Guide to the Human Genome
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Name: C17orf102 Sequence: fasta or formatted (167aa) NCBI GI: 149944524
Description:

hypothetical protein LOC400591

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         16           2
 C cysteine            2.4          4           2
 D aspartate           2.4          4           1
 E glutamate           3.6          6           3
 F phenylalanine       4.8          8           1
 G glycine            12.0         20           2
 H histidine           3.0          5           1
 I isoleucine          2.4          4           1
 K lysine              1.2          2           1
 L leucine             9.0         15           3
 M methionine          3.0          5           1
 N asparagine          1.8          3           1
 P proline             7.2         12           1
 Q glutamine           3.0          5           1
 R arginine            9.6         16           1
 S serine              9.0         15           2
 T threonine           7.2         12           2
 V valine              7.2         12           1
 W tryptophan          1.2          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC400591 
SHANK1                0.019   SH3 and multiple ankyrin repeat domains 1 
LOC729956             0.016   hypothetical protein LOC729956 
ATOH1                 0.016   atonal homolog 1 
POL3S                 0.016   polyserase 3 
LOC100293975          0.016   PREDICTED: hypothetical protein 
LOC100130503          0.016   PREDICTED: hypothetical protein 
LOC100290812          0.016   PREDICTED: hypothetical protein XP_002347678 
LOC100130503          0.016   PREDICTED: hypothetical protein 
LOC100288205          0.016   PREDICTED: hypothetical protein XP_002343496 
CACNA1H               0.013   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.013   calcium channel, voltage-dependent, T type, alpha 1H...
NLRC3                 0.013   NOD3 protein 
CELSR2                0.009   cadherin EGF LAG seven-pass G-type receptor 2 
AES                   0.009   amino-terminal enhancer of split isoform a 
LOC339192             0.009   PREDICTED: hypothetical protein 
LOC100293104          0.009   PREDICTED: hypothetical protein 
LOC100293756          0.009   PREDICTED: hypothetical protein 
LOC100289316          0.009   PREDICTED: hypothetical protein 
LOC339192             0.009   PREDICTED: hypothetical protein 
LOC100287751          0.009   PREDICTED: hypothetical protein 
LOC100289316          0.009   PREDICTED: hypothetical protein XP_002343619 
LOC339192             0.009   PREDICTED: hypothetical protein 
LOC100287751          0.009   PREDICTED: hypothetical protein XP_002342191 
TBC1D10B              0.009   TBC1 domain family, member 10B 
PNMA1                 0.009   paraneoplastic antigen MA1 
ALK                   0.006   anaplastic lymphoma kinase 
LOC100293575          0.006   PREDICTED: hypothetical protein 
LOC100289408          0.006   PREDICTED: hypothetical protein 
LOC100290681          0.006   PREDICTED: hypothetical protein XP_002346859 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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