Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239741603
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
(351 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 724 0.0
gi|239757315 PREDICTED: hypothetical protein [Homo sapiens] 52 8e-07
gi|239751820 PREDICTED: hypothetical protein [Homo sapiens] 52 8e-07
gi|239746311 PREDICTED: hypothetical protein XP_002343692 [Homo ... 52 8e-07
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 50 4e-06
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-05
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 46 6e-05
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 45 7e-05
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 45 7e-05
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 45 7e-05
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 45 7e-05
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 44 2e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 44 2e-04
gi|239750217 PREDICTED: hypothetical protein [Homo sapiens] 44 3e-04
gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo ... 44 3e-04
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 43 4e-04
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 43 4e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 43 4e-04
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 42 6e-04
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 42 6e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 42 6e-04
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens] 42 6e-04
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 42 8e-04
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 41 0.001
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 724 bits (1870), Expect = 0.0
Identities = 351/351 (100%), Positives = 351/351 (100%)
Query: 1 MGDLRGLTGDSKAEEGPRCPQFSINTAIRSPDSNTSFTPSLHFGQQSSYLQAQLPSQGST 60
MGDLRGLTGDSKAEEGPRCPQFSINTAIRSPDSNTSFTPSLHFGQQSSYLQAQLPSQGST
Sbjct: 1 MGDLRGLTGDSKAEEGPRCPQFSINTAIRSPDSNTSFTPSLHFGQQSSYLQAQLPSQGST 60
Query: 61 TPGPPEQPRKKGQAGHGQGEGMRSQQSAVLRGYPEAPVTFPAQFDVPLIEENQLSFAAAA 120
TPGPPEQPRKKGQAGHGQGEGMRSQQSAVLRGYPEAPVTFPAQFDVPLIEENQLSFAAAA
Sbjct: 61 TPGPPEQPRKKGQAGHGQGEGMRSQQSAVLRGYPEAPVTFPAQFDVPLIEENQLSFAAAA 120
Query: 121 RSLPFHLLQLVDLAAASVILHNDAHQELLELPFGQAGGIPLYPRAAPAPAARPSPDPGRR 180
RSLPFHLLQLVDLAAASVILHNDAHQELLELPFGQAGGIPLYPRAAPAPAARPSPDPGRR
Sbjct: 121 RSLPFHLLQLVDLAAASVILHNDAHQELLELPFGQAGGIPLYPRAAPAPAARPSPDPGRR 180
Query: 181 PPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPRRLRLRSQRFRPPSPG 240
PPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPRRLRLRSQRFRPPSPG
Sbjct: 181 PPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPRRLRLRSQRFRPPSPG 240
Query: 241 AARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLERP 300
AARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLERP
Sbjct: 241 AARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLERP 300
Query: 301 GRCKTGLWGHSAHTSHRLRISPKSESAPSCRAAVFSATQSLALPPSRHLSN 351
GRCKTGLWGHSAHTSHRLRISPKSESAPSCRAAVFSATQSLALPPSRHLSN
Sbjct: 301 GRCKTGLWGHSAHTSHRLRISPKSESAPSCRAAVFSATQSLALPPSRHLSN 351
>gi|239757315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 52.0 bits (123), Expect = 8e-07
Identities = 54/169 (31%), Positives = 66/169 (39%), Gaps = 38/169 (22%)
Query: 166 APAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPR 225
A P A P P R P AA AP G LP P +W
Sbjct: 6 AEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPT------------NWVSP----- 48
Query: 226 RLRLRSQR---FRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDTAV 282
L+ RS +RP G + P P+P P P +P RAR PQPG RC A+
Sbjct: 49 -LQYRSSEDVSYRPQKAGPRSAIAP-----PQPPPAPPVPARARSPQPGPASRC-HSNAL 101
Query: 283 RWPRQAPYSSRGHDLERPGRCKTGLWGH-----SAHTSHRLRISPKSES 326
R P S+R L GR + WGH + HRL SP ++S
Sbjct: 102 R--SSIPSSAR---LASGGRRRARRWGHPQDAQKGGSGHRLP-SPPTQS 144
>gi|239751820 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 52.0 bits (123), Expect = 8e-07
Identities = 54/169 (31%), Positives = 66/169 (39%), Gaps = 38/169 (22%)
Query: 166 APAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPR 225
A P A P P R P AA AP G LP P +W
Sbjct: 6 AEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPT------------NWVSP----- 48
Query: 226 RLRLRSQR---FRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDTAV 282
L+ RS +RP G + P P+P P P +P RAR PQPG RC A+
Sbjct: 49 -LQYRSSEDVSYRPQKAGPRSAIAP-----PQPPPAPPVPARARSPQPGPASRC-HSNAL 101
Query: 283 RWPRQAPYSSRGHDLERPGRCKTGLWGH-----SAHTSHRLRISPKSES 326
R P S+R L GR + WGH + HRL SP ++S
Sbjct: 102 R--SSIPSSAR---LASGGRRRARRWGHPQDAQKGGSGHRLP-SPPTQS 144
>gi|239746311 PREDICTED: hypothetical protein XP_002343692 [Homo
sapiens]
Length = 144
Score = 52.0 bits (123), Expect = 8e-07
Identities = 54/169 (31%), Positives = 66/169 (39%), Gaps = 38/169 (22%)
Query: 166 APAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPR 225
A P A P P R P AA AP G LP P +W
Sbjct: 6 AEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPT------------NWVSP----- 48
Query: 226 RLRLRSQR---FRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDTAV 282
L+ RS +RP G + P P+P P P +P RAR PQPG RC A+
Sbjct: 49 -LQYRSSEDVSYRPQKAGPRSAIAP-----PQPPPAPPVPARARSPQPGPASRC-HSNAL 101
Query: 283 RWPRQAPYSSRGHDLERPGRCKTGLWGH-----SAHTSHRLRISPKSES 326
R P S+R L GR + WGH + HRL SP ++S
Sbjct: 102 R--SSIPSSAR---LASGGRRRARRWGHPQDAQKGGSGHRLP-SPPTQS 144
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 49.7 bits (117), Expect = 4e-06
Identities = 75/281 (26%), Positives = 101/281 (35%), Gaps = 48/281 (17%)
Query: 2 GDLRGLTGDSKAEEGPRCPQFSINTAIRSPDSNTSFTPSLHFGQQSSYLQAQLPSQGSTT 61
G G G + E P ++ D S T +L G Q L+ P Q +T
Sbjct: 4113 GGSHGQLGSGSSSEASSVPHLLAQPSVSLGDQPGSMTQNL-LGPQQPMLER--PMQNNTG 4169
Query: 62 PGPPEQPRKKGQAGHG-QGEG-------MRSQQSAVLRGYPEAPVTFPAQFDV--PLIEE 111
P PP+ P Q+G G G G +R+Q VL P+ P Q L+ +
Sbjct: 4170 PQPPK-PGPVLQSGQGLPGVGIMPTVGQLRAQLQGVLAKNPQLRHLSPQQQQQLQALLMQ 4228
Query: 112 NQLSFAAAARSLPFHLLQLVDLAAASVILHNDAHQELLELPFGQAGGIPLYPRAAPAPAA 171
QL + A R P + + +L Q GG P P+ P
Sbjct: 4229 RQLQQSQAVRQTPPYQEPGTQTSPLQGLLGCQP----------QLGGFP-GPQTGPLQEL 4277
Query: 172 RPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPRRLRLRS 231
P P P AP + GPVL +H P P +P + +RP +L
Sbjct: 4278 GAGPRPQGPPRLPAPPGALSTGPVLGPVH-PTPPPSSP---------QEPKRPSQL---- 4323
Query: 232 QRFRPPSPGAARSQLPETARRPRPRPRPALPR-RAREPQPG 271
PSP SQLP A+ P P P+ EP PG
Sbjct: 4324 -----PSPS---SQLPTEAQLPPTHPGTPKPQGPTLEPPPG 4356
Score = 33.5 bits (75), Expect = 0.29
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 149 LELPFGQAGGI-PLYPRAAPAPAARPSP-------DPGRRPPPAAP-APVVHVGPVLPLL 199
LE PFG G P P AAP SP DP PP P +P VGP P+L
Sbjct: 957 LEYPFGAKGDSDPESPLAAPILETPISPPPEANCTDPEPVPPMILPPSPGSPVGPASPIL 1016
Query: 200 HDPVGVPLAPL 210
+P+ +PL
Sbjct: 1017 MEPLPPQCSPL 1027
Score = 32.7 bits (73), Expect = 0.50
Identities = 36/117 (30%), Positives = 46/117 (39%), Gaps = 34/117 (29%)
Query: 170 AARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPRRLRL 229
+A P +P P P AP+P P PL V +P PL V
Sbjct: 4907 SAPPPEEPSPPPSPLAPSPA--SPPTEPL----VELPTEPLAEPPV-------------- 4946
Query: 230 RSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDTAVRWPR 286
PSP S PE+A RP+PR RP P + +P R ++ VRW R
Sbjct: 4947 -------PSPLPLASS-PESA-RPKPRARP--PEEGEDSRP---PRLKKWKGVRWKR 4989
Score = 31.2 bits (69), Expect = 1.5
Identities = 32/113 (28%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 163 PRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVG-VPLAPLGHGGVDWAENK 221
P + P A+P P +PPP + P L DP VP +P +
Sbjct: 2371 PGSYTDPYAQPPLTPRPQPPPPESCCAL---PPRSLPSDPFSRVPASPQSQS------SS 2421
Query: 222 ERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALP----RRAREPQP 270
+ P R S PSP R Q P+ RP RP+ P + PQP
Sbjct: 2422 QSPLTPRPLSAEAFCPSPVTPRFQSPDPYSRPPSRPQSRDPFAPLHKPPRPQP 2474
Score = 29.3 bits (64), Expect = 5.5
Identities = 31/115 (26%), Positives = 39/115 (33%), Gaps = 19/115 (16%)
Query: 160 PLYPRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHG-GVDWA 218
PL +P+ PS P PP P P + P++ P PL L + G
Sbjct: 910 PLPEELPLSPSGEPSLSPQLMPPDPLPPP---LSPIITAAAPPALSPLGELEYPFGAKGD 966
Query: 219 ENKERPRRLRLRSQRFRPPSPGAARSQLPE-TARRPRPRPRPALPRRAREPQPGS 272
+ E P + PP PE P P P LP P PGS
Sbjct: 967 SDPESPLAAPILETPISPP---------PEANCTDPEPVPPMILP-----PSPGS 1007
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 46.6 bits (109), Expect = 3e-05
Identities = 49/174 (28%), Positives = 64/174 (36%), Gaps = 19/174 (10%)
Query: 148 LLELPFGQAGGIPLYPRAAPAPAARPSPDPGRRPPPAAPAPVVHVGP------VLPLLHD 201
+L Q+ G+ L+ R PA P+P PPAA P H L H
Sbjct: 199 MLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHT 258
Query: 202 PVGVPLAPLGHGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPAL 261
P G G RP + + PP+P A +P TAR P R
Sbjct: 259 RALTPARGGGEGDPGPIVG-GRPENEDSLASQTSPPAPPA---PVPSTARARSPGAR--- 311
Query: 262 PRRAREPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLERPGRCKTGLWGHSAHTS 315
R ARE P +GRR + W R+A R + P C G W +H +
Sbjct: 312 -RGARELAPRAGRRRQPSGRTSWRRRARREQRDRE---PAVC--GAWPRGSHAA 359
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 45.8 bits (107), Expect = 6e-05
Identities = 39/112 (34%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 164 RAAPAPAARPSPDPGRRPPPAAPAPVVHVGPV--LPLLHDPVGVPLAPLGHGGVDWAENK 221
R AP PAA P P P PAP GP+ L P+ V L
Sbjct: 658 RPAPLPAAVVPSTPTSAPAPTQPAPTPTSGPIGLRILAQQPLSVTCFSLA---------L 708
Query: 222 ERPRRLRLRSQRFRP-PSPGAARSQLPETARRPRPRPRP-ALPRRAREPQPG 271
P + + S P PSP AR+Q P +AR P P P P A P A PG
Sbjct: 709 PSPPAVAVASPAPAPAPSPAPARAQAPASARDPAPAPAPVAGPAPASTSAPG 760
Score = 33.9 bits (76), Expect = 0.22
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 160 PLYPRAAPAPAARPSPDPGRRPPPA-----APAPVVHVGP 194
P A+PAPA PSP P R PA APAP GP
Sbjct: 712 PAVAVASPAPAPAPSPAPARAQAPASARDPAPAPAPVAGP 751
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 45.4 bits (106), Expect = 7e-05
Identities = 39/119 (32%), Positives = 45/119 (37%), Gaps = 12/119 (10%)
Query: 163 PRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKE 222
P PAPAA P PP APA P P G+P APL +
Sbjct: 761 PPPGPAPAAASPGPPPPASPPGAPA-----SPRAPRTSPYGGLPAAPLAGPALPARRLSR 815
Query: 223 RPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDTA 281
R L +PG A S P ++ PR P PA RA P P RRD+A
Sbjct: 816 ASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPA--ARAAAPSPD-----RRDSA 867
Score = 40.8 bits (94), Expect = 0.002
Identities = 49/160 (30%), Positives = 59/160 (36%), Gaps = 31/160 (19%)
Query: 163 PRAAPAPAARPSPDPG----RRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWA 218
P A PAP P P P + PPP PAP GP P H P L P A
Sbjct: 14 PGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPA-PPQHPPRAEALPP-------EA 65
Query: 219 ENKERPR-RLRLR-SQRFRPPSPGA---ARSQLPETARRPRPRPRPALPR---------- 263
++ PR RLR R S RP +PGA A+ R P+ PA P
Sbjct: 66 ADEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGPKVSF 125
Query: 264 ----RAREPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLER 299
A P PG G + P P S+ ++R
Sbjct: 126 SCRGAASGPAPGPGPAEEAGSEEAGPAGEPRGSQASFMQR 165
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 45.4 bits (106), Expect = 7e-05
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 159 IPLYPRAAPAPAARPSPDPGRRPP-----PAAPAPVVHVGPVLPLLHDPVGVPLAPLGHG 213
+P P +PAP AR P RRP P+AP P P P P + L
Sbjct: 90 LPPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQP----PAPRPESQLSDR 145
Query: 214 GVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRARE 267
W + P R + PP+ G A+++ ARR RPR AL R +
Sbjct: 146 PQSWEQKPRGPGRSARSAGAAAPPAGGLAQAR---QARRRRPRAAAALTGRTHQ 196
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 45.4 bits (106), Expect = 7e-05
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 159 IPLYPRAAPAPAARPSPDPGRRPP-----PAAPAPVVHVGPVLPLLHDPVGVPLAPLGHG 213
+P P +PAP AR P RRP P+AP P P P P + L
Sbjct: 90 LPPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQP----PAPRPESQLSDR 145
Query: 214 GVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRARE 267
W + P R + PP+ G A+++ ARR RPR AL R +
Sbjct: 146 PQSWEQKPRGPGRSARSAGAAAPPAGGLAQAR---QARRRRPRAAAALTGRTHQ 196
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 45.4 bits (106), Expect = 7e-05
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 159 IPLYPRAAPAPAARPSPDPGRRPP-----PAAPAPVVHVGPVLPLLHDPVGVPLAPLGHG 213
+P P +PAP AR P RRP P+AP P P P P + L
Sbjct: 90 LPPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQP----PAPRPESQLSDR 145
Query: 214 GVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRARE 267
W + P R + PP+ G A+++ ARR RPR AL R +
Sbjct: 146 PQSWEQRPRGPGRSARSAGAAAPPAGGLAQAR---QARRRRPRAAAALTGRTHQ 196
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 45.1 bits (105), Expect = 1e-04
Identities = 50/159 (31%), Positives = 58/159 (36%), Gaps = 17/159 (10%)
Query: 151 LPFGQAGGIPLYPRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPL--- 207
L FG P PR AP RP +PG R PP PA H G P L
Sbjct: 29 LMFGPGLRDPPPPRPAPP---RPGEEPGNRHPPP-PAARTHPGSCRARCPSPAAGGLRGP 84
Query: 208 --APLGHGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRA 265
A G D RP R R+ ++R PG+A + P P P P P R
Sbjct: 85 WTAAPGRQRADEGAAAARPERQRVWARRL----PGSAAAPAPGRDALRLPPPPPPPPERP 140
Query: 266 REPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLERPGRCK 304
R P G D+A P AP R RPG +
Sbjct: 141 RLPPAGLAGG-PADSAPPSPAPAP---RSRPAPRPGHAQ 175
Score = 31.6 bits (70), Expect = 1.1
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 252 RPRPRPRPALPRRA-----REPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLERPGRCKTG 306
R P PRPA PR R P P + R R P A RG PGR +
Sbjct: 36 RDPPPPRPAPPRPGEEPGNRHPPPPAARTHPGSCRARCPSPAAGGLRGPWTAAPGRQRAD 95
Query: 307 LWGHSAHTSHRLRISPKSESAPSCRAAVFSATQSLALPP 345
G +A R R+ + P AA +L LPP
Sbjct: 96 -EGAAAARPERQRV--WARRLPGSAAAPAPGRDALRLPP 131
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 44.3 bits (103), Expect = 2e-04
Identities = 38/111 (34%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 163 PRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPL-APLGHGGVDWAENK 221
P P A P P G +PPP P + H GP P+ P G P +P+GH G
Sbjct: 316 PHGLGHPHAGP-PGSGGQPPPRPPPGMPHPGPP-PMGMPPRGPPFGSPMGHPGPMPPHGM 373
Query: 222 ERPRRLRLRSQRFRPPSP---GAARSQLPETARRPRPRPRPALPRRAREPQ 269
P L PP P G R LP PRP P P R PQ
Sbjct: 374 RGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ 424
Score = 38.9 bits (89), Expect = 0.007
Identities = 38/115 (33%), Positives = 44/115 (38%), Gaps = 30/115 (26%)
Query: 160 PLYPRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVP--LAPLGHGGVDW 217
P P P P P P R PP +P+ H GP+ P H G P + P G+ G
Sbjct: 335 PRPPPGMPHPGPPPMGMPPRGPP--FGSPMGHPGPMPP--HGMRGPPPLMPPHGYTGPP- 389
Query: 218 AENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRA--REPQP 270
RPP G R LP PRP PRP +P R R P P
Sbjct: 390 -----------------RPPPYGYQRGPLPP----PRPTPRPPVPPRGPLRGPLP 423
Score = 38.1 bits (87), Expect = 0.012
Identities = 43/162 (26%), Positives = 55/162 (33%), Gaps = 34/162 (20%)
Query: 141 HNDAHQELL--ELPFGQAGGIPLYPRAAPAPAARPSP----------DPGRRPPPAAPAP 188
H A + LL + P QA AP P + P+P PG PP + P P
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPP 246
Query: 189 VVHVG---PVLPLLHDPVGVPLAPLGHGGVD-WAENKERPRRLRLRSQRFRP---PSPGA 241
V G P +P P +P GHG P F P P PG
Sbjct: 247 VPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGM 306
Query: 242 ARSQL---------------PETARRPRPRPRPALPRRAREP 268
++ QL P + +P PRP P +P P
Sbjct: 307 SQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPP 348
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 43.9 bits (102), Expect = 2e-04
Identities = 64/249 (25%), Positives = 86/249 (34%), Gaps = 21/249 (8%)
Query: 32 DSNTSFTPSLHFGQQSSYLQAQLPSQGSTTPGPPEQPRKKGQAGHGQGEG-MRSQQSAVL 90
DS S T S G + + P S +P P KKG AG G + S S V
Sbjct: 774 DSGASATASSK-GTLTYLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVE 832
Query: 91 RGY-PEAPVTFPAQFDVPLIEENQLSFAAAARSLPFHLLQLVDLAAASVIL--HNDAHQE 147
+ PE ++F D P + + P + L+ V L
Sbjct: 833 ASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPS---AVTPLSPKGVTLPPKETPTPS 889
Query: 148 LLELPFGQAGGIPLYPRAAPAPA-ARPSPDPGRRPP-----PAAPAPVVHVGPVLPLLHD 201
++ LPF + G P+ APA + SP R P PA+P+P P
Sbjct: 890 VVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPS 949
Query: 202 PVGVPLAPLGHGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPAL 261
P G P P WA P S + P +P + P A P P+ PA
Sbjct: 950 PKGGPATP----SPKWAPT---PPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPAT 1002
Query: 262 PRRAREPQP 270
P P P
Sbjct: 1003 PSPKGAPTP 1011
Score = 36.6 bits (83), Expect = 0.035
Identities = 34/120 (28%), Positives = 41/120 (34%), Gaps = 9/120 (7%)
Query: 152 PFGQAGGIPLYPRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLA-PL 210
P + G P+ AP P A P P + P A P P P P G P A PL
Sbjct: 994 PSPKGGPATPSPKGAPTPPAVTPPSP-KGSPAATPFPKGASTPPAATPPSPKGSPAATPL 1052
Query: 211 GHGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQP 270
G L S + P +P + P A P P+ PA P P P
Sbjct: 1053 PKGA-------PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMP 1105
Score = 36.6 bits (83), Expect = 0.035
Identities = 36/125 (28%), Positives = 44/125 (35%), Gaps = 25/125 (20%)
Query: 152 PFGQAGGIPLYPRAAPAPAAR--PSP--DPGRRPPPAAPAPVVHVGPVLPLLHDPVGVP- 206
P + G P+ AP P A PSP PG PP AP P P P G P
Sbjct: 1295 PSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPP------SPKGTPT 1348
Query: 207 ---LAPLGHGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPR 263
P GG +KE P PP+ + P P P+ PA+P
Sbjct: 1349 LPATTPSSKGGPTTPSSKEGP----------TPPAATPSHKGGP-AMTPPSPKRGPAIPS 1397
Query: 264 RAREP 268
+P
Sbjct: 1398 PKGDP 1402
Score = 32.7 bits (73), Expect = 0.50
Identities = 30/113 (26%), Positives = 36/113 (31%), Gaps = 2/113 (1%)
Query: 152 PFGQAGGIPLYPRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLG 211
P G G P P+ AP P A P P P A P GP P + P A
Sbjct: 1320 PKGSPGTPP--PKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPS 1377
Query: 212 HGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRR 264
H G R + S + P SP + P R A P +
Sbjct: 1378 HKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSK 1430
Score = 32.0 bits (71), Expect = 0.85
Identities = 43/158 (27%), Positives = 51/158 (32%), Gaps = 16/158 (10%)
Query: 163 PRAAPA-PAARP-SPD--PGRRPPPAAPAPVVHVGPVLP--LLHDP--------VGVPLA 208
P+ AP PAA P SP P PP AP P P L L P V P +
Sbjct: 1237 PKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPS 1296
Query: 209 PLGHGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREP 268
P G + P S + P +P + P P P+ P LP A P
Sbjct: 1297 PKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLP--ATTP 1354
Query: 269 QPGSGRRCRRDTAVRWPRQAPYSSRGHDLERPGRCKTG 306
G P A S +G P K G
Sbjct: 1355 SSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRG 1392
Score = 31.2 bits (69), Expect = 1.5
Identities = 37/144 (25%), Positives = 49/144 (34%), Gaps = 23/144 (15%)
Query: 151 LPFGQAGGIPLYPRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPL 210
LP + G + AP P A P P + PA P+P G +P P P +P
Sbjct: 1064 LPSPKGGPATPSLKGAPTPPAATPPSP--KGGPATPSP---KGAPMP----PAATPPSP- 1113
Query: 211 GHGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQP 270
GG+ +K P + PPSP + P P P P+ P
Sbjct: 1114 -KGGLATPPHKGAP-----TTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPP 1167
Query: 271 GSGRRCRRDTAVRWPRQAPYSSRG 294
G A P P S +G
Sbjct: 1168 PKG-------APTTPAATPPSPKG 1184
Score = 29.6 bits (65), Expect = 4.2
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 163 PRAAPAPAARPSPDPGRRP-PPAAPAPVVHVGPVLPLLHDPVGVPLAP 209
P+ P A SP P P PPA P GP P P G P +P
Sbjct: 1596 PKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPA---PKGTPTSP 1640
Score = 28.9 bits (63), Expect = 7.2
Identities = 33/128 (25%), Positives = 45/128 (35%), Gaps = 19/128 (14%)
Query: 160 PLYPRAAPAP---AARPSPDPGRRPPPAAPAPVVHVGPVLPLL--HDPVGVPLAPLGHGG 214
P P+ PAP A SP + PA PAP+ P LP + P VP P
Sbjct: 1472 PPSPKEPPAPKQVATSSSP----KKAPATPAPMG--APTLPAVIPSSPKEVPATPSSR-- 1523
Query: 215 VDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQPGSGR 274
+ P L + P + + +P P P+ PA+P P S +
Sbjct: 1524 ----RDPIAPTATLLSKKT--PATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSK 1577
Query: 275 RCRRDTAV 282
AV
Sbjct: 1578 EASSPPAV 1585
>gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 363
Score = 43.5 bits (101), Expect = 3e-04
Identities = 45/129 (34%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 164 RAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKER 223
+++P P+A P+P P RPPP+ P P L D V A G+G ++ + E
Sbjct: 73 KSSPPPSAGPTPPPSSRPPPSPPR---RRRPA--WLQDEAEVAAALAGYGFINPSSTGEG 127
Query: 224 PRR-----LRLRSQRFRPPS---PGAARSQLPE---TARRPRPRPRPALPRRAREPQPGS 272
P R LR RS F S PGA + E RRP P P P LP +R G
Sbjct: 128 PARPSTQTLR-RSGAFPCESVGVPGARPGRGAEGRPARRRPAPAP-PLLPLPSRALWLGE 185
Query: 273 GRRCRRDTA 281
RR R T+
Sbjct: 186 WRRGRLGTS 194
>gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo
sapiens]
Length = 363
Score = 43.5 bits (101), Expect = 3e-04
Identities = 45/129 (34%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 164 RAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKER 223
+++P P+A P+P P RPPP+ P P L D V A G+G ++ + E
Sbjct: 73 KSSPPPSAGPTPPPSSRPPPSPPR---RRRPA--WLQDEAEVAAALAGYGFINPSSTGEG 127
Query: 224 PRR-----LRLRSQRFRPPS---PGAARSQLPE---TARRPRPRPRPALPRRAREPQPGS 272
P R LR RS F S PGA + E RRP P P P LP +R G
Sbjct: 128 PARPSTQTLR-RSGAFPCESVGVPGARPGRGAEGRPARRRPAPAP-PLLPLPSRALWLGE 185
Query: 273 GRRCRRDTA 281
RR R T+
Sbjct: 186 WRRGRLGTS 194
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 43.1 bits (100), Expect = 4e-04
Identities = 52/153 (33%), Positives = 59/153 (38%), Gaps = 42/153 (27%)
Query: 166 APAPAARPSPDPGRRP-PPAAPAPVVHVGPVLPLLHDPVGVP-----LAPLGHGG----- 214
APA AARP P RR P P V VL H P G+P LAP G
Sbjct: 77 APA-AARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARL 135
Query: 215 ----VDWAENKERPRRL--------------------RLRSQRFRPPSPGAARSQLPETA 250
V A ER R + R S R P+PGA RS+ P
Sbjct: 136 LAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSR-PRLL 194
Query: 251 RRPRPRPRPALPRRAREP-----QPGSGRRCRR 278
R P PRPA RR+ P +PG GR R+
Sbjct: 195 RPASPPPRPAPRRRSTAPRHEGGRPGRGRTRRQ 227
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 43.1 bits (100), Expect = 4e-04
Identities = 46/134 (34%), Positives = 53/134 (39%), Gaps = 24/134 (17%)
Query: 151 LPFGQAGGIPLYPRAAPAPAARPSPDPGRRPPPA----APAPVVH-----VGPVLPLLHD 201
LP GG+PL P PA P P + PPPA PAPVVH V P P +H
Sbjct: 251 LPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHP 310
Query: 202 PV-GV-PLAPLGHGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRP 259
P GV P AP GV + P + PP+PG P P P P
Sbjct: 311 PAPGVHPPAP----GVHPPTSGVHP-----PAPGVHPPAPGV---HPPAPGVHP-PAPGV 357
Query: 260 ALPRRAREPQPGSG 273
P P P +G
Sbjct: 358 HPPAPGVHPPPSAG 371
Score = 33.5 bits (75), Expect = 0.29
Identities = 36/107 (33%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 167 PAPAARPSPDPGRRPPPAA---PAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKER 223
PAP P P PG PP PAP VH P P +H P + P GV A
Sbjct: 332 PAPGVHP-PAPGVHPPAPGVHPPAPGVH--PPAPGVHPPPSAGVHPQA-PGVHPAAPAVH 387
Query: 224 PRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQP 270
P ++ PP+PG Q P +P P P+ P PQP
Sbjct: 388 P-----QAPGVHPPAPG-MHPQAPGVHPQP-PGVHPSAP--GVHPQP 425
Score = 32.3 bits (72), Expect = 0.65
Identities = 40/120 (33%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 163 PRAAPAPAARPSPDPGRRP----PPAAPAPVVHVGPVLPLLHDPV-GV-PLAPLGHGGVD 216
P P P + P P PG P PP PAP GP P L P GV P AP+ H
Sbjct: 242 PPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGP--PQLPPPAPGVHPPAPVVHPP-- 297
Query: 217 WAENKERPRRLRLRSQRFRPPSPGA---ARSQLPETA--RRPRPRPRPALPRRAREPQPG 271
A P + PP+PG A P T+ P P P P P PG
Sbjct: 298 -ASGVHPP------APGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAP-GVHPPAPG 349
Score = 28.9 bits (63), Expect = 7.2
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 167 PAPAARPSPDPG-RRPPPAAPAPVVHVGPVLPLLHD------PVGVPLAPLGHGGVDWAE 219
PAP + P+ PG +RPPP P+++ P P L + P G+PL P+ G
Sbjct: 218 PAPPSLPAGPPGVKRPPP----PLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTG-PAPS 272
Query: 220 NKERPRRLRLRSQRFRPPSP 239
P +L + PP+P
Sbjct: 273 GPPGPPQLPPPAPGVHPPAP 292
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 43.1 bits (100), Expect = 4e-04
Identities = 37/116 (31%), Positives = 42/116 (36%), Gaps = 12/116 (10%)
Query: 160 PLYPRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAE 219
P PR APA AA +P P PPP PAPV P AP G
Sbjct: 112 PRAPRGAPAAAAAAAPPPTPAPPP-PPAPVAAAAPA-RAPRAAAAAATAPPSPGPA---- 165
Query: 220 NKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRP-----RPALPRRAREPQP 270
+ PR R PP+P A + P R P P P LP + P P
Sbjct: 166 -QPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAP 220
Score = 29.3 bits (64), Expect = 5.5
Identities = 33/119 (27%), Positives = 39/119 (32%), Gaps = 18/119 (15%)
Query: 156 AGGIPLYPRAAPAPAARPSPDPGRRPPPAAPAPVV--HVGPVLPLLHDPVGVPLA--PLG 211
A P P P PA + P R P AA A GP P PLA P
Sbjct: 124 AAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPA 183
Query: 212 HGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQP 270
PRR PP+ A LP P P+P P + ++P P
Sbjct: 184 PAAPPAVAPPAGPRRA-------PPPAVAAREPPLP-------PPPQPPAPPQQQQPPP 228
Score = 28.9 bits (63), Expect = 7.2
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 236 PPSPGAARSQLPETARRPRPRPRPALPRRAREPQPG---SGRRCRRDTAVRWPRQAP 289
PP+P P A P PR A P PG G R +R + P AP
Sbjct: 128 PPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAP 184
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 42.4 bits (98), Expect = 6e-04
Identities = 54/167 (32%), Positives = 60/167 (35%), Gaps = 55/167 (32%)
Query: 146 QELLELPFGQAGGIPLYPRA-----APAPAARPSPDPGRR----------PPPAAPAPVV 190
Q + +P G G PLYPRA A A +RP GR P AP+P
Sbjct: 4 QNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSP-- 61
Query: 191 HVGPVLPLLHDPV--------------GVPLAPLG--HGGVDWAENKERPRRLRLRSQRF 234
P LP P G P P G GGV+ A +E RSQ
Sbjct: 62 --APALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEE-------RSQPR 112
Query: 235 RPPSPGAARSQLPETARRPRPRP------RPALPRRAREPQPGSGRR 275
RP P P RRPRP P A P RE SGRR
Sbjct: 113 RPRRP-------PPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRR 152
Score = 35.8 bits (81), Expect = 0.059
Identities = 41/151 (27%), Positives = 48/151 (31%), Gaps = 44/151 (29%)
Query: 154 GQAGGI----------PLYPRAAPAPAARPSPDPGRRPPPAAPAPVV------------- 190
GQ GG+ P PR P RP P PGRR AP++
Sbjct: 95 GQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGD 154
Query: 191 ---------HVGPVLPLLHDPVGVPLAP-LGHGGVDWAENKERPRRLRLRSQRFRPPSPG 240
H V G+ P GG E + R R + QR PP+P
Sbjct: 155 RGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAP- 213
Query: 241 AARSQLPETARRPRPRPR-PALPRRAREPQP 270
PR PR PA PR E P
Sbjct: 214 ---------TYSPRSDPRDPAAPRAGPEAPP 235
Score = 33.1 bits (74), Expect = 0.38
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 235 RPPSP-GAARSQLP--ETARRPR-PRPRPALPRRAREPQPGSGRRCRRDTAVRWPRQAP 289
RPPSP G AR + R PR P P PALP RAR P+ + +R A R P + P
Sbjct: 35 RPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRE-NRKRAVPARAARGPPKRP 92
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 42.4 bits (98), Expect = 6e-04
Identities = 54/167 (32%), Positives = 60/167 (35%), Gaps = 55/167 (32%)
Query: 146 QELLELPFGQAGGIPLYPRA-----APAPAARPSPDPGRR----------PPPAAPAPVV 190
Q + +P G G PLYPRA A A +RP GR P AP+P
Sbjct: 4 QNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSP-- 61
Query: 191 HVGPVLPLLHDPV--------------GVPLAPLG--HGGVDWAENKERPRRLRLRSQRF 234
P LP P G P P G GGV+ A +E RSQ
Sbjct: 62 --APALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEE-------RSQPR 112
Query: 235 RPPSPGAARSQLPETARRPRPRP------RPALPRRAREPQPGSGRR 275
RP P P RRPRP P A P RE SGRR
Sbjct: 113 RPRRP-------PPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRR 152
Score = 35.8 bits (81), Expect = 0.059
Identities = 41/151 (27%), Positives = 48/151 (31%), Gaps = 44/151 (29%)
Query: 154 GQAGGI----------PLYPRAAPAPAARPSPDPGRRPPPAAPAPVV------------- 190
GQ GG+ P PR P RP P PGRR AP++
Sbjct: 95 GQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGD 154
Query: 191 ---------HVGPVLPLLHDPVGVPLAP-LGHGGVDWAENKERPRRLRLRSQRFRPPSPG 240
H V G+ P GG E + R R + QR PP+P
Sbjct: 155 RGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAP- 213
Query: 241 AARSQLPETARRPRPRPR-PALPRRAREPQP 270
PR PR PA PR E P
Sbjct: 214 ---------TYSPRSDPRDPAAPRAGPEAPP 235
Score = 33.1 bits (74), Expect = 0.38
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 235 RPPSP-GAARSQLP--ETARRPR-PRPRPALPRRAREPQPGSGRRCRRDTAVRWPRQAP 289
RPPSP G AR + R PR P P PALP RAR P+ + +R A R P + P
Sbjct: 35 RPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRE-NRKRAVPARAARGPPKRP 92
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 42.4 bits (98), Expect = 6e-04
Identities = 54/202 (26%), Positives = 69/202 (34%), Gaps = 43/202 (21%)
Query: 163 PRAAPAPAARP-SPDPGRRPPPA---APAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWA 218
PRA P +RP + G R PPA +P PV G PLG G+ +
Sbjct: 75 PRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRP------GPLGQKGLRIS 128
Query: 219 ENK--------ERPRRLRLRSQRFRP--------PSPGAARSQ--------LPETARRPR 254
+ E P+R L + R PSP AR LP A R
Sbjct: 129 AEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSAR 188
Query: 255 PRPRPALPRRA---------REPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLERPGRCKT 305
PRP PR++ EP P + RR ++ P SS L P R
Sbjct: 189 PRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGP 248
Query: 306 GLWGHSAHTSHRLRISPKSESA 327
G +H + PK A
Sbjct: 249 SARGTPRAPAHPSQPKPKGLQA 270
Score = 38.1 bits (87), Expect = 0.012
Identities = 47/177 (26%), Positives = 59/177 (33%), Gaps = 18/177 (10%)
Query: 149 LELPFGQAGGIPLYPRAAPAPAARPS----PDPGRRPPPAAPAPVVHVGPVLPLLHDPVG 204
L++P P+ P A P P A P P +PPP AP P + P+ L P
Sbjct: 440 LQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAP-PALATPPLQALPSPPAS 498
Query: 205 VPLAPLGHGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPAL--P 262
P G ++ + P PP A Q+P P P P L P
Sbjct: 499 FP------GQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVP-----PSPPASPTLQAP 547
Query: 263 RRAREPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLERPGRCKTGLWGHSAHTSHRLR 319
RR P P + R T P P SR G G + T LR
Sbjct: 548 RRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELR 604
Score = 37.7 bits (86), Expect = 0.016
Identities = 67/274 (24%), Positives = 82/274 (29%), Gaps = 61/274 (22%)
Query: 55 PSQGSTTPGPPEQPRKKGQAGHGQGEGMRSQQSAVLRGYPEAPVTFPAQFDVPLIEENQL 114
P T P PP P QA G + L P +P+ P P + L
Sbjct: 309 PPSLQTLPSPPATP--PSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPL 366
Query: 115 SFAAAARSLPFHLLQLVDLAAASVILHNDAHQELLELPFGQA------------GGIPLY 162
+ + P L LA S N LL+ PF P+
Sbjct: 367 QAPPSPPASP----PLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVS 422
Query: 163 PRAAP-----------------APAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGV 205
P A P +P A P P PPP AP P+ P L L P
Sbjct: 423 PSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPL--AAPPLQLAKPPPQA 480
Query: 206 PLA----PLG---------HGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARR 252
P A PL G ++ + P PP A Q+P
Sbjct: 481 PPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVP----- 535
Query: 253 PRPRPRPALPRRAREPQPGSGRRCRRDTAVRWPR 286
P P P L R P PG DT+V PR
Sbjct: 536 PSPPASPTLQAPRRPPTPGP------DTSVSGPR 563
Score = 30.8 bits (68), Expect = 1.9
Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 15/114 (13%)
Query: 165 AAPAPAAR------PSPDPG--RRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVD 216
AA PAAR P P PG R PPP PA + +G + P+ +G +
Sbjct: 13 AARTPAARAPGLLTPRP-PGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIP 71
Query: 217 WAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQP 270
+ + P R RPP+ G P P P P P P
Sbjct: 72 ESAPRAGPTRTS------RPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGP 119
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 42.4 bits (98), Expect = 6e-04
Identities = 54/167 (32%), Positives = 60/167 (35%), Gaps = 55/167 (32%)
Query: 146 QELLELPFGQAGGIPLYPRA-----APAPAARPSPDPGRR----------PPPAAPAPVV 190
Q + +P G G PLYPRA A A +RP GR P AP+P
Sbjct: 4 QNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSP-- 61
Query: 191 HVGPVLPLLHDPV--------------GVPLAPLG--HGGVDWAENKERPRRLRLRSQRF 234
P LP P G P P G GGV+ A +E RSQ
Sbjct: 62 --APALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEE-------RSQPR 112
Query: 235 RPPSPGAARSQLPETARRPRPRP------RPALPRRAREPQPGSGRR 275
RP P P RRPRP P A P RE SGRR
Sbjct: 113 RPRRP-------PPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRR 152
Score = 35.8 bits (81), Expect = 0.059
Identities = 41/151 (27%), Positives = 48/151 (31%), Gaps = 44/151 (29%)
Query: 154 GQAGGI----------PLYPRAAPAPAARPSPDPGRRPPPAAPAPVV------------- 190
GQ GG+ P PR P RP P PGRR AP++
Sbjct: 95 GQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGD 154
Query: 191 ---------HVGPVLPLLHDPVGVPLAP-LGHGGVDWAENKERPRRLRLRSQRFRPPSPG 240
H V G+ P GG E + R R + QR PP+P
Sbjct: 155 RGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAP- 213
Query: 241 AARSQLPETARRPRPRPR-PALPRRAREPQP 270
PR PR PA PR E P
Sbjct: 214 ---------TYSPRSDPRDPAAPRAGPEAPP 235
Score = 33.1 bits (74), Expect = 0.38
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 235 RPPSP-GAARSQLP--ETARRPR-PRPRPALPRRAREPQPGSGRRCRRDTAVRWPRQAP 289
RPPSP G AR + R PR P P PALP RAR P+ + +R A R P + P
Sbjct: 35 RPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRE-NRKRAVPARAARGPPKRP 92
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 42.4 bits (98), Expect = 6e-04
Identities = 60/190 (31%), Positives = 70/190 (36%), Gaps = 39/190 (20%)
Query: 154 GQAGGIPLYPRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHG 213
G GG P + P + PSP + AAP P G P P P + G G
Sbjct: 322 GAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPAR-GKESP---SPRSAP-SSQGRG 376
Query: 214 G--VDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPR-------R 264
G A + R RR R RS RS RR R RPRPA PR R
Sbjct: 377 GRAAGGAGRRRRRRRRRRRS-----------RSSASAPRRRGRRRPRPAPPRGSSRSLSR 425
Query: 265 AR-EPQPGSGRRCRRDTAVRWPRQAPYSSRGHD------LERPGRCKTGLWGHSAHTSHR 317
AR GSGR P P S RGH ERP R + S +H
Sbjct: 426 ARSSSDSGSGR------GAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSP-GAHG 478
Query: 318 LRISPKSESA 327
R P+ +S+
Sbjct: 479 RRGGPEGKSS 488
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 42.4 bits (98), Expect = 6e-04
Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 32/165 (19%)
Query: 163 PRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVD---WAE 219
P+++ + ++ PSP P + A+ +P P P AP H + ++
Sbjct: 413 PQSSSSESSPPSPQPTKVSRHASSSP-----------ESPKPAP-APGSHREISSSPTSK 460
Query: 220 NKERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPR---RAREPQPGSGRRC 276
N+ R R +S PS RS+ P TA+R R R R R R+R PQ RR
Sbjct: 461 NRSHGRAKRDKSHS-HTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQ---WRRS 516
Query: 277 RRDTAVRWPRQAPYSSRGHDL--ERPGRCKTGLWGHSAHTSHRLR 319
R +A RW R RG +RPG W S +T R R
Sbjct: 517 R--SAQRWGRSRSPQRRGRSRSPQRPG------WSRSRNTQRRGR 553
Score = 34.7 bits (78), Expect = 0.13
Identities = 38/127 (29%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Query: 228 RLRSQRFRPP-SPGAARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDTAVRWPR 286
R RS+ PP + +RS+ P T RR R R P RR+R P RR R R
Sbjct: 1920 RRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITR 1979
Query: 287 QAPYSSRGHDLERPGRCKTG---LWGHSAHTSHRLRISPKSESAPSCRAAVFSATQSLAL 343
+ S R R +T + TS R +S + P+ R S T L
Sbjct: 1980 RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPR 2039
Query: 344 PPSRHLS 350
SR S
Sbjct: 2040 KRSRSRS 2046
Score = 34.7 bits (78), Expect = 0.13
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 4/134 (2%)
Query: 218 AENKERPRRLRLRSQRFRPPSPGAARSQL-PETARRPRPRPRPALPRRAREPQPGSGRRC 276
+ ++ P R R P + +RS+ P T RR R R P RR+R P + RR
Sbjct: 1970 SRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRR 2029
Query: 277 RRDTAVRWPRQAPYSSRGHDLERPGRCKTGLWGHSAHTSHRLRISPKSESAPSCRAAVFS 336
R PR+ S + R R +T +A L SP + S +
Sbjct: 2030 SRSRTPLLPRKRSRSRSPLAIRRRSRSRT---PRTARGKRSLTRSPPAIRRRSASGSSSD 2086
Query: 337 ATQSLALPPSRHLS 350
++S P +R+ S
Sbjct: 2087 RSRSATPPATRNHS 2100
Score = 33.9 bits (76), Expect = 0.22
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 163 PRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPL-APLGHGGVDWAENK 221
P+A P PA+ P PG R + P+ + L + PV +P + +
Sbjct: 2656 PQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSS 2715
Query: 222 ERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREP 268
ER R R QR SP R RR P PRP R +R P
Sbjct: 2716 ERGSR---RGQRGDSRSPSHKR-------RRETPSPRPMRHRSSRSP 2752
Score = 33.5 bits (75), Expect = 0.29
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 217 WAENKERPRRLRLRSQRF------RPPSPGAARSQLPETARRPRPRPRPALPRRAREPQP 270
W+ ++ RR R RS R P + G +RS+ P ARR R R R RR+R P
Sbjct: 542 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTP--ARRGRSRSRTPARRRSRSRTP 599
Query: 271 GSGRRCRRDTAVR 283
+ RR R T R
Sbjct: 600 -TRRRSRSRTPAR 611
Score = 33.1 bits (74), Expect = 0.38
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 221 KERPRRLRLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDT 280
+ R R R R R P+ +RS+ P ARR R R R RR+R P RR +
Sbjct: 583 RSRSRTPARRRSRSRTPTRRRSRSRTP--ARRGRSRSRTPARRRSRTRSP-----VRRRS 635
Query: 281 AVRWPRQAPYSSRGHDLERPGRCKT 305
R P + SR R GR ++
Sbjct: 636 RSRSPARRSGRSRSRTPARRGRSRS 660
Score = 28.5 bits (62), Expect = 9.4
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 218 AENKERPRRLRLRSQRFRPPSP-GAARSQLPETARRPRPRPRPALPRRAREPQPGSGRRC 276
A + R R R R R P+ G +RS+ P RR R R R+R P SGR
Sbjct: 590 ARRRSRSRTPTRRRSRSRTPARRGRSRSRTP-ARRRSRTRSPVRRRSRSRSPARRSGRSR 648
Query: 277 RRDTAVRW-PRQAPYSSRGHDLERPGRCKTG 306
R A R R + RG R ++G
Sbjct: 649 SRTPARRGRSRSRTPARRGRSRSRTPARRSG 679
Score = 28.5 bits (62), Expect = 9.4
Identities = 43/142 (30%), Positives = 49/142 (34%), Gaps = 20/142 (14%)
Query: 163 PRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKE 222
PRA P + S GR P P + P P A G + K
Sbjct: 1629 PRALPRRSRSGSSSKGRGPSPEGSSST-ESSP-----EHPPKSRTARRGSRSSPEPKTKS 1682
Query: 223 R--PRRLRLRSQRFRPPSPGAAR--------SQLPETARRPRPRPRPALPRRAREPQPGS 272
R PRR RS R P AR S PET R PR R + + EP S
Sbjct: 1683 RTPPRR---RSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKS 1739
Query: 273 GRRCRRDTAVRWPRQAPYSSRG 294
R RR + PR S RG
Sbjct: 1740 -RSSRRRRSASSPRTKTTSRRG 1760
>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
Length = 1349
Score = 42.4 bits (98), Expect = 6e-04
Identities = 45/161 (27%), Positives = 57/161 (35%), Gaps = 52/161 (32%)
Query: 147 ELLELPFGQAGGIPLYPRAAPAPAARPS------------PDPGRRPPPAAPAPVVHVGP 194
E L+ G G+P P + PAA P PGR P PA PA P
Sbjct: 1068 ESLQPKAGLPRGLP--PTSLQVPAAYPGILSLEAPKGWAGKSPGRGPVPAPPAAKWQDRP 1125
Query: 195 VLPLLHD---------------PVGVPLAPLGHGG-------VDWAENKERPRRLRLRSQ 232
+ PL+ P P P HGG W E + RPR +++
Sbjct: 1126 MQPLVSQGQLRHTSQGMGIPVLPYPEPAEPGAHGGPSTFGLDTRWYEPQPRPRPSPRQAR 1185
Query: 233 RFRP----------------PSPGAARSQLPETARRPRPRP 257
R P SP ++R+ PE A R RPRP
Sbjct: 1186 RAEPSLHQVVLQPSRLSPLTQSPLSSRTGSPELAARARPRP 1226
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 42.0 bits (97), Expect = 8e-04
Identities = 34/117 (29%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 163 PRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLH----DPVGVPLAPLGHGGVDWA 218
P+ PA P P P PPP PAP P PLL +P+ P L G A
Sbjct: 14 PQDGEQPAESPEPPPPWPPPPPPPAP----PPAPPLLSEASPEPIPEPCPELAPGPCPEA 69
Query: 219 ENKERPRRL-----RLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQP 270
++ ++ P+P A PE A P P P P P P+P
Sbjct: 70 TSESATELYTEPTPEPATEPASEPAPEPATEPAPEPATEPAPEPAPE-PATESAPEP 125
Score = 30.0 bits (66), Expect = 3.2
Identities = 31/113 (27%), Positives = 38/113 (33%), Gaps = 28/113 (24%)
Query: 163 PRAAPAPAARPSPDPGRRP-----PPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDW 217
P AP PA +P+P P P AP V P L +P P+ L
Sbjct: 111 PEPAPEPATESAPEPTPEPALESVPEPAPELTPEVAP--ELAPEPTPEPVTELA------ 162
Query: 218 AENKERPRRLRLRSQRFRPPSPGAARSQLP--------ETARRPRPRPRPALP 262
P + FR PSP Q P +T+ P P P P P
Sbjct: 163 ------PEFCPEAAPEFR-PSPAPCLLQCPVDTRERGLKTSPSPSPSPSPRTP 208
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 41.6 bits (96), Expect = 0.001
Identities = 31/74 (41%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 161 LYPRAAPAPAARPSPDP-GRRPPPAAPAPVVHVGPVLPLLHDPV----GVPLA-PLGHGG 214
L PR APA A PSP P RP P P + GP P+L PLA PL G
Sbjct: 100 LQPRGAPAVPAAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGS 159
Query: 215 VDWAENKERPRRLR 228
V E ++RPR R
Sbjct: 160 VTAREQEQRPRSRR 173
Score = 37.7 bits (86), Expect = 0.016
Identities = 45/143 (31%), Positives = 53/143 (37%), Gaps = 19/143 (13%)
Query: 167 PAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPRR 226
PAPAA P P RP A A + + P P P G GG D A P
Sbjct: 50 PAPAAAHPPAPRERP---AAARLSALAAAQPRRRSP-----GPQGGGGGDIAS--PLPPA 99
Query: 227 LRLRSQRFRP--PSPGAARSQLPETARRPRPRPRPALPRRAREP-QPGSGRRCRRDTAVR 283
L+ R P PSPG P AR P PRP+LP P P S R R
Sbjct: 100 LQPRGAPAVPAAPSPG------PLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLAR 153
Query: 284 WPRQAPYSSRGHDLERPGRCKTG 306
Q ++R + R + G
Sbjct: 154 PLPQGSVTAREQEQRPRSRRRAG 176
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 41.6 bits (96), Expect = 0.001
Identities = 31/74 (41%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 161 LYPRAAPAPAARPSPDP-GRRPPPAAPAPVVHVGPVLPLLHDPV----GVPLA-PLGHGG 214
L PR APA A PSP P RP P P + GP P+L PLA PL G
Sbjct: 100 LQPRGAPAVPAAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGS 159
Query: 215 VDWAENKERPRRLR 228
V E ++RPR R
Sbjct: 160 VTAREQEQRPRSRR 173
Score = 37.7 bits (86), Expect = 0.016
Identities = 45/143 (31%), Positives = 53/143 (37%), Gaps = 19/143 (13%)
Query: 167 PAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPRR 226
PAPAA P P RP A A + + P P P G GG D A P
Sbjct: 50 PAPAAAHPPAPRERP---AAARLSALAAAQPRRRSP-----GPQGGGGGDIAS--PLPPA 99
Query: 227 LRLRSQRFRP--PSPGAARSQLPETARRPRPRPRPALPRRAREP-QPGSGRRCRRDTAVR 283
L+ R P PSPG P AR P PRP+LP P P S R R
Sbjct: 100 LQPRGAPAVPAAPSPG------PLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLAR 153
Query: 284 WPRQAPYSSRGHDLERPGRCKTG 306
Q ++R + R + G
Sbjct: 154 PLPQGSVTAREQEQRPRSRRRAG 176
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 41.2 bits (95), Expect = 0.001
Identities = 51/188 (27%), Positives = 67/188 (35%), Gaps = 49/188 (26%)
Query: 150 ELPFGQAGGIPLYPRAAPAPAARPSPDPGR-----------------------RPPP--- 183
E P + G + P A P P A PSP P R RPPP
Sbjct: 1123 EAPTPKEGTLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPPQVC 1182
Query: 184 ---AAPAPVV-----HVGPV----LPLLHDPVGVPLAPLGHGGVDWA-----ENKERPRR 226
+ PA + GP+ PL + PL+P+ GG + E+ ERPRR
Sbjct: 1183 PGWSPPAKSLAPKKPPTGPLPPSKEPLKEKLIPGPLSPVARGGSNGGSNVGMEDGERPRR 1242
Query: 227 LR--LRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDTAVRW 284
R Q+ +PP + + AR +P LP A PG T
Sbjct: 1243 RRHGRAQQQDKPPRFRRLKQERENAARGSEGKPSLTLPASA----PGPEEALTTVTVAPA 1298
Query: 285 PRQAPYSS 292
PR+A S
Sbjct: 1299 PRRAAAKS 1306
Score = 34.7 bits (78), Expect = 0.13
Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 20/132 (15%)
Query: 163 PRAAPAPAARPSPDPGRR---PPPAAPAPVVHVGPVLPLLHDPVGVPLA--PLGHGG--- 214
P +P A D G R PP P P + P P P G P++ PL G
Sbjct: 805 PLTSPLRQAADEDDKGMRSETPPVPPPPPYLASYPGFPENGAP-GPPISRFPLEEPGPRP 863
Query: 215 VDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARRPR----------PRPRPALPRR 264
+ W + +++ + PP A+ PE R+P P PR
Sbjct: 864 LPWPPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTE 923
Query: 265 AR-EPQPGSGRR 275
R P+PGS RR
Sbjct: 924 TRWGPRPGSSRR 935
Score = 33.5 bits (75), Expect = 0.29
Identities = 75/290 (25%), Positives = 99/290 (34%), Gaps = 73/290 (25%)
Query: 38 TPSLH-FGQQSSYLQAQLPSQGSTTPGP-PEQPRKKGQAGHGQGEGMRSQQSAVLRGYPE 95
TPSLH + Q YL PGP P G A GQ + Q+ L P
Sbjct: 1868 TPSLHPYRSQPLYLP----------PGPAPPSALLSGLALKGQFLDFSTMQATELGKLPA 1917
Query: 96 APVTFP--------AQFDVPLIEENQLSFAAAARSLP----FHLLQLVDLAAASVILHND 143
V +P A PL + + L + LP F+ L + +
Sbjct: 1918 GGVLYPPPSFLYSPAFCPSPLPDTSLLQ---VRQDLPSPSDFYSTPLQPGGQSGFLPSGA 1974
Query: 144 AHQELL------ELPFGQAGGIPLYPRAAPAP---------------AARPSPDPGRR-- 180
Q++L +LP G +P P AP P A RP P P R
Sbjct: 1975 PAQQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVL 2034
Query: 181 PPPAAPAPV------VHVGPVLPL---------LHDPVGVPLAPLGHG--GVDWAENKER 223
P PA P P +H + P L P P G G++ + K
Sbjct: 2035 PSPARPFPASLGRAELHPVELKPFQDYQKLSSNLGGPGSSRTPPTGRSFSGLN-SRLKAT 2093
Query: 224 PRRLR--LRSQR---FRPPSPGAARSQLPETARRPRPRPRPALPRRAREP 268
P R+QR ++ SP A +P+ R P PR RRA EP
Sbjct: 2094 PSTYSGVFRTQRVDLYQQASPPDALRWIPKPWERTGPPPREGPSRRAEEP 2143
Score = 30.4 bits (67), Expect = 2.5
Identities = 58/202 (28%), Positives = 76/202 (37%), Gaps = 36/202 (17%)
Query: 147 ELLELPFGQAGGIPLYPRAA--PAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVG 204
EL +LP AGG+ LYP + +PA PSP P ++ V LP D
Sbjct: 1911 ELGKLP---AGGV-LYPPPSFLYSPAFCPSPLPD--------TSLLQVRQDLPSPSDFYS 1958
Query: 205 VPLAPLGHGGVDWAENKERPRRLRLRSQRF-------RPPSPGAARSQL----------- 246
PL P G G + + L + + PP+P A L
Sbjct: 1959 TPLQPGGQSGFLPSGAPAQQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQP 2018
Query: 247 PETARRPRPRPRP-ALPRRAREPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLERPGRCKT 305
P A RP P P LP AR P P S R P Q Y +L PG +T
Sbjct: 2019 PSLAVRPPPAPATRVLPSPAR-PFPASLGRAELHPVELKPFQ-DYQKLSSNLGGPGSSRT 2076
Query: 306 GLWGHS-AHTSHRLRISPKSES 326
G S + + RL+ +P + S
Sbjct: 2077 PPTGRSFSGLNSRLKATPSTYS 2098
Score = 29.6 bits (65), Expect = 4.2
Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 13/87 (14%)
Query: 211 GHGGVDWAENKERPRRL---RLRSQRFRPPSPGAARSQLPETARRPRPRPRPALPRRARE 267
GH A +ERP + S PP+P A + ET+R P P P P+
Sbjct: 357 GHRDSQSASGEERPPEADGKKGNSPNSEPPTPKTAWA---ETSRPPETEPGPPAPKPPLP 413
Query: 268 PQPGSGRRCRRDTAVRWPRQAPYSSRG 294
P R A W Y RG
Sbjct: 414 PP-------HRGPAGNWGPPGDYPDRG 433
Score = 29.3 bits (64), Expect = 5.5
Identities = 32/113 (28%), Positives = 35/113 (30%), Gaps = 35/113 (30%)
Query: 154 GQAGGIPLYPRAAPAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHG 213
G A G P P + A P P PP P P H G
Sbjct: 1678 GAAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAPHDG-------------------- 1717
Query: 214 GVDWAENKERPRRLRLRSQRFRPPSP-GAARSQLPETARRP---RPRPRPALP 262
+ KE PR L PP P G RSQ + P RP RP P
Sbjct: 1718 -----DRKELPREQPL------PPGPIGTERSQRTDRGTEPGPIRPSHRPGPP 1759
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,673,468
Number of Sequences: 37866
Number of extensions: 1247844
Number of successful extensions: 17420
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 971
Number of HSP's that attempted gapping in prelim test: 11534
Number of HSP's gapped (non-prelim): 5101
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.