Guide to the Human Genome
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Name: CILP2 Sequence: fasta or formatted (1156aa) NCBI GI: 145699139
Description:

cartilage intermediate layer protein 2

Referenced in:

Bone and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0        116           2
 C cysteine            3.5         40           2
 D aspartate           5.1         59           2
 E glutamate           6.1         70           3
 F phenylalanine       3.5         41           1
 G glycine             9.0        104           2
 H histidine           2.0         23           1
 I isoleucine          1.9         22           2
 K lysine              2.2         26           2
 L leucine             8.5         98           2
 M methionine          1.2         14           1
 N asparagine          2.2         25           1
 P proline             9.5        110           3
 Q glutamine           3.1         36           1
 R arginine           10.2        118           3
 S serine              6.2         72           2
 T threonine           4.6         53           2
 V valine              7.4         85           3
 W tryptophan          1.5         17           2
 Y tyrosine            2.3         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cartilage intermediate layer protein 2 
CILP                  0.490   cartilage intermediate layer protein 
ADAMTS1               0.016   ADAM metallopeptidase with thrombospondin type 1 mot...
HMCN1                 0.016   hemicentin 1 
BAI1                  0.016   brain-specific angiogenesis inhibitor 1 precursor [...
CFP                   0.015   complement factor properdin precursor 
CFP                   0.015   complement factor properdin precursor 
BAI2                  0.015   brain-specific angiogenesis inhibitor 2 
ADAMTS2               0.014   ADAM metallopeptidase with thrombospondin type 1 mo...
SSPO                  0.014   SCO-spondin 
PRTG                  0.014   protogenin 
LOC100132635          0.014   PREDICTED: similar to mucin 5, partial 
IGDCC3                0.014   putative neuronal cell adhesion molecule 
SEMA5B                0.014   semaphorin 5B isoform 1 
THBS2                 0.014   thrombospondin 2 precursor 
SEMA5A                0.013   semaphorin 5A 
THBS1                 0.013   thrombospondin 1 precursor 
ADAMTS4               0.013   ADAM metallopeptidase with thrombospondin type 1 mo...
SIGLEC1               0.013   sialoadhesin precursor 
ADAMTS17              0.013   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS16              0.013   ADAM metallopeptidase with thrombospondin type 1 mo...
NCAM2                 0.013   neural cell adhesion molecule 2 precursor 
THSD1                 0.013   thrombospondin type I domain-containing 1 isoform 1 [...
ADAMTS15              0.013   a disintegrin-like and metalloprotease (reprolysin t...
ADAMTS10              0.012   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.012   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.012   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.012   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS5               0.012   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS14              0.012   ADAM metallopeptidase with thrombospondin type 1 mot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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