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Search of human proteins with 239741321
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741321 PREDICTED: hypothetical protein XP_002342193 [Homo
sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741321 PREDICTED: hypothetical protein XP_002342193 [Homo ... 267 2e-72
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 42 9e-05
gi|146134388 YLP motif containing 1 [Homo sapiens] 42 9e-05
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 40 4e-04
gi|62460633 RNA-binding motif protein 16 [Homo sapiens] 39 8e-04
gi|116284392 mucin 2 precursor [Homo sapiens] 39 0.001
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi... 39 0.001
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap... 39 0.001
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi... 39 0.001
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi... 39 0.001
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi... 39 0.001
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi... 39 0.001
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi... 39 0.001
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi... 39 0.001
gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo ... 39 0.001
gi|239740786 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|239740731 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 39 0.001
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 39 0.001
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 39 0.001
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 38 0.002
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 38 0.002
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 38 0.002
gi|47132519 Ras association and pleckstrin homology domains 1 is... 38 0.002
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 37 0.004
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 37 0.005
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 37 0.005
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens] 36 0.006
gi|150170670 piccolo isoform 2 [Homo sapiens] 36 0.006
gi|150378539 piccolo isoform 1 [Homo sapiens] 36 0.006
>gi|239741321 PREDICTED: hypothetical protein XP_002342193 [Homo
sapiens]
Length = 123
Score = 267 bits (682), Expect = 2e-72
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MSACPTGTAQRPRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQ 60
MSACPTGTAQRPRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQ
Sbjct: 1 MSACPTGTAQRPRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQ 60
Query: 61 PRALSPPRFCPPPLSSLCTSPPWLPLSPELTVDAGFFRTPLGNTEWKRGSVRKCLVECRH 120
PRALSPPRFCPPPLSSLCTSPPWLPLSPELTVDAGFFRTPLGNTEWKRGSVRKCLVECRH
Sbjct: 61 PRALSPPRFCPPPLSSLCTSPPWLPLSPELTVDAGFFRTPLGNTEWKRGSVRKCLVECRH 120
Query: 121 CGI 123
CGI
Sbjct: 121 CGI 123
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 42.4 bits (98), Expect = 9e-05
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 27 PLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCPPPLSSLCTSP--PWL 84
P+ ILP H LP PP P P S+ A P P PP PPP + +P P L
Sbjct: 2473 PITILPVHILPSPPP---PSQIPP-CSSPACTPPPACTPPPAHTPPPAQTCLVTPSSPLL 2528
Query: 85 PLSPELTVDAGFFRTPLG 102
P + + A PLG
Sbjct: 2529 LGPPSVPISASVTNLPLG 2546
Score = 30.0 bits (66), Expect = 0.46
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 15 GRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCPPPL 74
GRT+ V P APL +P P P ++ PG + PA + SP PPL
Sbjct: 1006 GRTVVVVNNPRAPLGPVPVR--PPPGPELSAQPTPGPVPQVLPASLMVSASP---AGPPL 1060
Query: 75 SSLCTSPPWLPLSPELTVDAG 95
+ PP L P L ++G
Sbjct: 1061 IP-ASRPPGPVLLPPLQPNSG 1080
Score = 29.6 bits (65), Expect = 0.60
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 5 PTGTAQRP------RPGRTLRVTTLPTAPLAIL-PNHSLPKIP-----PTVTPHDNPGRL 52
PT T RP P + + APL I P H +P P P+ +P
Sbjct: 1366 PTPTLVRPLLKLVHSPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLAS 1425
Query: 53 SAAAPAPQPRALSPPRFCPPPLSSLCTSPPWLPLSPELTVDA 94
++ P + S P P L + ++P +P+S LTV A
Sbjct: 1426 PVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSA 1467
Score = 27.7 bits (60), Expect = 2.3
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 5 PTGTAQ-RPRPGRTLRVTTLPTA-------PLAILPNHSLPKIPPTVTPHDNPGRLSAAA 56
PT T +P P +R++ P PL + P ++ P T T + A
Sbjct: 1100 PTPTLSLKPTPPAPVRLSPAPPPGSSSLLKPLTVPPGYTFPPAAATTTSTTTATATTTAV 1159
Query: 57 PAPQP 61
PAP P
Sbjct: 1160 PAPTP 1164
Score = 27.3 bits (59), Expect = 3.0
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 7 GTAQRPRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSP 66
GTA+ P P TL P L P+ + P P L + P P +
Sbjct: 1359 GTARAPMPTPTL---VRPLLKLVHSPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPM 1415
Query: 67 PRFCPPPLSSLCTSPPWLPLSPELTV 92
P PL+S +S +PLS L +
Sbjct: 1416 PIPNSSPLASPVSSTVSVPLSSSLPI 1441
Score = 26.9 bits (58), Expect = 3.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 66 PPRFCPPPLSSLCTSPPWL 84
PP PPP C PPWL
Sbjct: 1981 PPVEAPPPSLHACHPPPWL 1999
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 42.4 bits (98), Expect = 9e-05
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 24 PTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAP--QPRALS---PPRFCPPPLSSLC 78
P P ++P P +P +V P P LS+A P P P +LS PP PPP S
Sbjct: 558 PGMPPPVMP----PSLPTSVPPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSST 613
Query: 79 TSPPWLPLSP 88
PP +PL P
Sbjct: 614 APPPVMPLPP 623
Score = 35.8 bits (81), Expect = 0.008
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 23 LPTAPLAILPNHSLPKI----------PPTVTPHDNPGRLSAAAPAP-QPRALS---PPR 68
LPT P +LP P + PP + P P L + P P P +LS PP
Sbjct: 530 LPTMPPPVLPPSLPPPVMPPALPATVPPPGMPPPVMPPSLPTSVPPPGMPPSLSSAGPPP 589
Query: 69 FCPPPLSSLCTSPPWLP 85
PPP S PP LP
Sbjct: 590 VLPPPSLSSAGPPPVLP 606
Score = 35.4 bits (80), Expect = 0.011
Identities = 38/104 (36%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 5 PTGTAQRPRPGRTLRVTTLPTAPLAILPNHSLPKI----PPTVTPHDNPGRLSAAAPAP- 59
P A P PG V P+ P ++ P P + PP V P P LS+A P P
Sbjct: 549 PALPATVPPPGMPPPVMP-PSLPTSVPPPGMPPSLSSAGPPPVLP---PPSLSSAGPPPV 604
Query: 60 -QPRALS---PPRFCP-PPLSSLCTSPPWLP-------LSPELT 91
P +LS PP P PPLSS T PP +P + P+LT
Sbjct: 605 LPPPSLSSTAPPPVMPLPPLSS-ATPPPGIPPPGVPQGIPPQLT 647
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 40.0 bits (92), Expect = 4e-04
Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 1 MSACPTGTAQRPRP--GRTLRVTTLPTAPLAILPNHSLPKIP-------PTVTPHDNPGR 51
+SA P Q P P TL + +PT LA +P + P P PT TP P
Sbjct: 309 VSAPPLALIQAPVPPSAPTLVLAPVPTPVLAPMPASTPPAAPAPPSVPMPTPTPSSGPPS 368
Query: 52 ----LSAAAPAPQPRALSPPRFCPPPLSSLCTSPPWLPLS 87
+ A AP P P P F P P +P +P S
Sbjct: 369 TPTLIPAFAPTPVPAPTPAPIFTPAPTPMPAATPAAIPTS 408
Score = 31.6 bits (70), Expect = 0.16
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 24 PTAPLAILPNHS-LPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCPPPLSSLCTSPP 82
P+ PLA +P + P PT+ NP +SA+ P P + P P PLS+ +P
Sbjct: 248 PSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPASAPPSG--PVPLSAPAPAPL 305
Query: 83 WLPLS 87
+P+S
Sbjct: 306 SVPVS 310
Score = 28.9 bits (63), Expect = 1.0
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 24 PTAPLAILPNHSLP---KIP---PTVTPHDN--PGRLSAAAPAPQPRALSPPRFCPPPLS 75
P AP + HS+P ++P P PH P +++ + PAP P P P P S
Sbjct: 205 PPAPGSASVPHSVPDAFQVPLSVPAPVPHSGLVPVQVATSVPAPSPPLAPVPALAPAPPS 264
Score = 26.6 bits (57), Expect = 5.1
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 27 PLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCPPPLSSLCTSPPWLP 85
PL++ + +P P P P LSA APAP LS P PP PP P
Sbjct: 274 PLSVSASVLVPV--PASAPPSGPVPLSAPAPAP----LSVPVSAPPLALIQAPVPPSAP 326
>gi|62460633 RNA-binding motif protein 16 [Homo sapiens]
Length = 1271
Score = 39.3 bits (90), Expect = 8e-04
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 21/102 (20%)
Query: 12 PRPGRTLRVTTLPTAP-LAILPNH---SLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPP 67
P P L++ P P ++++P S+P PP +P P L A+ QP PP
Sbjct: 635 PPPVAMLQIPVAPAVPTVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQP----PP 690
Query: 68 RFCPPPLSSLCTSPPWLP-------------LSPELTVDAGF 96
F PPP+ PP +P ++PE D GF
Sbjct: 691 GFMPPPVPPPVVPPPTIPPVVPTSLVQPSLSMTPETVKDVGF 732
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 38.9 bits (89), Expect = 0.001
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 5 PTGTAQRPRPGRTLRVTTLPTAPLA--ILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPR 62
PT T P P TT P+ P I P S +PPT TP P + P P
Sbjct: 1605 PTTTTTTPPP------TTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTP- 1657
Query: 63 ALSPPRFC--PPPLSSLCTSPPWLPLSPELT 91
SPP PP+++ T PP S +T
Sbjct: 1658 --SPPTTTTPSPPITTTTTPPPTTTPSSPIT 1686
Score = 38.5 bits (88), Expect = 0.001
Identities = 31/91 (34%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 5 PTGTAQRPRPGRTLRVTTLPTAPLA--ILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPR 62
PT T P P TT P+ P I P S +PPT TP P + P P
Sbjct: 1526 PTTTTTTPPP------TTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTP- 1578
Query: 63 ALSPPRFC--PPPLSSLCTSPPWLPLSPELT 91
SPP PP + T PP SP T
Sbjct: 1579 --SPPTTTTPSPPTITTTTPPPTTTPSPPTT 1607
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 5 PTGTAQRPRPGRTLRVTTLPTAPLA--ILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPR 62
PT T P P TT P+ P I P S +PPT TP +P + P P
Sbjct: 1487 PTTTTTTPPP------TTTPSPPTTTPITPPASTTTLPPTTTP--SPPTTTTTTPPPTTT 1538
Query: 63 ALSPPRFCP--PPLSSLCTSPPWLPLSPELT 91
SPP P PP S+ P P P T
Sbjct: 1539 P-SPPTTTPITPPTSTTTLPPTTTPSPPPTT 1568
Score = 35.4 bits (80), Expect = 0.011
Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 5 PTGTAQRPRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRAL 64
P T P P T TTLP P + PPT TP +P
Sbjct: 1401 PPTTTPSPPPTST---TTLPPTTTPSPPTTTTTTPPPTTTP----------SPPITTTTT 1447
Query: 65 SPPRFCP-PPLSSLCTSPPWLPLSPELTVDAGFFRTP 100
PP P PP+S+ T PP SP T + TP
Sbjct: 1448 PPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTP 1484
Score = 34.7 bits (78), Expect = 0.019
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
Query: 5 PTGTAQRPRPGRT----LRVTTLPTAPLAILPNHSLPKIP-PTVTPHDNPGRLSAAAPAP 59
PT T P P T + TT P++ P + P PT TP ++ P
Sbjct: 1692 PTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTT 1751
Query: 60 QPRALS----PPRFCPPPLSSLCTSPPWLPLSPELT----VDAG--FFRTPLGNTE 105
L+ PP PP S T+ P P P +D+G F P G+TE
Sbjct: 1752 TSSPLTTTPLPPSITPPTFSPFSTTTPTTPCVPLCNWTGWLDSGKPNFHKPGGDTE 1807
Score = 34.3 bits (77), Expect = 0.024
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 5 PTGTAQRPRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRAL 64
PT T P T+ TT P P + PPT TP +P + P L
Sbjct: 1581 PTTTTPSPP---TITTTTPPPTTTPSPPTTTTTTPPPTTTP--SPPTTTPITPPTSTTTL 1635
Query: 65 SPPRFCPPPLSSLCTSPPWLPLSPELT 91
P PP ++ T PP SP T
Sbjct: 1636 PPTTTPSPPPTTTTTPPPTTTPSPPTT 1662
Score = 33.1 bits (74), Expect = 0.054
Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 18/93 (19%)
Query: 5 PTGTAQRPRPGRTLR--VTTLPTAPLAILPNHSLPKI---PPTVTPHDNPGRLSAAAPAP 59
PT T P P T +TT T P P+ + PPT T P+P
Sbjct: 1425 PTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTT------------PSP 1472
Query: 60 QPRALSPPRFCP-PPLSSLCTSPPWLPLSPELT 91
SPP P PP ++ T PP SP T
Sbjct: 1473 PTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTT 1505
Score = 33.1 bits (74), Expect = 0.054
Identities = 27/90 (30%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 5 PTGTAQRPRPGRTLRV-TTLPTAPLAIL--PNHSLPKIPPTVTPHDNPGRLSAAAPAPQP 61
P T P P T TT P+ P P + PPT TP +P + P
Sbjct: 1457 PISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTP--SPPTTTPITPPAST 1514
Query: 62 RALSPPRFCPPPLSSLCTSPPWLPLSPELT 91
L P PP ++ T PP SP T
Sbjct: 1515 TTLPPTTTPSPPTTTTTTPPPTTTPSPPTT 1544
Score = 33.1 bits (74), Expect = 0.054
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 5 PTGTAQRPRPGRTLR--VTTLPTAPLAILPNHSLPKIPPT-VTPHDNPGRLSAAAPAPQP 61
P T P P T +TT P+ P + S P + +T P + +P P
Sbjct: 1668 PITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTT 1727
Query: 62 RALSPPRFCP-PPLSSLCTSPPWLPLSPELT 91
P P PP +++ T PP SP T
Sbjct: 1728 MTTPSPTTTPSPPTTTMTTLPPTTTSSPLTT 1758
Score = 32.0 bits (71), Expect = 0.12
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 12 PRPGRTLRVTTLPTAPLAIL--PNHSLPKIPPTVTPHDNPGRLS----AAAPAPQPRALS 65
P TL TT P+ P P + PPT TP P + P+P P +
Sbjct: 1511 PASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTT 1570
Query: 66 --PPRFCPPPLSSLCTSPP 82
PP P P ++ SPP
Sbjct: 1571 TPPPTTTPSPPTTTTPSPP 1589
Score = 32.0 bits (71), Expect = 0.12
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 5 PTGTAQRPRPGRTLR--VTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLS----AAAPA 58
PT T P P T TT T P P+ PPT TP P + P+
Sbjct: 1589 PTITTTTPPPTTTPSPPTTTTTTPPPTTTPS------PPTTTPITPPTSTTTLPPTTTPS 1642
Query: 59 PQPRALS--PPRFCPPPLSSLCTSPP 82
P P + PP P P ++ SPP
Sbjct: 1643 PPPTTTTTPPPTTTPSPPTTTTPSPP 1668
Score = 31.6 bits (70), Expect = 0.16
Identities = 29/97 (29%), Positives = 34/97 (35%), Gaps = 16/97 (16%)
Query: 5 PTGTAQRPRPGRTLRV--TTLPTAPLAILPNHSLPKIPPTVT-----PHDNPGRLSAAAP 57
P T P P T TT P+ P P+ PPT+T P P +
Sbjct: 1557 PPTTTPSPPPTTTTTPPPTTTPSPPTTTTPS------PPTITTTTPPPTTTPSPPTTTTT 1610
Query: 58 APQPRAL-SPPRFCP--PPLSSLCTSPPWLPLSPELT 91
P P SPP P PP S+ P P P T
Sbjct: 1611 TPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTT 1647
Score = 31.6 bits (70), Expect = 0.16
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 12 PRPGRTLRVTTLPTAPLAIL---PNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPR 68
P TL TT P+ P P + P P T TP +P + P P SP
Sbjct: 1629 PTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTP--SPPITTTTTPPPTTTPSSPIT 1686
Query: 69 FCP-PPLSSLCT-SPPWLPLSPELT 91
P PP +++ T SP P SP T
Sbjct: 1687 TTPSPPTTTMTTPSPTTTPSSPITT 1711
Score = 30.4 bits (67), Expect = 0.35
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 5 PTGTAQRPRPGRTLRVTTLPTAPLA--ILPNHSLPKIPPTVTPH---DNPGRLSAAAPAP 59
P T P P TT P+ P++ P + PPT TP P + P
Sbjct: 1441 PITTTTTPPP------TTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTP 1494
Query: 60 QPRAL-SPPRFCP-PPLSSLCTSPPWLPLSPELT 91
P SPP P P +S T PP SP T
Sbjct: 1495 PPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTT 1528
Score = 29.6 bits (65), Expect = 0.60
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 5 PTGTAQRPRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRAL 64
PTGT P T TAP+A L + P P + TP + S + +P +
Sbjct: 4190 PTGTQTGPP-------THTSTAPIAELTTSNPP--PESSTP-----QTSRSTSSPLTEST 4235
Query: 65 SPPRFCPPPLSSLCTSPPWLPLSPELT 91
+ PP + T+PP P +P T
Sbjct: 4236 TLLSTLPPAIEMTSTAPPSTPTAPTTT 4262
>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
Length = 1955
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 37 PKIPPTVTPHDNPGRLSAAAPAPQPRALSPP-------RFCPPPLSSLCTSPPWLPL 86
P I P+ P P +S +P P P L+PP FCPPP SPP +PL
Sbjct: 1738 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPP------SPPSIPL 1788
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 32 PNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPP---RFCPPPLSSLCTSPP 82
P+ LP PPT P LS + P L PP PPP S C PP
Sbjct: 1784 PSIPLPLPPPTFFP------LSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPP 1831
>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
Length = 1932
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 37 PKIPPTVTPHDNPGRLSAAAPAPQPRALSPP-------RFCPPPLSSLCTSPPWLPL 86
P I P+ P P +S +P P P L+PP FCPPP SPP +PL
Sbjct: 1715 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPP------SPPSIPL 1765
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 32 PNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPP---RFCPPPLSSLCTSPP 82
P+ LP PPT P LS + P L PP PPP S C PP
Sbjct: 1761 PSIPLPLPPPTFFP------LSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPP 1808
>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
Length = 1935
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 37 PKIPPTVTPHDNPGRLSAAAPAPQPRALSPP-------RFCPPPLSSLCTSPPWLPL 86
P I P+ P P +S +P P P L+PP FCPPP SPP +PL
Sbjct: 1718 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPP------SPPSIPL 1768
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 32 PNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPP---RFCPPPLSSLCTSPP 82
P+ LP PPT P LS + P L PP PPP S C PP
Sbjct: 1764 PSIPLPLPPPTFFP------LSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPP 1811
>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
Length = 1915
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 37 PKIPPTVTPHDNPGRLSAAAPAPQPRALSPP-------RFCPPPLSSLCTSPPWLPL 86
P I P+ P P +S +P P P L+PP FCPPP SPP +PL
Sbjct: 1698 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPP------SPPSIPL 1748
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 32 PNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPP---RFCPPPLSSLCTSPP 82
P+ LP PPT P LS + P L PP PPP S C PP
Sbjct: 1744 PSIPLPLPPPTFFP------LSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPP 1791
>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
Length = 1952
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 37 PKIPPTVTPHDNPGRLSAAAPAPQPRALSPP-------RFCPPPLSSLCTSPPWLPL 86
P I P+ P P +S +P P P L+PP FCPPP SPP +PL
Sbjct: 1735 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPP------SPPSIPL 1785
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 32 PNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPP---RFCPPPLSSLCTSPP 82
P+ LP PPT P LS + P L PP PPP S C PP
Sbjct: 1781 PSIPLPLPPPTFFP------LSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPP 1828
>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
Length = 1886
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 37 PKIPPTVTPHDNPGRLSAAAPAPQPRALSPP-------RFCPPPLSSLCTSPPWLPL 86
P I P+ P P +S +P P P L+PP FCPPP SPP +PL
Sbjct: 1669 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPP------SPPSIPL 1719
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 32 PNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPP---RFCPPPLSSLCTSPP 82
P+ LP PPT P LS + P L PP PPP S C PP
Sbjct: 1715 PSIPLPLPPPTFFP------LSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPP 1762
>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
Length = 1957
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 37 PKIPPTVTPHDNPGRLSAAAPAPQPRALSPP-------RFCPPPLSSLCTSPPWLPL 86
P I P+ P P +S +P P P L+PP FCPPP SPP +PL
Sbjct: 1740 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPP------SPPSIPL 1790
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 32 PNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPP---RFCPPPLSSLCTSPP 82
P+ LP PPT P LS + P L PP PPP S C PP
Sbjct: 1786 PSIPLPLPPPTFFP------LSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPP 1833
>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
Length = 1962
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 37 PKIPPTVTPHDNPGRLSAAAPAPQPRALSPP-------RFCPPPLSSLCTSPPWLPL 86
P I P+ P P +S +P P P L+PP FCPPP SPP +PL
Sbjct: 1745 PNISPSACPLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPP------SPPSIPL 1795
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 32 PNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPP---RFCPPPLSSLCTSPP 82
P+ LP PPT P LS + P L PP PPP S C PP
Sbjct: 1791 PSIPLPLPPPTFFP------LSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPP 1838
>gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo
sapiens]
Length = 138
Score = 38.5 bits (88), Expect = 0.001
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 24 PTAPLAILPNHSLPKIPPTVTPHDNPGRLS-------AAAPAPQPRALSPPRFCPPP--- 73
P AP + P+ PP + P PG L ++ PAP P + S P P
Sbjct: 23 PRAPFELWPDPEREGQPPHLPP--TPGSLGLPGSGHGSSGPAPPPASPSHPHRLPLQPLG 80
Query: 74 -LSSLCTSPPWLPLSPELT--VDAGFFRTPLGNTEWKRGS 110
LS L +SP L P L D G+ TP G + W+R S
Sbjct: 81 FLSFLVSSPTHLQRPPPLLSRCDLGWGPTPRGQSWWRRES 120
>gi|239740786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 38.5 bits (88), Expect = 0.001
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 24 PTAPLAILPNHSLPKIPPTVTPHDNPGRLS-------AAAPAPQPRALSPPRFCPPP--- 73
P AP + P+ PP + P PG L ++ PAP P + S P P
Sbjct: 23 PRAPFELWPDPEREGQPPHLPP--TPGSLGLPGSGHGSSGPAPPPASPSHPHRLPLQPLG 80
Query: 74 -LSSLCTSPPWLPLSPELT--VDAGFFRTPLGNTEWKRGS 110
LS L +SP L P L D G+ TP G + W+R S
Sbjct: 81 FLSFLVSSPTHLQRPPPLLSRCDLGWGPTPRGQSWWRRES 120
>gi|239740731 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 38.5 bits (88), Expect = 0.001
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 24 PTAPLAILPNHSLPKIPPTVTPHDNPGRLS-------AAAPAPQPRALSPPRFCPPP--- 73
P AP + P+ PP + P PG L ++ PAP P + S P P
Sbjct: 23 PRAPFELWPDPEREGQPPHLPP--TPGSLGLPGSGHGSSGPAPPPASPSHPHRLPLQPLG 80
Query: 74 -LSSLCTSPPWLPLSPELT--VDAGFFRTPLGNTEWKRGS 110
LS L +SP L P L D G+ TP G + W+R S
Sbjct: 81 FLSFLVSSPTHLQRPPPLLSRCDLGWGPTPRGQSWWRRES 120
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 38.5 bits (88), Expect = 0.001
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 2 SACPTGTAQRPRPGRTLRVTTLPT--APLAI-LPNHSLPKIPPTVTPHDNPGRLSAAAPA 58
S+ P GT Q P PG T T +P +P A PN P+ P PH + + A P
Sbjct: 198 SSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQ--PQAPTAPVPHTHIQQAPALHPQ 255
Query: 59 PQPRALSPPRFCP-PPLSSLCTS 80
P PP P PPL L S
Sbjct: 256 RPPSPHPPPHPSPHPPLQPLTGS 278
Score = 34.7 bits (78), Expect = 0.019
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 12 PRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALS------ 65
P P + PT P+ LP K PP ++ P S A P P AL
Sbjct: 366 PAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLS---GPSPFSMNANLPPPPALKPLSSLS 422
Query: 66 ---PPRFCPPPLSSLCTSPPWLPLSP 88
PP PPPL + S P LP SP
Sbjct: 423 THHPPSAHPPPLQLMPQSQP-LPSSP 447
Score = 27.7 bits (60), Expect = 2.3
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 10 QRPRPGRTLRVTTL----PTA-PLAILPNHSLPKIPPTVTPHD----NPG-------RLS 53
+R +PG ++ L P A P+ HS IPPT PH +PG RL+
Sbjct: 767 ERMKPGFEVKPPELDPLHPAANPMEHFARHSALTIPPTAGPHPFASFHPGLNPLERERLA 826
Query: 54 AAAPAPQPRALSPPR 68
A P +P P R
Sbjct: 827 LAGPQLRPEMSYPDR 841
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 38.5 bits (88), Expect = 0.001
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 2 SACPTGTAQRPRPGRTLRVTTLPT--APLAI-LPNHSLPKIPPTVTPHDNPGRLSAAAPA 58
S+ P GT Q P PG T T +P +P A PN P+ P PH + + A P
Sbjct: 752 SSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQ--PQAPTAPVPHTHIQQAPALHPQ 809
Query: 59 PQPRALSPPRFCP-PPLSSLCTS 80
P PP P PPL L S
Sbjct: 810 RPPSPHPPPHPSPHPPLQPLTGS 832
Score = 34.7 bits (78), Expect = 0.019
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 12 PRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALS------ 65
P P + PT P+ LP K PP ++ P S A P P AL
Sbjct: 920 PAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLS---GPSPFSMNANLPPPPALKPLSSLS 976
Query: 66 ---PPRFCPPPLSSLCTSPPWLPLSP 88
PP PPPL + S P LP SP
Sbjct: 977 THHPPSAHPPPLQLMPQSQP-LPSSP 1001
Score = 27.7 bits (60), Expect = 2.3
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 10 QRPRPGRTLRVTTL----PTA-PLAILPNHSLPKIPPTVTPHD----NPG-------RLS 53
+R +PG ++ L P A P+ HS IPPT PH +PG RL+
Sbjct: 1321 ERMKPGFEVKPPELDPLHPAANPMEHFARHSALTIPPTAGPHPFASFHPGLNPLERERLA 1380
Query: 54 AAAPAPQPRALSPPR 68
A P +P P R
Sbjct: 1381 LAGPQLRPEMSYPDR 1395
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 38.5 bits (88), Expect = 0.001
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 2 SACPTGTAQRPRPGRTLRVTTLPT--APLAI-LPNHSLPKIPPTVTPHDNPGRLSAAAPA 58
S+ P GT Q P PG T T +P +P A PN P+ P PH + + A P
Sbjct: 752 SSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQ--PQAPTAPVPHTHIQQAPALHPQ 809
Query: 59 PQPRALSPPRFCP-PPLSSLCTS 80
P PP P PPL L S
Sbjct: 810 RPPSPHPPPHPSPHPPLQPLTGS 832
Score = 34.7 bits (78), Expect = 0.019
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 12 PRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALS------ 65
P P + PT P+ LP K PP ++ P S A P P AL
Sbjct: 920 PAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLS---GPSPFSMNANLPPPPALKPLSSLS 976
Query: 66 ---PPRFCPPPLSSLCTSPPWLPLSP 88
PP PPPL + S P LP SP
Sbjct: 977 THHPPSAHPPPLQLMPQSQP-LPSSP 1001
Score = 27.7 bits (60), Expect = 2.3
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 10 QRPRPGRTLRVTTL----PTA-PLAILPNHSLPKIPPTVTPHD----NPG-------RLS 53
+R +PG ++ L P A P+ HS IPPT PH +PG RL+
Sbjct: 1321 ERMKPGFEVKPPELDPLHPAANPMEHFARHSALTIPPTAGPHPFASFHPGLNPLERERLA 1380
Query: 54 AAAPAPQPRALSPPR 68
A P +P P R
Sbjct: 1381 LAGPQLRPEMSYPDR 1395
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 23 LPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCPPPLSSLCTSPP 82
+PT P S P PP +T P L P P P + + P CP PLS+ P
Sbjct: 765 IPTDP------SSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSP 818
Query: 83 WLPLSPELT 91
LSP ++
Sbjct: 819 LPILSPTVS 827
Score = 32.0 bits (71), Expect = 0.12
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 20 VTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLS-AAAPAPQPRALSP-----PRFCPP- 72
V T+ T P +LP LP + +PH P LS A A +P P LSP P PP
Sbjct: 778 VLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLP-ILSPTVSPSPSPIPPV 836
Query: 73 -PLSSLCT-SPPWLPLSPELTVDAGFF 97
PL S + PP L S + + F
Sbjct: 837 EPLMSAASPGPPTLSSSSSSSSSSSSF 863
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 23 LPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCPPPLSSLCTSPP 82
+PT P S P PP +T P L P P P + + P CP PLS+ P
Sbjct: 966 IPTDP------SSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSP 1019
Query: 83 WLPLSPELT 91
LSP ++
Sbjct: 1020 LPILSPTVS 1028
Score = 32.0 bits (71), Expect = 0.12
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 20 VTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLS-AAAPAPQPRALSP-----PRFCPP- 72
V T+ T P +LP LP + +PH P LS A A +P P LSP P PP
Sbjct: 979 VLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLP-ILSPTVSPSPSPIPPV 1037
Query: 73 -PLSSLCT-SPPWLPLSPELTVDAGFF 97
PL S + PP L S + + F
Sbjct: 1038 EPLMSAASPGPPTLSSSSSSSSSSSSF 1064
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 23 LPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCPPPLSSLCTSPP 82
+PT P S P PP +T P L P P P + + P CP PLS+ P
Sbjct: 966 IPTDP------SSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSP 1019
Query: 83 WLPLSPELT 91
LSP ++
Sbjct: 1020 LPILSPTVS 1028
Score = 32.0 bits (71), Expect = 0.12
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 20 VTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLS-AAAPAPQPRALSP-----PRFCPP- 72
V T+ T P +LP LP + +PH P LS A A +P P LSP P PP
Sbjct: 979 VLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLP-ILSPTVSPSPSPIPPV 1037
Query: 73 -PLSSLCT-SPPWLPLSPELTVDAGFF 97
PL S + PP L S + + F
Sbjct: 1038 EPLMSAASPGPPTLSSSSSSSSSSSSF 1064
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 37.7 bits (86), Expect = 0.002
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 14 PGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQ--PRALSPPRFCP 71
P + L PT+ + P + PPT TP P + A PA P +PP P
Sbjct: 778 PPKPLVTIPAPTSTKTVAPVVT-QAAPPTPTPPVPPAKKQPAFPASYIPPSPPTPPVPVP 836
Query: 72 PPL----SSLCTSPPWLPLSP 88
PP S C PP PLSP
Sbjct: 837 PPTLPKQQSFCAKPPPSPLSP 857
Score = 30.8 bits (68), Expect = 0.27
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 23 LPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPR-----FCPPPLSSL 77
+ + PL +P + P+ PP V P ++ P P P PP F PPP S +
Sbjct: 878 MESQPLKPVPANVAPQSPPAVKA--KPKWQPSSIPVPSPDFPPPPPESSLVFPPPPPSPV 935
Query: 78 CTSPPWLPLSPELTVD 93
PP P + T D
Sbjct: 936 PAPPPPPPPTASPTPD 951
Score = 28.1 bits (61), Expect = 1.8
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 5 PTGTAQRPRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPG------RLSAAAPA 58
PT A +P + + P +P A+ + PK P+ P +P S P
Sbjct: 873 PTPPAMESQPLKPVPANVAPQSPPAV---KAKPKWQPSSIPVPSPDFPPPPPESSLVFPP 929
Query: 59 PQPRALSPPRFCPPPLSS 76
P P + P PPP +S
Sbjct: 930 PPPSPVPAPPPPPPPTAS 947
Score = 27.7 bits (60), Expect = 2.3
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 24 PTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCPPPLSSLCTSPP 82
PT P + + L +P V P P + P + P F PPP S PP
Sbjct: 873 PTPPA--MESQPLKPVPANVAPQSPPAVKAKPKWQPSSIPVPSPDFPPPPPESSLVFPP 929
Score = 27.3 bits (59), Expect = 3.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 27 PLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCPPP 73
P ++P + + PP P PG + A P P A S P+F PP
Sbjct: 699 PQILVPPNGVVPPPPPPPPPPTPGS-AMAQLKPAPCAPSLPQFSAPP 744
Score = 25.8 bits (55), Expect = 8.7
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
Query: 24 PTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSP---------PRFCPPPL 74
P P + +P P PP P + + P P LSP +F PPP
Sbjct: 817 PAFPASYIPPS--PPTPPVPVPPPTLPKQQSFCAKPPPSPLSPVPSVVKQIASQFPPPPT 874
Query: 75 SSLCTSPPWLPL 86
S P P+
Sbjct: 875 PPAMESQPLKPV 886
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 37.0 bits (84), Expect = 0.004
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 5 PTGTAQRPRPGRTLRVTTLPTA-------PLAILPNHSLPKIPPTVTPHDNPGRLSAAAP 57
P+ + P P + V + PT PL P+ + + P V P +SAA P
Sbjct: 824 PSPASPSPEPPVSKPVASSPTEQVPSQEMPLLARPSPPVQSVSPAVP---TPPSMSAALP 880
Query: 58 APQPRALSPPRFCPPPLSSLCTSPPWLPLS 87
P PP PPPL PP LPLS
Sbjct: 881 FPAGGLGMPPSLPPPPL-----QPPSLPLS 905
Score = 30.4 bits (67), Expect = 0.35
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 14 PGRTLRVTTLPTAPLAILPN---HSLPKIPPTVTPHDNPGRLSAAAPAPQPRALS--PPR 68
P L+ +LP + +LP+ H P PH +P P P +S P
Sbjct: 893 PPPPLQPPSLPLSMGPVLPDPFTHYAPLPSWPCYPHVSPSGYPCLPPPPTVPLVSGTPGA 952
Query: 69 FCPPPLSSLCTSPPWLPLSP 88
+ PP S+ +PP P+SP
Sbjct: 953 YAVPPTCSVPWAPPPAPVSP 972
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 36.6 bits (83), Expect = 0.005
Identities = 36/104 (34%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 7 GTAQRPRP----GRTLRVTTLPTAPLAILPNHSLPKIPPTV-------TPHDNPGRLSAA 55
G Q PRP G R LP PL I P P+ PP P GR S
Sbjct: 322 GGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGPPPPGRGGPPPPPPPATGR-SGP 380
Query: 56 APAPQPRA----LSPPRFCPPPLSSLCTSPPWLPLSPELTVDAG 95
P P P A + PP PPP S P PL P L G
Sbjct: 381 LPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPPALVPAGG 424
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 36.6 bits (83), Expect = 0.005
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 20 VTTLPTAPLAILPNHSLPKIPPTVTPHDNP--GRLSAAAPAPQPRALSP----PRFCP-P 72
V LP P +LP +P PP V P + AP P ++P PR P P
Sbjct: 238 VPQLPRPP--VLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVP 295
Query: 73 PLSSLCTSPPWLPLSP 88
P + PPW P++P
Sbjct: 296 PWPPMAPVPPWPPMAP 311
Score = 33.1 bits (74), Expect = 0.054
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 12 PRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCP 71
P P R V P P+A +P + P P + PG A P P A PP
Sbjct: 251 PMPPRPPMVPMPPRPPIAPMPPMA-PVPPGSRMAPVPPGPRMAPVPPWPPMAPVPPW--- 306
Query: 72 PPLSSLCTSPPWLPLSP 88
PP++ + T PP P+ P
Sbjct: 307 PPMAPVPTGPPMAPVPP 323
Score = 33.1 bits (74), Expect = 0.054
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 19/88 (21%)
Query: 1 MSACPTGTAQRPRPGRTLRVTTLPTAPLAILPNHSLPKIPPTVTPHDNPGRLSAAAPAPQ 60
M+ PTG P P P P+A +P P P P PG A P
Sbjct: 309 MAPVPTGPPMAPVP---------PGPPMARVP----PGPPMARVP---PGPPMAPLPPGP 352
Query: 61 PRALSPPRFCPPPLSSLCTSPPWLPLSP 88
P A PP PP++ L PP PL P
Sbjct: 353 PMAPLPPG---PPMAPLPPGPPMAPLPP 377
>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
Length = 712
Score = 36.2 bits (82), Expect = 0.006
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 2 SACPTGTAQRPRP---------GRTLRVTTLPTA---PLAILPNHSLPKIPPTVTPHDNP 49
SA P+GT PRP G +LR T P + L I + ++P + +PH P
Sbjct: 169 SALPSGTRSLPRPIDGVSDWSQGCSLRSTGSPASLASNLEISQSPTMPFLSLHRSPH-GP 227
Query: 50 GRL-----SAAAPAPQPRALSPPRFCPPPLSSLCTSPPWLPLSP 88
+L ++ P P P P P S SPP LP SP
Sbjct: 228 SKLCDDPQASLVPEPVPGGCQEPEEMSWPPSGEIASPPELPSSP 271
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 9 AQRPRPGRTLRVTTLPTAPLAILPNHSLP---KIPPTVTPHDNPGRLSAAAPAPQPRALS 65
AQ+ PG+T T PT P + LP + P + P P PG SA P+ QP +
Sbjct: 451 AQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPG--SAKPPSQQPGSTK 508
Query: 66 PPRFCPPP 73
PP P P
Sbjct: 509 PPPQQPGP 516
Score = 26.9 bits (58), Expect = 3.9
Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 13/71 (18%)
Query: 31 LPNHSLPKI-------PPTVTPHDNPGRLSAAAPAPQPRALSPP------RFCPPPLSSL 77
LP+ S P I PP P + A P QP L+ P PP
Sbjct: 298 LPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPG 357
Query: 78 CTSPPWLPLSP 88
T PP PL P
Sbjct: 358 TTKPPAQPLGP 368
Score = 26.9 bits (58), Expect = 3.9
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 27 PLAILPNHS--LPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCPPPLSSLCTSPPWL 84
P + LP+ S + +P P L +A P P PP PPP PP
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPP-- 2429
Query: 85 PLSPELTV 92
P SP+ T+
Sbjct: 2430 PTSPKPTI 2437
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 9 AQRPRPGRTLRVTTLPTAPLAILPNHSLP---KIPPTVTPHDNPGRLSAAAPAPQPRALS 65
AQ+ PG+T T PT P + LP + P + P P PG SA P+ QP +
Sbjct: 451 AQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPG--SAKPPSQQPGSTK 508
Query: 66 PPRFCPPP 73
PP P P
Sbjct: 509 PPPQQPGP 516
Score = 26.9 bits (58), Expect = 3.9
Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 13/71 (18%)
Query: 31 LPNHSLPKI-------PPTVTPHDNPGRLSAAAPAPQPRALSPP------RFCPPPLSSL 77
LP+ S P I PP P + A P QP L+ P PP
Sbjct: 298 LPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPG 357
Query: 78 CTSPPWLPLSP 88
T PP PL P
Sbjct: 358 TTKPPAQPLGP 368
Score = 26.9 bits (58), Expect = 3.9
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 27 PLAILPNHS--LPKIPPTVTPHDNPGRLSAAAPAPQPRALSPPRFCPPPLSSLCTSPPWL 84
P + LP+ S + +P P L +A P P PP PPP PP
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPP-- 2429
Query: 85 PLSPELTV 92
P SP+ T+
Sbjct: 2430 PTSPKPTI 2437
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,446,072
Number of Sequences: 37866
Number of extensions: 484405
Number of successful extensions: 5160
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 518
Number of HSP's that attempted gapping in prelim test: 3309
Number of HSP's gapped (non-prelim): 1937
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.