Guide to the Human Genome
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Name: LOC100293756 Sequence: fasta or formatted (180aa) NCBI GI: 239752953
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         16           6
 C cysteine            2.2          4           1
 D aspartate           3.3          6           1
 E glutamate           3.3          6           1
 F phenylalanine       2.2          4           1
 G glycine             7.8         14           2
 H histidine           2.2          4           1
 I isoleucine          2.2          4           1
 K lysine              7.2         13           2
 L leucine             6.7         12           2
 M methionine          0.6          1           1
 N asparagine          3.3          6           1
 P proline             8.3         15           2
 Q glutamine           4.4          8           2
 R arginine           10.6         19           3
 S serine              7.8         14           2
 T threonine           7.8         14           1
 V valine              7.8         14           2
 W tryptophan          1.7          3           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287751          1.000   PREDICTED: hypothetical protein 
LOC100287751          1.000   PREDICTED: hypothetical protein XP_002342191 
LOC100291594          0.023   PREDICTED: hypothetical protein XP_002345692 
LOC100289769          0.023   PREDICTED: hypothetical protein XP_002346534 
LOC100287401          0.023   PREDICTED: hypothetical protein XP_002342373 
ZFR                   0.020   zinc finger RNA binding protein 
LOC100292188          0.017   PREDICTED: hypothetical protein 
LOC100288824          0.017   PREDICTED: hypothetical protein 
LOC100288824          0.017   PREDICTED: hypothetical protein XP_002343711 
LOC100288131          0.014   PREDICTED: hypothetical protein 
LOC100288131          0.014   PREDICTED: hypothetical protein XP_002343331 
FOXK1                 0.014   forkhead box K1 
FAM101B               0.014   hypothetical protein LOC359845 
HOXD8                 0.014   homeobox D8 
LOC100128074          0.014   PREDICTED: hypothetical protein 
FOXI3                 0.014   forkhead box I3 
DBX2                  0.014   developing brain homeobox 2 
BTBD6                 0.012   BTB domain protein BDPL 
MED14                 0.012   mediator complex subunit 14 
LOC100294019          0.009   PREDICTED: hypothetical protein 
LOC728767             0.009   PREDICTED: hypothetical protein 
LOC100290802          0.009   PREDICTED: hypothetical protein XP_002346570 
LOC728767             0.009   PREDICTED: hypothetical protein 
LOC100288818          0.009   PREDICTED: hypothetical protein XP_002342098 
LOC728065             0.009   PREDICTED: hypothetical protein 
LOC728065             0.009   PREDICTED: hypothetical protein 
LOC100286967          0.009   PREDICTED: hypothetical protein XP_002342247 
CILP2                 0.009   cartilage intermediate layer protein 2 
C17orf102             0.009   hypothetical protein LOC400591 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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