Guide to the Human Genome
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Name: HYAL1 Sequence: fasta or formatted (435aa) NCBI GI: 24497564
Description:

hyaluronoglucosaminidase 1 isoform 1

Referenced in:

Lysosomes and Related Organelles
N-Acetyl Sugars and Hyaluronan

Other entries for this name:
alt mRNA [435aa] hyaluronoglucosaminidase 1 isoform 1
alt prot [405aa] hyaluronoglucosaminidase 1 isoform 2
alt prot [253aa] hyaluronoglucosaminidase 1 isoform 3
alt prot [176aa] hyaluronoglucosaminidase 1 isoform 5
alt mRNA [435aa] hyaluronoglucosaminidase 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         46           2
 C cysteine            2.5         11           1
 D aspartate           4.6         20           1
 E glutamate           3.4         15           1
 F phenylalanine       4.6         20           1
 G glycine             8.0         35           3
 H histidine           2.1          9           1
 I isoleucine          3.0         13           1
 K lysine              1.6          7           1
 L leucine            10.6         46           4
 M methionine          2.1          9           1
 N asparagine          3.2         14           1
 P proline             7.6         33           1
 Q glutamine           6.4         28           1
 R arginine            5.7         25           2
 S serine              5.5         24           2
 T threonine           5.3         23           2
 V valine              5.7         25           2
 W tryptophan          3.7         16           1
 Y tyrosine            3.7         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hyaluronoglucosaminidase 1 isoform 1 
HYAL1                 1.000   hyaluronoglucosaminidase 1 isoform 1 
HYAL1                 1.000   hyaluronoglucosaminidase 1 isoform 1 
HYAL1                 0.915   hyaluronoglucosaminidase 1 isoform 2 
HYAL1                 0.570   hyaluronoglucosaminidase 1 isoform 3 
HYAL1                 0.385   hyaluronoglucosaminidase 1 isoform 5 
HYAL4                 0.360   hyaluronoglucosaminidase 4 
HYAL2                 0.348   hyaluronoglucosaminidase 2 
HYAL2                 0.348   hyaluronoglucosaminidase 2 
SPAM1                 0.331   sperm adhesion molecule 1 isoform 1 
SPAM1                 0.331   sperm adhesion molecule 1 isoform 2 
HYAL3                 0.319   hyaluronoglucosaminidase 3 
SLIT2                 0.009   slit homolog 2 
DLK1                  0.007   delta-like 1 homolog 
STARD9                0.007   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.007   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.007   PREDICTED: StAR-related lipid transfer (START) doma...
NOTCH1                0.006   notch1 preproprotein 
NOTCH4                0.006   notch4 preproprotein 
CRB1                  0.006   crumbs homolog 1 precursor 
PCNXL3                0.004   pecanex-like 3 
CRB2                  0.004   crumbs homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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