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Search of human proteins with 239741388
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741388 PREDICTED: hypothetical protein XP_002342191 [Homo
sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752953 PREDICTED: hypothetical protein [Homo sapiens] 371 e-103
gi|239747510 PREDICTED: hypothetical protein [Homo sapiens] 371 e-103
gi|239741388 PREDICTED: hypothetical protein XP_002342191 [Homo ... 371 e-103
gi|239753541 PREDICTED: hypothetical protein XP_002345692 [Homo ... 33 0.17
gi|239748121 PREDICTED: hypothetical protein XP_002346534 [Homo ... 33 0.17
gi|239742020 PREDICTED: hypothetical protein XP_002342373 [Homo ... 33 0.17
gi|34101286 zinc finger RNA binding protein [Homo sapiens] 32 0.23
gi|239757230 PREDICTED: hypothetical protein [Homo sapiens] 31 0.66
gi|239751738 PREDICTED: hypothetical protein [Homo sapiens] 31 0.66
gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo ... 31 0.66
gi|239750710 PREDICTED: hypothetical protein [Homo sapiens] 30 0.86
gi|239745016 PREDICTED: hypothetical protein XP_002343331 [Homo ... 30 0.86
gi|82546824 forkhead box K1 [Homo sapiens] 30 1.1
gi|33186901 hypothetical protein LOC359845 [Homo sapiens] 30 1.1
gi|15029506 homeobox D8 [Homo sapiens] 30 1.5
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|208431824 forkhead box I3 [Homo sapiens] 30 1.5
gi|116174748 developing brain homeobox 2 [Homo sapiens] 30 1.5
gi|225543407 BTB domain protein BDPL [Homo sapiens] 29 1.9
gi|28558973 mediator complex subunit 14 [Homo sapiens] 29 1.9
gi|239752827 PREDICTED: hypothetical protein [Homo sapiens] 28 3.3
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 28 3.3
gi|239747386 PREDICTED: hypothetical protein XP_002346570 [Homo ... 28 3.3
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 28 3.3
gi|239741211 PREDICTED: hypothetical protein XP_002342098 [Homo ... 28 3.3
gi|169201831 PREDICTED: hypothetical protein [Homo sapiens] 28 4.3
gi|113421750 PREDICTED: hypothetical protein [Homo sapiens] 28 4.3
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 28 4.3
gi|145699139 cartilage intermediate layer protein 2 [Homo sapiens] 28 4.3
gi|149944524 hypothetical protein LOC400591 [Homo sapiens] 28 4.3
>gi|239752953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 371 bits (952), Expect = e-103
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MRVGLKDEKNRSRRITRGYCTRPGTQLTLLNRQQRHRKADKKLDTRNKVGRTSKGSYFLG 60
MRVGLKDEKNRSRRITRGYCTRPGTQLTLLNRQQRHRKADKKLDTRNKVGRTSKGSYFLG
Sbjct: 1 MRVGLKDEKNRSRRITRGYCTRPGTQLTLLNRQQRHRKADKKLDTRNKVGRTSKGSYFLG 60
Query: 61 AEGKWTSQEKSSILTDTVVSAPSGWKLQETEVNPPVVLVDLNLQVSFPCVPFATKISFGV 120
AEGKWTSQEKSSILTDTVVSAPSGWKLQETEVNPPVVLVDLNLQVSFPCVPFATKISFGV
Sbjct: 61 AEGKWTSQEKSSILTDTVVSAPSGWKLQETEVNPPVVLVDLNLQVSFPCVPFATKISFGV 120
Query: 121 YTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPGPR 180
YTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPGPR
Sbjct: 121 YTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPGPR 180
>gi|239747510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 371 bits (952), Expect = e-103
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MRVGLKDEKNRSRRITRGYCTRPGTQLTLLNRQQRHRKADKKLDTRNKVGRTSKGSYFLG 60
MRVGLKDEKNRSRRITRGYCTRPGTQLTLLNRQQRHRKADKKLDTRNKVGRTSKGSYFLG
Sbjct: 1 MRVGLKDEKNRSRRITRGYCTRPGTQLTLLNRQQRHRKADKKLDTRNKVGRTSKGSYFLG 60
Query: 61 AEGKWTSQEKSSILTDTVVSAPSGWKLQETEVNPPVVLVDLNLQVSFPCVPFATKISFGV 120
AEGKWTSQEKSSILTDTVVSAPSGWKLQETEVNPPVVLVDLNLQVSFPCVPFATKISFGV
Sbjct: 61 AEGKWTSQEKSSILTDTVVSAPSGWKLQETEVNPPVVLVDLNLQVSFPCVPFATKISFGV 120
Query: 121 YTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPGPR 180
YTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPGPR
Sbjct: 121 YTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPGPR 180
>gi|239741388 PREDICTED: hypothetical protein XP_002342191 [Homo
sapiens]
Length = 180
Score = 371 bits (952), Expect = e-103
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MRVGLKDEKNRSRRITRGYCTRPGTQLTLLNRQQRHRKADKKLDTRNKVGRTSKGSYFLG 60
MRVGLKDEKNRSRRITRGYCTRPGTQLTLLNRQQRHRKADKKLDTRNKVGRTSKGSYFLG
Sbjct: 1 MRVGLKDEKNRSRRITRGYCTRPGTQLTLLNRQQRHRKADKKLDTRNKVGRTSKGSYFLG 60
Query: 61 AEGKWTSQEKSSILTDTVVSAPSGWKLQETEVNPPVVLVDLNLQVSFPCVPFATKISFGV 120
AEGKWTSQEKSSILTDTVVSAPSGWKLQETEVNPPVVLVDLNLQVSFPCVPFATKISFGV
Sbjct: 61 AEGKWTSQEKSSILTDTVVSAPSGWKLQETEVNPPVVLVDLNLQVSFPCVPFATKISFGV 120
Query: 121 YTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPGPR 180
YTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPGPR
Sbjct: 121 YTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPGPR 180
>gi|239753541 PREDICTED: hypothetical protein XP_002345692 [Homo
sapiens]
Length = 202
Score = 32.7 bits (73), Expect = 0.17
Identities = 23/46 (50%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 137 RQHRPQPAPA-VWGCNHRPGSG-GRCHRPATAVAAAAAAS-LSPGP 179
R HRP PA W C RP PAT VAAAAA S SP P
Sbjct: 106 RGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAP 151
>gi|239748121 PREDICTED: hypothetical protein XP_002346534 [Homo
sapiens]
Length = 202
Score = 32.7 bits (73), Expect = 0.17
Identities = 23/46 (50%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 137 RQHRPQPAPA-VWGCNHRPGSG-GRCHRPATAVAAAAAAS-LSPGP 179
R HRP PA W C RP PAT VAAAAA S SP P
Sbjct: 106 RGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAP 151
>gi|239742020 PREDICTED: hypothetical protein XP_002342373 [Homo
sapiens]
Length = 202
Score = 32.7 bits (73), Expect = 0.17
Identities = 23/46 (50%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 137 RQHRPQPAPA-VWGCNHRPGSG-GRCHRPATAVAAAAAAS-LSPGP 179
R HRP PA W C RP PAT VAAAAA S SP P
Sbjct: 106 RGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAP 151
>gi|34101286 zinc finger RNA binding protein [Homo sapiens]
Length = 1074
Score = 32.3 bits (72), Expect = 0.23
Identities = 41/161 (25%), Positives = 58/161 (36%), Gaps = 22/161 (13%)
Query: 40 DKKLDTRNKVGRTSKGSYFLGAEGKWTSQEKS--------SILTDTVVSAPSGWKLQETE 91
D K+ T N G T G+ A +++ Q S ++ + TV AP
Sbjct: 20 DAKMATGNYFGFTHSGAAAAAAAAQYSQQPASGVAYSHPTTVASYTVHQAPVAAHTVTAA 79
Query: 92 VNPPVVLVDLNLQVSFPCVPFATKISFGVYTSKADTPAVIEPKRRRQHRPQPAPAVWGCN 151
P V + AT ++G Y + A T +R+Q P P P N
Sbjct: 80 YAPAAATVAVARPAPVAVAAAATAAAYGGYPT-AHTATDYGYTQRQQEAPPPPPPATTQN 138
Query: 152 HRPG-SGGRCHRPA------------TAVAAAAAASLSPGP 179
++ S R PA TA AAA AA+ P P
Sbjct: 139 YQDSYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQP 179
>gi|239757230 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 30.8 bits (68), Expect = 0.66
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 128 PAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAAS---LSPGPR 180
P + +R R RP+P A + R G +PA + +AAAA+ SPGPR
Sbjct: 24 PGGLHSERPRAVRPEPTQASQPASQR--GGATVTKPAASARSAAAATGFPCSPGPR 77
>gi|239751738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 30.8 bits (68), Expect = 0.66
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 128 PAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAAS---LSPGPR 180
P + +R R RP+P A + R G +PA + +AAAA+ SPGPR
Sbjct: 24 PGGLHSERPRAVRPEPTQASQPASQR--GGATVTKPAASARSAAAATGFPCSPGPR 77
>gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo
sapiens]
Length = 144
Score = 30.8 bits (68), Expect = 0.66
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 128 PAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAAS---LSPGPR 180
P + +R R RP+P A + R G +PA + +AAAA+ SPGPR
Sbjct: 24 PGGLHSERPRAVRPEPTQASQPASQR--GGATVTKPAASARSAAAATGFPCSPGPR 77
>gi|239750710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 317
Score = 30.4 bits (67), Expect = 0.86
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 74 LTDTVVSAPSGWKLQETEVNPPVVLVDLNLQVSFPCVPFATKISFGVYTSKADTPAVIEP 133
L D S W LQ P L L+ + PF +G+ K P V+ P
Sbjct: 86 LPDFTTPQASAWPLQAASEEPLYYLQTLSSSQN----PF-----WGLQAGKHSAPEVLWP 136
Query: 134 KRRRQHRPQPAPAVWGCNHRPGSGGR 159
K R R + +V + RPGS R
Sbjct: 137 KASRSKRTRRRASVAVISGRPGSRSR 162
>gi|239745016 PREDICTED: hypothetical protein XP_002343331 [Homo
sapiens]
Length = 317
Score = 30.4 bits (67), Expect = 0.86
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 74 LTDTVVSAPSGWKLQETEVNPPVVLVDLNLQVSFPCVPFATKISFGVYTSKADTPAVIEP 133
L D S W LQ P L L+ + PF +G+ K P V+ P
Sbjct: 86 LPDFTTPQASAWPLQAASEEPLYYLQTLSSSQN----PF-----WGLQAGKHSAPEVLWP 136
Query: 134 KRRRQHRPQPAPAVWGCNHRPGSGGR 159
K R R + +V + RPGS R
Sbjct: 137 KASRSKRTRRRASVAVISGRPGSRSR 162
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 30.0 bits (66), Expect = 1.1
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 106 SFPCVP-FATKISFGVYTSKADTPAVIEPKRRRQHRPQPAP-----AVWGCNHRPGSGGR 159
S PC P + + + A PA +P+ P P P A+ G GS G
Sbjct: 18 SAPCSPVLCAAAAAAAFPAAAPPPAPAQPQPPPGPPPPPPPPLPPGAIAGAGSSGGSSGV 77
Query: 160 CH-------RPATAVAAAAAASLSPGP 179
PA AAAA+ SPGP
Sbjct: 78 SGDSAVAGAAPALVAAAAASVRQSPGP 104
>gi|33186901 hypothetical protein LOC359845 [Homo sapiens]
Length = 214
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 123 SKADTPAVIEPKRRRQH---------RPQPAPAVWGCNHRPGSGGRCHRPATAVA-AAAA 172
S D P +++ K++ P P+P+ WG G G R P T AAAA
Sbjct: 6 SLQDVPELVDAKKKGDGVLDSPDSGLPPSPSPSHWGLAAGGGGGERAAAPGTLEPDAAAA 65
Query: 173 ASLSPGP 179
+P P
Sbjct: 66 TPAAPSP 72
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 29.6 bits (65), Expect = 1.5
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 133 PKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPGP 179
P+ P P P+ GC R G G P AAA + P P
Sbjct: 66 PQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPP 112
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 133 PKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSP 177
P R+ P PAP G RP G R H PA A SL+P
Sbjct: 319 PPAARRPPPPPAP---GAPARPLRGRRSHGPAARPRAVPTTSLAP 360
>gi|208431824 forkhead box I3 [Homo sapiens]
Length = 420
Score = 29.6 bits (65), Expect = 1.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 140 RPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPG 178
+P PA +GC+ RP + +PA A A+ AA PG
Sbjct: 94 QPPPAAGTFGCSQRPFA-----QPAPAAPASPAAPAGPG 127
>gi|116174748 developing brain homeobox 2 [Homo sapiens]
Length = 339
Score = 29.6 bits (65), Expect = 1.5
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 30/117 (25%)
Query: 81 APSGWKLQETEVNP-PVVLVDLNLQVSFPCVPFATKISFGVYTSKADTPAVIEPKRRRQH 139
A +G +L+ +P P+ L QVS P+ T+ +F V + AD+ +
Sbjct: 67 ATAGAQLRPLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQVLSPSADSARL--------- 117
Query: 140 RPQPAPAVWGCNHRPGS-------------------GGRCHRPATAVAAAAAASLSP 177
P AP C +P + GG C RPA++ A S+ P
Sbjct: 118 -PGRAPGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCRRPASSTAFPREESMLP 173
>gi|225543407 BTB domain protein BDPL [Homo sapiens]
Length = 485
Score = 29.3 bits (64), Expect = 1.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 141 PQPAPAVWGCNHRPGSGGRCHRP 163
P PAP G NH+ G RC RP
Sbjct: 45 PAPAPPTLGNNHQESPGWRCCRP 67
>gi|28558973 mediator complex subunit 14 [Homo sapiens]
Length = 1454
Score = 29.3 bits (64), Expect = 1.9
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 133 PKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSPGPR 180
P + H+ P G + P S P AVAAAAAA+ SPG R
Sbjct: 3 PVQLENHQLVPPGGGGGGSGGPPSAPAPPPPGAAVAAAAAAAASPGYR 50
>gi|239752827 PREDICTED: hypothetical protein [Homo sapiens]
Length = 97
Score = 28.5 bits (62), Expect = 3.3
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 111 PFATKISFGVYTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAA 170
P + G A++ +RR + P P V +P G CH P T
Sbjct: 8 PMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPPQT----P 63
Query: 171 AAASLSP 177
AA S SP
Sbjct: 64 AAGSRSP 70
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 28.5 bits (62), Expect = 3.3
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 137 RQHRP--QPAPAVWGCNHRPGSGGRCHRPATAVAAAAAA 173
R HRP Q AP+ HRPG+ GR R AVA A A
Sbjct: 921 RAHRPGAQGAPSH---RHRPGARGRRSRRRAAVALAGGA 956
>gi|239747386 PREDICTED: hypothetical protein XP_002346570 [Homo
sapiens]
Length = 97
Score = 28.5 bits (62), Expect = 3.3
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 111 PFATKISFGVYTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAA 170
P + G A++ +RR + P P V +P G CH P T
Sbjct: 8 PMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPPQT----P 63
Query: 171 AAASLSP 177
AA S SP
Sbjct: 64 AAGSRSP 70
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 28.5 bits (62), Expect = 3.3
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 137 RQHRP--QPAPAVWGCNHRPGSGGRCHRPATAVAAAAAA 173
R HRP Q AP+ HRPG+ GR R AVA A A
Sbjct: 921 RAHRPGAQGAPSH---RHRPGARGRRSRRRAAVALAGGA 956
>gi|239741211 PREDICTED: hypothetical protein XP_002342098 [Homo
sapiens]
Length = 97
Score = 28.5 bits (62), Expect = 3.3
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 111 PFATKISFGVYTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAA 170
P + G A++ +RR + P P V +P G CH P T
Sbjct: 8 PMRYPLRHGATCWSLSASAMLSQRRRPRALPTAPPVVSVTETQPPRSGHCHPPQT----P 63
Query: 171 AAASLSP 177
AA S SP
Sbjct: 64 AAGSRSP 70
>gi|169201831 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 28.1 bits (61), Expect = 4.3
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 149 GCNHRPGSGGRCHRPATAVAAAAAASLSP 177
G H PGSG CH AAAA+S P
Sbjct: 7 GAGHTPGSG--CHHLKVQTTAAAASSSEP 33
>gi|113421750 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 28.1 bits (61), Expect = 4.3
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 149 GCNHRPGSGGRCHRPATAVAAAAAASLSP 177
G H PGSG CH AAAA+S P
Sbjct: 7 GAGHTPGSG--CHHLKVQTTAAAASSSEP 33
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 28.1 bits (61), Expect = 4.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 133 PKRRRQHRPQPAPAV--WGCNHRPGSGGRCHR 162
P+ R+ RP+P PA+ +PGSG RC R
Sbjct: 247 PETARRPRPRPRPALPRRAREPQPGSGRRCRR 278
>gi|145699139 cartilage intermediate layer protein 2 [Homo sapiens]
Length = 1156
Score = 28.1 bits (61), Expect = 4.3
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 102 NLQVSFPCVPFATKISFGVYTSKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCH 161
N V F C + S+G + P RR + R P+PA C RP +C
Sbjct: 136 NYHVRFRC---PLEASWGAWGPWGPCSGSCGPGRRLRRRHCPSPAGDACPGRPLEAQKCV 192
Query: 162 RP 163
RP
Sbjct: 193 RP 194
>gi|149944524 hypothetical protein LOC400591 [Homo sapiens]
Length = 167
Score = 28.1 bits (61), Expect = 4.3
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 123 SKADTPAVIEPKRRRQHRPQPAPAVWGCNHRPGSGGRCHRPATAVAAAAAASLSP 177
S+ D AV + +R H P AP V+ C+ GR H T A A P
Sbjct: 34 SRVDATAVTDVPFQRMHAPHRAPEVF-CSRSSRGAGRGHPTPTPRVRWALAGNQP 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,041,299
Number of Sequences: 37866
Number of extensions: 382927
Number of successful extensions: 1748
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1718
Number of HSP's gapped (non-prelim): 61
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.