 57

Query: 70 APPSP-GDPGDCCLWRKQRCCS 90
           PP+    PG C    + RC S
Sbjct: 58 PPPAARTHPGSC----RARCPS 75


>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 7   AAHRPSTQPGRRGVSCLAQKHHPQRTQAVVTTGAEVLAPPQRKVP--GGRPAPGRRRPWP 64
           A  RP  +  +R V   A +  P+R     T G E  +  +R  P    RP P  RRP P
Sbjct: 67  ARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126


>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
          Length = 1612

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 6/39 (15%)

Query: 43   LAPPQRKVPGGRPAP--GRRRPWPENHH----EAPPSPG 75
            +APP R  P  RP P  G R P P         APPSPG
Sbjct: 1153 VAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPG 1191


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,590,417
Number of Sequences: 37866
Number of extensions: 398884
Number of successful extensions: 2374
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 2138
Number of HSP's gapped (non-prelim): 412
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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