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Search of human proteins with 239741081
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741081 PREDICTED: hypothetical protein XP_002342086 [Homo
sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741081 PREDICTED: hypothetical protein XP_002342086 [Homo ... 325 7e-90
gi|239752719 PREDICTED: hypothetical protein [Homo sapiens] 243 4e-65
gi|239753301 PREDICTED: hypothetical protein [Homo sapiens] 233 6e-62
gi|8393264 delta-like 3 protein isoform 1 precursor [Homo sapiens] 30 0.83
gi|45243561 delta-like 3 protein isoform 2 precursor [Homo sapiens] 30 0.83
gi|29789407 ring finger protein 149 [Homo sapiens] 29 1.9
gi|40217829 G protein-coupled receptor 68 [Homo sapiens] 29 1.9
gi|239756270 PREDICTED: StAR-related lipid transfer (START) doma... 28 2.4
gi|239750815 PREDICTED: StAR-related lipid transfer (START) doma... 28 2.4
gi|239745175 PREDICTED: StAR-related lipid transfer (START) doma... 28 2.4
gi|239750418 PREDICTED: hypothetical protein XP_002347389 [Homo ... 28 3.2
gi|239744720 PREDICTED: hypothetical protein XP_002343252 [Homo ... 28 3.2
gi|219842343 glutamate receptor, metabotropic 5 isoform a precur... 28 4.1
gi|4504143 glutamate receptor, metabotropic 5 isoform b precurso... 28 4.1
gi|8051586 ficolin 2 isoform b precursor [Homo sapiens] 28 4.1
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 27 5.4
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 27 5.4
gi|4504487 histidine rich calcium binding protein precursor [Hom... 27 5.4
gi|46094009 melanoma inhibitory activity 2 [Homo sapiens] 27 5.4
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 27 5.4
gi|239752933 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|239747485 PREDICTED: hypothetical protein XP_002347546 [Homo ... 27 7.0
gi|239741357 PREDICTED: hypothetical protein XP_002342183 [Homo ... 27 7.0
gi|167830411 natriuretic peptide receptor 1 [Homo sapiens] 27 9.2
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 27 9.2
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 27 9.2
gi|45593142 kelch repeat and BTB (POZ) domain containing 5 [Homo... 27 9.2
>gi|239741081 PREDICTED: hypothetical protein XP_002342086 [Homo
sapiens]
Length = 155
Score = 325 bits (834), Expect = 7e-90
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MVTSKGQPRTHAQVAACLAKASPLLGCQLAHGRPEMQLGPTTQTLLGLRTVGSGWGLNIS 60
MVTSKGQPRTHAQVAACLAKASPLLGCQLAHGRPEMQLGPTTQTLLGLRTVGSGWGLNIS
Sbjct: 1 MVTSKGQPRTHAQVAACLAKASPLLGCQLAHGRPEMQLGPTTQTLLGLRTVGSGWGLNIS 60
Query: 61 FGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQPEE 120
FGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQPEE
Sbjct: 61 FGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQPEE 120
Query: 121 EELWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 155
EELWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW
Sbjct: 121 EELWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 155
>gi|239752719 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 243 bits (621), Expect = 4e-65
Identities = 127/159 (79%), Positives = 129/159 (81%), Gaps = 5/159 (3%)
Query: 1 MVTSKGQPRTHAQVAACLAKASPLLGCQLAHGRP----EMQLGPTTQTLLGLRTVGSGWG 56
MV SKGQ RTHAQV A P A P + G + LLGLRTVGSGWG
Sbjct: 1 MVNSKGQLRTHAQVHKW-QHAWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRTVGSGWG 59
Query: 57 LNISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWG 116
LNISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWG
Sbjct: 60 LNISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWG 119
Query: 117 QPEEEELWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 155
QPEEE LWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW
Sbjct: 120 QPEEEGLWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 158
>gi|239753301 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 233 bits (593), Expect = 6e-62
Identities = 110/117 (94%), Positives = 112/117 (95%)
Query: 39 GPTTQTLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTL 98
G + LLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGL+SSLPQMGWALTL
Sbjct: 75 GLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLKSSLPQMGWALTL 134
Query: 99 RELQMGELGAPQASGHWGQPEEEELWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 155
RELQMGELGAPQASGHWGQPEEE LWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW
Sbjct: 135 RELQMGELGAPQASGHWGQPEEEGLWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 191
>gi|8393264 delta-like 3 protein isoform 1 precursor [Homo sapiens]
Length = 618
Score = 30.0 bits (66), Expect = 0.83
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 19 AKASPLLGCQLAHGRPEMQLGPTTQTLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGA 78
A A P L G P+ L P LGL G + LL ++ H + G+
Sbjct: 473 ASALPAAPPGLRPGDPQRYLLPPA---LGLLVAAGVAGAAL---LLVHVRRRGHSQDAGS 526
Query: 79 GFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQPEE 120
L E S+ + AL Q G P +S W +PE+
Sbjct: 527 RLLAGTPEPSVHALPDALNNLRTQEGSGDGPSSSVDWNRPED 568
>gi|45243561 delta-like 3 protein isoform 2 precursor [Homo sapiens]
Length = 587
Score = 30.0 bits (66), Expect = 0.83
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 19 AKASPLLGCQLAHGRPEMQLGPTTQTLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGA 78
A A P L G P+ L P LGL G + LL ++ H + G+
Sbjct: 473 ASALPAAPPGLRPGDPQRYLLPPA---LGLLVAAGVAGAAL---LLVHVRRRGHSQDAGS 526
Query: 79 GFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQPEE 120
L E S+ + AL Q G P +S W +PE+
Sbjct: 527 RLLAGTPEPSVHALPDALNNLRTQEGSGDGPSSSVDWNRPED 568
>gi|29789407 ring finger protein 149 [Homo sapiens]
Length = 400
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 94 WALTLRELQMGELGAPQASGHWGQPEEEELWDGLEL--GQLPEAGLTPSSPDRGAKSE 149
W L R M +L +A G+WG+P + + E G+ P A L+ + PD E
Sbjct: 299 WLLDHRTCPMCKLDVIKALGYWGEPGDVQEMPAPESPPGRDPAANLSLALPDDDGSDE 356
>gi|40217829 G protein-coupled receptor 68 [Homo sapiens]
Length = 375
Score = 28.9 bits (63), Expect = 1.9
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 106 LGAPQASGHWG-QPEEEELWDGLELGQLPEAGLTPSSPDRG 145
LGAP+ASG G Q EE EL L +L A TP+SP G
Sbjct: 332 LGAPEASGKSGAQGEEPEL-----LTKLHPAFQTPNSPGSG 367
>gi|239756270 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 28.5 bits (62), Expect = 2.4
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 104 GELGAPQASGHWGQPEEEELWDGLELGQLPEAGLTPSSPDRGAKSECC 151
G+L P+ GH P+ ++W G E G + R + CC
Sbjct: 4334 GQLQFPENMGHTNLPDSRDVWIGDERGGHSAVRKNSAYSHRASLGSCC 4381
>gi|239750815 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 28.5 bits (62), Expect = 2.4
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 104 GELGAPQASGHWGQPEEEELWDGLELGQLPEAGLTPSSPDRGAKSECC 151
G+L P+ GH P+ ++W G E G + R + CC
Sbjct: 4334 GQLQFPENMGHTNLPDSRDVWIGDERGGHSAVRKNSAYSHRASLGSCC 4381
>gi|239745175 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 28.5 bits (62), Expect = 2.4
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 104 GELGAPQASGHWGQPEEEELWDGLELGQLPEAGLTPSSPDRGAKSECC 151
G+L P+ GH P+ ++W G E G + R + CC
Sbjct: 4334 GQLQFPENMGHTNLPDSRDVWIGDERGGHSAVRKNSAYSHRASLGSCC 4381
>gi|239750418 PREDICTED: hypothetical protein XP_002347389 [Homo
sapiens]
Length = 220
Score = 28.1 bits (61), Expect = 3.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 115 WGQPEEEELWDGLELGQLPEAGL 137
W + +E W GLELG+ PE L
Sbjct: 6 WSRVNQENNWTGLELGKEPETEL 28
>gi|239744720 PREDICTED: hypothetical protein XP_002343252 [Homo
sapiens]
Length = 220
Score = 28.1 bits (61), Expect = 3.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 115 WGQPEEEELWDGLELGQLPEAGL 137
W + +E W GLELG+ PE L
Sbjct: 6 WSRVNQENNWTGLELGKEPETEL 28
>gi|219842343 glutamate receptor, metabotropic 5 isoform a precursor
[Homo sapiens]
Length = 1212
Score = 27.7 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 2 VTSKGQPRTHAQVAACLAKASPLLGCQLAHGRPEMQ 37
VT QP AQ A A+ SP G + A +P+++
Sbjct: 1123 VTGGAQPAAGAQAAGDAARESPAAGPEAAAAKPDLE 1158
>gi|4504143 glutamate receptor, metabotropic 5 isoform b precursor
[Homo sapiens]
Length = 1180
Score = 27.7 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 2 VTSKGQPRTHAQVAACLAKASPLLGCQLAHGRPEMQ 37
VT QP AQ A A+ SP G + A +P+++
Sbjct: 1091 VTGGAQPAAGAQAAGDAARESPAAGPEAAAAKPDLE 1126
>gi|8051586 ficolin 2 isoform b precursor [Homo sapiens]
Length = 275
Score = 27.7 bits (60), Expect = 4.1
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 75 ERGAGFLGAG-LESSLPQMGWALTLRELQMGELGAPQASGHWGQP 118
+R G LGA L S M WAL + GE G P G G P
Sbjct: 4 DRAVGVLGAATLLLSFLGMAWALQAADTCPGERGPPGPPGKAGPP 48
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 27.3 bits (59), Expect = 5.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 90 PQMGWALTLRELQMGELGAPQASGHWGQPEEEELW 124
P G REL E P+ S G+P+E ++W
Sbjct: 373 PSNGLEKPARELNGSEAATPRDSPRPGKPDERDIW 407
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 27.3 bits (59), Expect = 5.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 90 PQMGWALTLRELQMGELGAPQASGHWGQPEEEELW 124
P G REL E P+ S G+P+E ++W
Sbjct: 373 PSNGLEKPARELNGSEAATPRDSPRPGKPDERDIW 407
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 27.3 bits (59), Expect = 5.4
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 99 RELQMGELGAPQASGHWGQPEEEELWDGLELGQLPEAGLTPSSPDR-----GAKSE 149
R + E+GAP + H + EEEE +GLE + P + P+ DR GA SE
Sbjct: 551 RREERAEVGAPLSPDHSEEEEEEE--EGLEEDE-PRFTIIPNPLDRREEAGGASSE 603
>gi|46094009 melanoma inhibitory activity 2 [Homo sapiens]
Length = 654
Score = 27.3 bits (59), Expect = 5.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 97 TLRELQMGELGAPQASGHWGQPE--EEELWDGLELGQLPEAGLTPSSPDRGAK 147
TL E Q+ L AP+ G + + EE + + +E ++PE + PSS G K
Sbjct: 172 TLFEDQVPALEAPEDIGSTSESKDWEEVVVESMEQDRIPEVHVPPSSAVSGVK 224
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 27.3 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 118 PEEEEL-WDGLELGQLPEAGLTPSSPDRGAK 147
PEE+EL + GLE + P GL P+ G K
Sbjct: 324 PEEQELDFQGLEEEEEPSEGLEEEGPEAGGK 354
>gi|239752933 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 26.9 bits (58), Expect = 7.0
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 21 ASPLLGCQLAHGR-------PEMQLGPTTQTLLGLRTVGSGW 55
A+P L+H R P+ Q G T LR+VGSGW
Sbjct: 26 AAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGW 67
>gi|239747485 PREDICTED: hypothetical protein XP_002347546 [Homo
sapiens]
Length = 180
Score = 26.9 bits (58), Expect = 7.0
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 21 ASPLLGCQLAHGR-------PEMQLGPTTQTLLGLRTVGSGW 55
A+P L+H R P+ Q G T LR+VGSGW
Sbjct: 3 AAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGW 44
>gi|239741357 PREDICTED: hypothetical protein XP_002342183 [Homo
sapiens]
Length = 180
Score = 26.9 bits (58), Expect = 7.0
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 21 ASPLLGCQLAHGR-------PEMQLGPTTQTLLGLRTVGSGW 55
A+P L+H R P+ Q G T LR+VGSGW
Sbjct: 3 AAPTEATALSHSRSPQLPQPPQEQPGGLTTASAHLRSVGSGW 44
>gi|167830411 natriuretic peptide receptor 1 [Homo sapiens]
Length = 1061
Score = 26.6 bits (57), Expect = 9.2
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 19 AKASPLLGCQLAH--GRPEMQLGPTTQTLLGLRTVGSGWGLNISFGLLTQSMKQDHGPER 76
A+ P + LA RP++ G T +T+LG G + + L +K +H P
Sbjct: 53 ARVGPAVELALAQVKARPDLLPGWTVRTVLGSSENALGVCSDTAAPLAAVDLKWEHNP-- 110
Query: 77 GAGFLGAGLESSLPQMGWALTLRELQMGELGAP 109
A FLG G + +G + + GAP
Sbjct: 111 -AVFLGPGCVYAAAPVGRFTAHWRVPLLTAGAP 142
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 26.6 bits (57), Expect = 9.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 117 QPEEEELWDGLELGQLPEAGLTPSSP 142
QP EE L QLP GL+P SP
Sbjct: 290 QPPAEEPPHPLTYSQLPRVGLSPDSP 315
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 26.6 bits (57), Expect = 9.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 117 QPEEEELWDGLELGQLPEAGLTPSSP 142
QP EE L QLP GL+P SP
Sbjct: 372 QPPAEEPPHPLTYSQLPRVGLSPDSP 397
>gi|45593142 kelch repeat and BTB (POZ) domain containing 5 [Homo
sapiens]
Length = 621
Score = 26.6 bits (57), Expect = 9.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 74 PERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEELWDGL 127
P+ + L +L +G TL E + GEL + + W EEE+ W+G+
Sbjct: 544 PQERSSLSLVSLVGTLYAIGGFATL-ETESGELVPTELNDIWRYNEEEKKWEGV 596
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,201,918
Number of Sequences: 37866
Number of extensions: 359129
Number of successful extensions: 713
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 28
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.