Guide to the Human Genome
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Name: LOC100287358 Sequence: fasta or formatted (97aa) NCBI GI: 239747375
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {132aa} PREDICTED: hypothetical protein XP_002342116
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          4           2
 C cysteine            4.1          4           1
 D aspartate           5.2          5           1
 E glutamate           3.1          3           1
 F phenylalanine       2.1          2           1
 G glycine            11.3         11           1
 H histidine           5.2          5           1
 I isoleucine          7.2          7           2
 K lysine              1.0          1           1
 L leucine            16.5         16           3
 M methionine          2.1          2           1
 N asparagine          2.1          2           1
 P proline             2.1          2           1
 Q glutamine           8.2          8           2
 R arginine            1.0          1           1
 S serine             10.3         10           1
 T threonine           3.1          3           1
 V valine              8.2          8           1
 W tryptophan          1.0          1           1
 Y tyrosine            2.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293140          1.000   PREDICTED: hypothetical protein 
LOC100288649          1.000   PREDICTED: hypothetical protein XP_002342096 
BRD8                  0.011   bromodomain containing 8 isoform 2 
SDPR                  0.006   serum deprivation response protein 
SLC34A1               0.006   solute carrier family 34 (sodium phosphate), member...
LOC100291827          0.006   PREDICTED: hypothetical protein XP_002344924 
LOC100289691          0.006   PREDICTED: hypothetical protein XP_002347688 
LOC100288546          0.006   PREDICTED: hypothetical protein XP_002343503 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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