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Search of human proteins with 239741005
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741005 PREDICTED: hypothetical protein XP_002342062 [Homo
sapiens]
(85 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752661 PREDICTED: hypothetical protein [Homo sapiens] 191 8e-50
gi|239741005 PREDICTED: hypothetical protein XP_002342062 [Homo ... 191 8e-50
gi|239755499 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239750031 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo ... 31 0.24
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi... 30 0.54
gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens] 29 0.91
gi|74315997 l-myc-1 proto-oncogene isoform 1 [Homo sapiens] 29 0.91
gi|74315995 l-myc-1 proto-oncogene isoform 1 [Homo sapiens] 29 0.91
gi|239750790 PREDICTED: hypothetical protein XP_002347558 [Homo ... 28 2.0
gi|239745150 PREDICTED: hypothetical protein XP_002343411 [Homo ... 28 2.0
gi|239745134 PREDICTED: hypothetical protein XP_002343399 [Homo ... 28 2.0
gi|239745119 PREDICTED: hypothetical protein XP_002343397 [Homo ... 28 2.0
gi|239745116 PREDICTED: hypothetical protein XP_002343387 [Homo ... 28 2.0
gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo ... 27 2.7
gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Hom... 27 4.5
gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Hom... 27 4.5
gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo ... 27 4.5
gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo sap... 27 4.5
gi|24497568 hyaluronoglucosaminidase 1 isoform 3 [Homo sapiens] 26 5.9
gi|24497566 hyaluronoglucosaminidase 1 isoform 2 [Homo sapiens] 26 5.9
gi|24497564 hyaluronoglucosaminidase 1 isoform 1 [Homo sapiens] 26 5.9
gi|24497562 hyaluronoglucosaminidase 1 isoform 1 [Homo sapiens] 26 5.9
gi|6224976 hyaluronoglucosaminidase 1 isoform 1 [Homo sapiens] 26 5.9
gi|239757875 PREDICTED: similar to L-myc-2 protein, partial [Hom... 26 5.9
gi|239749338 PREDICTED: hypothetical protein XP_002346998 [Homo ... 26 5.9
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 26 5.9
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ... 26 7.7
gi|156142186 cytokine receptor-like factor 3 [Homo sapiens] 26 7.7
gi|168229226 hypothetical protein LOC401399 [Homo sapiens] 26 7.7
>gi|239752661 PREDICTED: hypothetical protein [Homo sapiens]
Length = 85
Score = 191 bits (486), Expect = 8e-50
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MPGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGLTGSWLQ 60
MPGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGLTGSWLQ
Sbjct: 1 MPGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGLTGSWLQ 60
Query: 61 TLRRHVQASALRGYGLPQARSYIPL 85
TLRRHVQASALRGYGLPQARSYIPL
Sbjct: 61 TLRRHVQASALRGYGLPQARSYIPL 85
>gi|239741005 PREDICTED: hypothetical protein XP_002342062 [Homo
sapiens]
Length = 85
Score = 191 bits (486), Expect = 8e-50
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MPGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGLTGSWLQ 60
MPGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGLTGSWLQ
Sbjct: 1 MPGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGLTGSWLQ 60
Query: 61 TLRRHVQASALRGYGLPQARSYIPL 85
TLRRHVQASALRGYGLPQARSYIPL
Sbjct: 61 TLRRHVQASALRGYGLPQARSYIPL 85
>gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]
Length = 516
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 2 PGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGL 54
P A+ A WG S EC+ GP Q P C+G + S+W GL
Sbjct: 430 PSAAVAASWGHMASEECQQQGHHGPSQQP-------CQGASS---SKWAGLGL 472
>gi|239750031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 2 PGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGL 54
P A+ A WG S EC+ GP Q P C+G + S+W GL
Sbjct: 270 PSAAVAASWGHMASEECQQQGHHGPSQQP-------CQGASS---SKWAGLGL 312
>gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo
sapiens]
Length = 356
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 2 PGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGL 54
P A+ A WG S EC+ GP Q P C+G + S+W GL
Sbjct: 270 PSAAVAASWGHMASEECQQQGHHGPSQQP-------CQGASS---SKWAGLGL 312
>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
Length = 267
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 14 GSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWG---LTGSWLQTLRRHVQASA 70
G P K H+ P P+ P + +A G WG L G WL+ L + S
Sbjct: 14 GFPFQKTSHY--PTPPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLHPGAEGSQ 71
Query: 71 LRGYGLPQARSYIPL 85
R G PQ + + L
Sbjct: 72 TRPSGAPQFTTLLAL 86
>gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens]
Length = 206
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 26 PRQAPQPPVHRGCRGDDAEGRSRWRTWG 53
P P P GC GD+AE R + WG
Sbjct: 56 PGIGPPEPWPGGCTGDEAESRGHSKGWG 83
>gi|74315997 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]
Length = 364
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 26 PRQAPQPPVHRGCRGDDAEGRSRWRTWG 53
P P P GC GD+AE R + WG
Sbjct: 56 PGIGPPEPWPGGCTGDEAESRGHSKGWG 83
>gi|74315995 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]
Length = 364
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 26 PRQAPQPPVHRGCRGDDAEGRSRWRTWG 53
P P P GC GD+AE R + WG
Sbjct: 56 PGIGPPEPWPGGCTGDEAESRGHSKGWG 83
>gi|239750790 PREDICTED: hypothetical protein XP_002347558 [Homo
sapiens]
Length = 175
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 26 PRQAPQ-------PPVHRGCRGDDAEGRSRWRTWGLTGSWLQTLRRHVQASALRGYGL 76
PRQ+PQ P R G + + G GS LQ R H + S+L +GL
Sbjct: 47 PRQSPQGDFGWVSPGASRSITGPSSPAAPSLISLGSLGSHLQGARPHPRQSSLGDFGL 104
>gi|239745150 PREDICTED: hypothetical protein XP_002343411 [Homo
sapiens]
Length = 175
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 26 PRQAPQ-------PPVHRGCRGDDAEGRSRWRTWGLTGSWLQTLRRHVQASALRGYGL 76
PRQ+PQ P R G + + G GS LQ R H + S+L +GL
Sbjct: 47 PRQSPQGDFGWVSPGASRSITGPSSPAAPSLISLGSLGSHLQGARPHPRQSSLGDFGL 104
>gi|239745134 PREDICTED: hypothetical protein XP_002343399 [Homo
sapiens]
Length = 175
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 26 PRQAPQ-------PPVHRGCRGDDAEGRSRWRTWGLTGSWLQTLRRHVQASALRGYGL 76
PRQ+PQ P R G + + G GS LQ R H + S+L +GL
Sbjct: 47 PRQSPQGDFGWVSPGASRSITGPSSPAAPSLISLGSLGSHLQGARPHPRQSSLGDFGL 104
>gi|239745119 PREDICTED: hypothetical protein XP_002343397 [Homo
sapiens]
Length = 175
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 26 PRQAPQ-------PPVHRGCRGDDAEGRSRWRTWGLTGSWLQTLRRHVQASALRGYGL 76
PRQ+PQ P R G + + G GS LQ R H + S+L +GL
Sbjct: 47 PRQSPQGDFGWVSPGASRSITGPSSPAAPSLISLGSLGSHLQGARPHPRQSSLGDFGL 104
>gi|239745116 PREDICTED: hypothetical protein XP_002343387 [Homo
sapiens]
Length = 175
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 26 PRQAPQ-------PPVHRGCRGDDAEGRSRWRTWGLTGSWLQTLRRHVQASALRGYGL 76
PRQ+PQ P R G + + G GS LQ R H + S+L +GL
Sbjct: 47 PRQSPQGDFGWVSPGASRSITGPSSPAAPSLISLGSLGSHLQGARPHPRQSSLGDFGL 104
>gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo
sapiens]
Length = 368
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 2 PGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWR 50
P A+ G GSPE L +GP P+P RG R + R WR
Sbjct: 266 PSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSR---SRRRYLWR 311
>gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 34 VHRGCRGDDAEGRSRW--RTWGLTGSWLQTLRRHVQASAL 71
VH CRG + + W R W L S +R VQ + L
Sbjct: 397 VHESCRGQVSRAHASWKPRAWVLEASVQSAVRGGVQRAIL 436
>gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 34 VHRGCRGDDAEGRSRW--RTWGLTGSWLQTLRRHVQASAL 71
VH CRG + + W R W L S +R VQ + L
Sbjct: 397 VHESCRGQVSRAHASWKPRAWVLEASVQSAVRGGVQRAIL 436
>gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo
sapiens]
Length = 230
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 6 AWARWGDFGSPECKLYHFEGPRQAPQP 32
AWARW P+C E PR+ P+P
Sbjct: 173 AWARWRTPVIPKCWDSRREPPRRDPRP 199
>gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo
sapiens]
Length = 697
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 34 VHRGCRGDDAEGRSRW--RTWGLTGSWLQTLRRHVQASAL 71
VH CRG + + W R W L S +R VQ + L
Sbjct: 397 VHESCRGQVSRAHASWKPRAWVLEASVQSAVRGGVQRAIL 436
>gi|24497568 hyaluronoglucosaminidase 1 isoform 3 [Homo sapiens]
Length = 253
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 10 WGDFGSPECKLYHFEGPRQAPQPP 33
WG +G P+C Y F P Q P
Sbjct: 17 WGFYGFPDCYNYDFLSPNYTGQCP 40
>gi|24497566 hyaluronoglucosaminidase 1 isoform 2 [Homo sapiens]
Length = 405
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 10 WGDFGSPECKLYHFEGPRQAPQPP 33
WG +G P+C Y F P Q P
Sbjct: 199 WGFYGFPDCYNYDFLSPNYTGQCP 222
>gi|24497564 hyaluronoglucosaminidase 1 isoform 1 [Homo sapiens]
Length = 435
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 10 WGDFGSPECKLYHFEGPRQAPQPP 33
WG +G P+C Y F P Q P
Sbjct: 199 WGFYGFPDCYNYDFLSPNYTGQCP 222
>gi|24497562 hyaluronoglucosaminidase 1 isoform 1 [Homo sapiens]
Length = 435
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 10 WGDFGSPECKLYHFEGPRQAPQPP 33
WG +G P+C Y F P Q P
Sbjct: 199 WGFYGFPDCYNYDFLSPNYTGQCP 222
>gi|6224976 hyaluronoglucosaminidase 1 isoform 1 [Homo sapiens]
Length = 435
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 10 WGDFGSPECKLYHFEGPRQAPQPP 33
WG +G P+C Y F P Q P
Sbjct: 199 WGFYGFPDCYNYDFLSPNYTGQCP 222
>gi|239757875 PREDICTED: similar to L-myc-2 protein, partial [Homo
sapiens]
Length = 349
Score = 26.2 bits (56), Expect = 5.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 37 GCRGDDAEGRSRWRTW 52
GC GD+ E + W+ W
Sbjct: 121 GCAGDETESQDYWKAW 136
>gi|239749338 PREDICTED: hypothetical protein XP_002346998 [Homo
sapiens]
Length = 230
Score = 26.2 bits (56), Expect = 5.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 51 TWGLTGSWLQTLR 63
TWG+TG+W QT R
Sbjct: 214 TWGVTGTWHQTWR 226
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 25 GPRQAPQPPVHRGCRGDDAEGR 46
GP+ P PP RG +GD+ G+
Sbjct: 191 GPQGEPGPPGDRGLKGDNGVGQ 212
>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
sapiens]
Length = 190
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 14/48 (29%)
Query: 4 ASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRT 51
A++WAR G+ G+ GP P R C G+ + GR R R+
Sbjct: 45 ATSWARTGESGA---------GPS-----PAWRRCAGEASRGRQRARS 78
>gi|156142186 cytokine receptor-like factor 3 [Homo sapiens]
Length = 442
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 39 RGDDAEGRSRWRTWGLTGSWLQTLRRHVQASALRGYGLPQARS 81
RGD GR W W + TL H + GY L R+
Sbjct: 252 RGD---GRQEWSPWSVPQIGHSTLVPHEWTAGFEGYSLSSRRN 291
>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
Length = 899
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 14 GSPEC--------KLYHFEG-PRQAPQPPVHRGCRGDDAEGRSRW 49
G PEC +L EG P +AP+P D AE R+RW
Sbjct: 315 GQPECGPGSCSVGELPEREGQPPEAPRPLFFLTLEADWAEARARW 359
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,562,891
Number of Sequences: 37866
Number of extensions: 207435
Number of successful extensions: 560
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 33
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.