Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239740995
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740995 PREDICTED: hypothetical protein XP_002342058 [Homo
sapiens]
(361 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740995 PREDICTED: hypothetical protein XP_002342058 [Homo ... 723 0.0
gi|14670354 general transcription factor II, i isoform 3 [Homo s... 113 2e-25
gi|14670352 general transcription factor II, i isoform 2 [Homo s... 113 2e-25
gi|14670350 general transcription factor II, i isoform 1 [Homo s... 113 2e-25
gi|169881252 general transcription factor II, i isoform 4 [Homo ... 113 2e-25
gi|239753114 PREDICTED: hypothetical protein [Homo sapiens] 37 0.036
gi|18765741 snail 1 homolog [Homo sapiens] 35 0.10
gi|4758274 erythrocyte membrane protein band 4.1 (elliptocytosis... 35 0.10
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s... 33 0.30
gi|71164892 gremlin 2 precursor [Homo sapiens] 33 0.30
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 33 0.40
gi|14917115 keratin 31 [Homo sapiens] 33 0.52
gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens] 33 0.52
gi|50593108 5' nucleotidase, cytosolic IB isoform 2 [Homo sapiens] 33 0.52
gi|4505913 PMS2 postmeiotic segregation increased 2 isoform a [H... 32 0.68
gi|7661878 kinesin family member 14 [Homo sapiens] 31 1.5
gi|117553584 adaptor-related protein complex 3, delta 1 subunit ... 31 2.0
gi|5730009 ret finger protein [Homo sapiens] 31 2.0
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ... 30 3.4
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 30 3.4
gi|20357552 cortactin isoform a [Homo sapiens] 30 3.4
gi|20357556 cortactin isoform b [Homo sapiens] 30 3.4
gi|16933557 dachsous 1 precursor [Homo sapiens] 30 4.4
gi|134276943 separase [Homo sapiens] 29 5.7
gi|50980301 myosin phosphatase-Rho interacting protein isoform 2... 29 5.7
gi|50980307 myosin phosphatase-Rho interacting protein isoform 1... 29 5.7
gi|110349721 titin isoform novex-3 [Homo sapiens] 29 7.5
gi|110349719 titin isoform N2-A [Homo sapiens] 29 7.5
gi|110349717 titin isoform novex-2 [Homo sapiens] 29 7.5
gi|110349713 titin isoform novex-1 [Homo sapiens] 29 7.5
>gi|239740995 PREDICTED: hypothetical protein XP_002342058 [Homo
sapiens]
Length = 361
Score = 723 bits (1866), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MAVPAPSQVCASLLIAAFQAGPCLAYLCSCSVGIPPSLSCSRSGPCTPFFTSSAKLPLKS 60
MAVPAPSQVCASLLIAAFQAGPCLAYLCSCSVGIPPSLSCSRSGPCTPFFTSSAKLPLKS
Sbjct: 1 MAVPAPSQVCASLLIAAFQAGPCLAYLCSCSVGIPPSLSCSRSGPCTPFFTSSAKLPLKS 60
Query: 61 SDEASGRPGLQLALAIEELLRDSAIGCTFCDRCRPVGAQRLLAQSLALAAPGAEDREVVK 120
SDEASGRPGLQLALAIEELLRDSAIGCTFCDRCRPVGAQRLLAQSLALAAPGAEDREVVK
Sbjct: 61 SDEASGRPGLQLALAIEELLRDSAIGCTFCDRCRPVGAQRLLAQSLALAAPGAEDREVVK 120
Query: 121 LLLVAYVRRRPGRSLATQNCQLSSRLHPARPPVGSVRSCALLEEPAAPTASSDWLCVTVG 180
LLLVAYVRRRPGRSLATQNCQLSSRLHPARPPVGSVRSCALLEEPAAPTASSDWLCVTVG
Sbjct: 121 LLLVAYVRRRPGRSLATQNCQLSSRLHPARPPVGSVRSCALLEEPAAPTASSDWLCVTVG 180
Query: 181 LRRRAQRQQAKALVSSRLLEAFSLSLKVSLDEHRKTKTNEPPQPPVPEPANAGERKMREF 240
LRRRAQRQQAKALVSSRLLEAFSLSLKVSLDEHRKTKTNEPPQPPVPEPANAGERKMREF
Sbjct: 181 LRRRAQRQQAKALVSSRLLEAFSLSLKVSLDEHRKTKTNEPPQPPVPEPANAGERKMREF 240
Query: 241 NSEKWNHRIADLRKQTEELSERKYGMSKLEKSCNLMFMGVYTVELLFIMGVPWTSPGLPA 300
NSEKWNHRIADLRKQTEELSERKYGMSKLEKSCNLMFMGVYTVELLFIMGVPWTSPGLPA
Sbjct: 241 NSEKWNHRIADLRKQTEELSERKYGMSKLEKSCNLMFMGVYTVELLFIMGVPWTSPGLPA 300
Query: 301 SHAILTCFSLHELMNSTGEDLQLDKSTLSARAVKAKGPVMIPYPFFQSHVEDFYAEALPK 360
SHAILTCFSLHELMNSTGEDLQLDKSTLSARAVKAKGPVMIPYPFFQSHVEDFYAEALPK
Sbjct: 301 SHAILTCFSLHELMNSTGEDLQLDKSTLSARAVKAKGPVMIPYPFFQSHVEDFYAEALPK 360
Query: 361 P 361
P
Sbjct: 361 P 361
>gi|14670354 general transcription factor II, i isoform 3 [Homo
sapiens]
Length = 977
Score = 113 bits (283), Expect = 2e-25
Identities = 76/187 (40%), Positives = 94/187 (50%), Gaps = 40/187 (21%)
Query: 214 RKTKTNEPPQPPVPEPANAGERKMREFNSEKWNHRIADLRKQTEELSERKYGMSKLEKSC 273
++ K NE PQPPVPEPANAG+RK+REFN EKWN RI DLRKQ EEL ERKY + K
Sbjct: 302 KRPKANELPQPPVPEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGP 361
Query: 274 NLMFMGVYT--VELLFIMGVPWTSP-------GLPASHAILTC-------FSLHELMNST 317
+ ++ VE L++ G+P P G+P IL HEL+NST
Sbjct: 362 VTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKKHELLNST 421
Query: 318 GEDLQLDKSTLS------ARAVKAKGPV------------------MIPYPFFQSHVEDF 353
EDLQLDK AR K + V +PY F++H D
Sbjct: 422 REDLQLDKPASGVKEEWYARITKLRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDL 481
Query: 354 YAEALPK 360
Y E LP+
Sbjct: 482 YVEGLPE 488
Score = 31.6 bits (70), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 238 REFNSEKWNHRIADLRKQTEELSERKYG 265
REF+ E WN +I DL+++ E L K G
Sbjct: 698 REFSFEAWNAKITDLKQKVENLFNEKCG 725
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 332 AVKAKGPVMIPYPFFQSHVEDFYAEALPK 360
A+ K V +P+ F+S EDFY E LP+
Sbjct: 727 ALGLKQAVKVPFALFESFPEDFYVEGLPE 755
Score = 30.0 bits (66), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 330 ARAVKAKGPVMIPYPFFQSHVEDFYAEALPK 360
A+A+ V +PYP F+S+ E Y E LP+
Sbjct: 563 AQALGLTEAVKVPYPVFESNPEFLYVEGLPE 593
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 243 EKWNHRIADLRKQTEELSERKY----GMSKLEKSCNLMFMGVYTVELLFIMGVP 292
E WN RI LRKQ EE+ K+ G+++ K +F E L++ G+P
Sbjct: 541 EDWNVRITKLRKQVEEIFNLKFAQALGLTEAVKVPYPVFES--NPEFLYVEGLP 592
>gi|14670352 general transcription factor II, i isoform 2 [Homo
sapiens]
Length = 978
Score = 113 bits (283), Expect = 2e-25
Identities = 76/187 (40%), Positives = 94/187 (50%), Gaps = 40/187 (21%)
Query: 214 RKTKTNEPPQPPVPEPANAGERKMREFNSEKWNHRIADLRKQTEELSERKYGMSKLEKSC 273
++ K NE PQPPVPEPANAG+RK+REFN EKWN RI DLRKQ EEL ERKY + K
Sbjct: 303 KRPKANELPQPPVPEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGP 362
Query: 274 NLMFMGVYT--VELLFIMGVPWTSP-------GLPASHAILTC-------FSLHELMNST 317
+ ++ VE L++ G+P P G+P IL HEL+NST
Sbjct: 363 VTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKKHELLNST 422
Query: 318 GEDLQLDKSTLS------ARAVKAKGPV------------------MIPYPFFQSHVEDF 353
EDLQLDK AR K + V +PY F++H D
Sbjct: 423 REDLQLDKPASGVKEEWYARITKLRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDL 482
Query: 354 YAEALPK 360
Y E LP+
Sbjct: 483 YVEGLPE 489
Score = 31.6 bits (70), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 238 REFNSEKWNHRIADLRKQTEELSERKYG 265
REF+ E WN +I DL+++ E L K G
Sbjct: 699 REFSFEAWNAKITDLKQKVENLFNEKCG 726
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 332 AVKAKGPVMIPYPFFQSHVEDFYAEALPK 360
A+ K V +P+ F+S EDFY E LP+
Sbjct: 728 ALGLKQAVKVPFALFESFPEDFYVEGLPE 756
Score = 30.0 bits (66), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 330 ARAVKAKGPVMIPYPFFQSHVEDFYAEALPK 360
A+A+ V +PYP F+S+ E Y E LP+
Sbjct: 564 AQALGLTEAVKVPYPVFESNPEFLYVEGLPE 594
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 243 EKWNHRIADLRKQTEELSERKY----GMSKLEKSCNLMFMGVYTVELLFIMGVP 292
E WN RI LRKQ EE+ K+ G+++ K +F E L++ G+P
Sbjct: 542 EDWNVRITKLRKQVEEIFNLKFAQALGLTEAVKVPYPVFES--NPEFLYVEGLP 593
>gi|14670350 general transcription factor II, i isoform 1 [Homo
sapiens]
Length = 998
Score = 113 bits (283), Expect = 2e-25
Identities = 76/187 (40%), Positives = 94/187 (50%), Gaps = 40/187 (21%)
Query: 214 RKTKTNEPPQPPVPEPANAGERKMREFNSEKWNHRIADLRKQTEELSERKYGMSKLEKSC 273
++ K NE PQPPVPEPANAG+RK+REFN EKWN RI DLRKQ EEL ERKY + K
Sbjct: 323 KRPKANELPQPPVPEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGP 382
Query: 274 NLMFMGVYT--VELLFIMGVPWTSP-------GLPASHAILTC-------FSLHELMNST 317
+ ++ VE L++ G+P P G+P IL HEL+NST
Sbjct: 383 VTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKKHELLNST 442
Query: 318 GEDLQLDKSTLS------ARAVKAKGPV------------------MIPYPFFQSHVEDF 353
EDLQLDK AR K + V +PY F++H D
Sbjct: 443 REDLQLDKPASGVKEEWYARITKLRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDL 502
Query: 354 YAEALPK 360
Y E LP+
Sbjct: 503 YVEGLPE 509
Score = 31.6 bits (70), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 238 REFNSEKWNHRIADLRKQTEELSERKYG 265
REF+ E WN +I DL+++ E L K G
Sbjct: 719 REFSFEAWNAKITDLKQKVENLFNEKCG 746
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 332 AVKAKGPVMIPYPFFQSHVEDFYAEALPK 360
A+ K V +P+ F+S EDFY E LP+
Sbjct: 748 ALGLKQAVKVPFALFESFPEDFYVEGLPE 776
Score = 30.0 bits (66), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 330 ARAVKAKGPVMIPYPFFQSHVEDFYAEALPK 360
A+A+ V +PYP F+S+ E Y E LP+
Sbjct: 584 AQALGLTEAVKVPYPVFESNPEFLYVEGLPE 614
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 243 EKWNHRIADLRKQTEELSERKY----GMSKLEKSCNLMFMGVYTVELLFIMGVP 292
E WN RI LRKQ EE+ K+ G+++ K +F E L++ G+P
Sbjct: 562 EDWNVRITKLRKQVEEIFNLKFAQALGLTEAVKVPYPVFES--NPEFLYVEGLP 613
>gi|169881252 general transcription factor II, i isoform 4 [Homo
sapiens]
Length = 957
Score = 113 bits (283), Expect = 2e-25
Identities = 76/187 (40%), Positives = 94/187 (50%), Gaps = 40/187 (21%)
Query: 214 RKTKTNEPPQPPVPEPANAGERKMREFNSEKWNHRIADLRKQTEELSERKYGMSKLEKSC 273
++ K NE PQPPVPEPANAG+RK+REFN EKWN RI DLRKQ EEL ERKY + K
Sbjct: 282 KRPKANELPQPPVPEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGP 341
Query: 274 NLMFMGVYT--VELLFIMGVPWTSP-------GLPASHAILTC-------FSLHELMNST 317
+ ++ VE L++ G+P P G+P IL HEL+NST
Sbjct: 342 VTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKKHELLNST 401
Query: 318 GEDLQLDKSTLS------ARAVKAKGPV------------------MIPYPFFQSHVEDF 353
EDLQLDK AR K + V +PY F++H D
Sbjct: 402 REDLQLDKPASGVKEEWYARITKLRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDL 461
Query: 354 YAEALPK 360
Y E LP+
Sbjct: 462 YVEGLPE 468
Score = 31.6 bits (70), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 238 REFNSEKWNHRIADLRKQTEELSERKYG 265
REF+ E WN +I DL+++ E L K G
Sbjct: 678 REFSFEAWNAKITDLKQKVENLFNEKCG 705
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 332 AVKAKGPVMIPYPFFQSHVEDFYAEALPK 360
A+ K V +P+ F+S EDFY E LP+
Sbjct: 707 ALGLKQAVKVPFALFESFPEDFYVEGLPE 735
Score = 30.0 bits (66), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 330 ARAVKAKGPVMIPYPFFQSHVEDFYAEALPK 360
A+A+ V +PYP F+S+ E Y E LP+
Sbjct: 543 AQALGLTEAVKVPYPVFESNPEFLYVEGLPE 573
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 243 EKWNHRIADLRKQTEELSERKY----GMSKLEKSCNLMFMGVYTVELLFIMGVP 292
E WN RI LRKQ EE+ K+ G+++ K +F E L++ G+P
Sbjct: 521 EDWNVRITKLRKQVEEIFNLKFAQALGLTEAVKVPYPVFES--NPEFLYVEGLP 572
>gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]
Length = 322
Score = 36.6 bits (83), Expect = 0.036
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 144 SRLHPARP---PVGSVRSCALLEEPA--APTASSDWLCVTVGLRRRAQRQQAKALVSSRL 198
S + PAR P G+ R A L P P S W T L A A VS+R+
Sbjct: 100 SPISPARACGGPAGAARGAASLALPTRGVPLPLSRWR--TGSLTYVAGDLGASGAVSARV 157
Query: 199 LEAFSLSLKVSLDEHRKTKTNEPPQPPVPEPANAGERKMR 238
SL+L + + HR T PP PP + + + R
Sbjct: 158 RARASLALGLPIQCHRHISTEPPPPPPAAPATGSAQSRPR 197
>gi|18765741 snail 1 homolog [Homo sapiens]
Length = 264
Score = 35.0 bits (79), Expect = 0.10
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 185 AQRQQAKALVSSRLLEAFSLSLKVSLDEHRKTKTNEPPQPPVPEPANAGERKMREFNSEK 244
A + Q A S RL E+ ++ SL + K ++PP PP P P++ + +E
Sbjct: 66 APQAQPIAWASLRLQESPRVAELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSVSSLEAEA 125
Query: 245 WN--HRIADLRKQTEELSERK 263
+ + + KQ +LSE K
Sbjct: 126 YAAFPGLGQVPKQLAQLSEAK 146
>gi|4758274 erythrocyte membrane protein band 4.1 (elliptocytosis 1,
RH-linked) isoform 3 [Homo sapiens]
Length = 588
Score = 35.0 bits (79), Expect = 0.10
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 217 KTNEPPQPPVPEPANAGERKMREFNSEK-----WNHRIADLRKQTEELSERKYGMSKLEK 271
K +EPP+ PEP A ++K + E N + DL K EE+ + +S+L+K
Sbjct: 389 KEDEPPEQAEPEPTEAWKKKRERLDGENIYIRHSNLMLEDLDKSQEEIKKHHASISELKK 448
Query: 272 S 272
+
Sbjct: 449 N 449
>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
sapiens]
Length = 865
Score = 33.5 bits (75), Expect = 0.30
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 203 SLSLKVSLDEHRK-TKTNEPPQPPVPEPANAGERKMREFNSEKWNHRIADLRKQTEE 258
S SL++S DEH+K + TN V + E+K R ++E+ + ADL ++TEE
Sbjct: 559 SKSLEMSHDEHKKHSHTNLSISTGVTKLKKTEEKKHRTLHTEELTSKEADLTEETEE 615
>gi|71164892 gremlin 2 precursor [Homo sapiens]
Length = 168
Score = 33.5 bits (75), Expect = 0.30
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 199 LEAFSLSLKVSLDEHRKTKTNEPPQPPVPEPANAGERKMREFNSEKWNHRIADLRKQTEE 258
L F +++ V + E RK + P +P P G NSE+W H+I ++ ++E
Sbjct: 7 LSLFLVAVLVKVAEARKNR----PAGAIPSPYKDGSSN----NSERWQHQIKEVLASSQE 58
Query: 259 ---LSERKY 264
++ERKY
Sbjct: 59 ALVVTERKY 67
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapiens]
Length = 1341
Score = 33.1 bits (74), Expect = 0.40
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 210 LDEHRKTKTNE---------PPQPPV--PEPANAGERKMREFNSEKWNHRIADLRKQTEE 258
+D +TKT E PP PPV P+ A +R+ E+W R ++ ++
Sbjct: 1100 VDRPSETKTEEQGIPRPLHPPPPPPVQPPQHPRAEQREQERAVREQWAEREREMERRERT 1159
Query: 259 LSERKYGMSKLEK 271
SER++ K+ +
Sbjct: 1160 RSEREWDRDKVRE 1172
>gi|14917115 keratin 31 [Homo sapiens]
Length = 416
Score = 32.7 bits (73), Expect = 0.52
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 6 PSQVCASLLIAAFQAGPCLAYLCSCSVGIPPSLSCS---RSGPCTPF 49
PS CA+ + GPCL+ C+ V P C+ R GPC F
Sbjct: 368 PSNPCATTNACSKPIGPCLSNPCTSCVPPAPCTPCAPRPRCGPCNSF 414
>gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens]
Length = 610
Score = 32.7 bits (73), Expect = 0.52
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 219 NEPPQPPVPEPANAGERKMREFNSEKWNHRIADLRKQTEELSERKYG-MSKLEKSCNLMF 277
+ PP PP P+P + KM+E N E W I +QT + +Y S E +
Sbjct: 191 SRPPTPPEPDPGSRRSTKMQE-NPEAWAQGIVREIRQTRDSQPLEYSRTSPTEWKSSSQR 249
Query: 278 MGVY 281
G+Y
Sbjct: 250 RGIY 253
>gi|50593108 5' nucleotidase, cytosolic IB isoform 2 [Homo sapiens]
Length = 550
Score = 32.7 bits (73), Expect = 0.52
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 219 NEPPQPPVPEPANAGERKMREFNSEKWNHRIADLRKQTEELSERKYG-MSKLEKSCNLMF 277
+ PP PP P+P + KM+E N E W I +QT + +Y S E +
Sbjct: 131 SRPPTPPEPDPGSRRSTKMQE-NPEAWAQGIVREIRQTRDSQPLEYSRTSPTEWKSSSQR 189
Query: 278 MGVY 281
G+Y
Sbjct: 190 RGIY 193
>gi|4505913 PMS2 postmeiotic segregation increased 2 isoform a [Homo
sapiens]
Length = 862
Score = 32.3 bits (72), Expect = 0.68
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 188 QQAKALVSSRLLEAFSLSLKVSLDEHRKTKTNEPPQPPVPEPANAGERKMREFNSEKWNH 247
++ K + SRL EAFSL R T N+P P PEP + + R S +
Sbjct: 410 EEKKDVSISRLREAFSL---------RHTTENKPHSPKTPEPRRSPLGQKRGMLSSSTSG 460
Query: 248 RIAD---LRKQTEELS 260
I+D LR Q E +S
Sbjct: 461 AISDKGVLRPQKEAVS 476
>gi|7661878 kinesin family member 14 [Homo sapiens]
Length = 1648
Score = 31.2 bits (69), Expect = 1.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 235 RKMREFNSEKWNHRIADLRKQTEELSERKY 264
+KM+E N++K NH+I +L K + L + Y
Sbjct: 994 KKMQEINNQKANHKIEELEKAKQHLEQEIY 1023
>gi|117553584 adaptor-related protein complex 3, delta 1 subunit
isoform 1 [Homo sapiens]
Length = 1112
Score = 30.8 bits (68), Expect = 2.0
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 205 SLKVSLDEHRKTKTNEPPQPPVPEPANAGERKMREFNSEKWNHRIADLRKQTEELSE 261
S K+ + +HR T+T++ P+ VP ++ ++ K R + +K+ E+ +E
Sbjct: 722 SEKLPIQKHRNTETSKSPEKDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKAE 778
>gi|5730009 ret finger protein [Homo sapiens]
Length = 513
Score = 30.8 bits (68), Expect = 2.0
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
Query: 130 RPGRSLATQNCQLSSRLHPARP--PVGSVRSCALLEEPAAPTASSDWLCVTVGLRRRAQR 187
RP R LA QL +L RP P G + C EP D + + V R +
Sbjct: 66 RPNRHLANVT-QLVKQLRTERPSGPGGEMGVCEKHREPLKLYCEEDQMPICVVCDRSREH 124
Query: 188 QQAKALVSSRLLEAFSLSLKVSLDEHRKTKTNEPPQPPVPEPANAGERKMREFNSEK 244
+ L +E F ++ LD ++ K + + E A A + + EK
Sbjct: 125 RGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLSLTQMEREK 181
>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
isoform 2 [Homo sapiens]
Length = 1153
Score = 30.0 bits (66), Expect = 3.4
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 205 SLKVSLDEHRKTKTNEPPQPPVPEPANAGERKMREFNSEKWNHRIADLRKQTEELSERKY 264
S K+ + +HR T+T++ P+ VP ++ ++ K R + +K+ E+ K
Sbjct: 813 SEKLPIQKHRNTETSKSPEKDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKKSPKP 872
Query: 265 GMSKLEK 271
K K
Sbjct: 873 KKKKHRK 879
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 30.0 bits (66), Expect = 3.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 196 SRLLEAFSLSLKVSLDEHRKTKTNEPPQ-PPVPEPANAGERKMREF 240
S++ + S ++S++E TK + PP PP P+PA E F
Sbjct: 2403 SKIPSTENSSQEISVEERTPTKASVPPDLPPPPQPAPVDEEPQARF 2448
>gi|20357552 cortactin isoform a [Homo sapiens]
Length = 550
Score = 30.0 bits (66), Expect = 3.4
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 182 RRRAQRQQAKALVSSRLLEAFSLSLKVSLDEHRKTKTNEPPQPPVPEP 229
RR+A+ ++A+ + R + + L+E + KT PP P P+P
Sbjct: 366 RRKAEAERAQRMAKERQEQE---EARRKLEEQARAKTQTPPVSPAPQP 410
>gi|20357556 cortactin isoform b [Homo sapiens]
Length = 513
Score = 30.0 bits (66), Expect = 3.4
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 182 RRRAQRQQAKALVSSRLLEAFSLSLKVSLDEHRKTKTNEPPQPPVPEP 229
RR+A+ ++A+ + R + + L+E + KT PP P P+P
Sbjct: 329 RRKAEAERAQRMAKERQEQE---EARRKLEEQARAKTQTPPVSPAPQP 373
>gi|16933557 dachsous 1 precursor [Homo sapiens]
Length = 3298
Score = 29.6 bits (65), Expect = 4.4
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 95 PVGAQRLLAQSLALAAPGAEDREVV-KLLLVAYVRRRPGRSLATQNCQLSSRL 146
PV A RL A++ AL+AP DRE LLL+ RP + + ++S+R+
Sbjct: 1482 PVPALRLDARTGALSAPRGLDRETTPALLLLVEATDRPANASRRRAARVSARV 1534
>gi|134276943 separase [Homo sapiens]
Length = 2120
Score = 29.3 bits (64), Expect = 5.7
Identities = 38/156 (24%), Positives = 55/156 (35%), Gaps = 9/156 (5%)
Query: 46 CTPFFTSSAKLPLKSSDEASGRPGLQLALAIEELLRDSAIGCTFCDRCRPVGAQRLLAQS 105
C F +L L +D + LQ L + E + D + V Q+ Q+
Sbjct: 1027 CALFLVLKGELELARNDIDLCQSDLQQVLFLLESCTEFGGVTQHLDSVKKVHLQKGKQQA 1086
Query: 106 LALAAPGAEDREVV----KLLLVAYVRRRPGRSLATQNCQLSSRLHPARPPVGSVRS--- 158
P + E+ L LVA V + PG + N + P P S
Sbjct: 1087 QVPCPPQLPEEELFLRGPALELVATVAKEPGPIAPSTNSSPVLKTKPQPIPNFLSHSPTC 1146
Query: 159 -CALLEEPAAPTASSDWLCVTVGLRRRAQRQQAKAL 193
C+L P W+ VT G+ R A QA+ L
Sbjct: 1147 DCSLCASPVLTAVCLRWVLVTAGV-RLAMGHQAQGL 1181
>gi|50980301 myosin phosphatase-Rho interacting protein isoform 2
[Homo sapiens]
Length = 1025
Score = 29.3 bits (64), Expect = 5.7
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 148 PARPPVGSVR--SCALLEEPAAPTASSDWLCVTVGLRRRAQRQQAKALVSSRLLEAFSLS 205
P P G++ C + + T LC+ + R + K +VS LE +
Sbjct: 90 PTTLPQGTINMNQCTDVVDGEGRTGQKFSLCILTPEKEHFIRAETKEIVSG-WLEMLMVY 148
Query: 206 LKVSLDEHRKTKTNEPPQPPVPEPA 230
+ + +K + EPP P P PA
Sbjct: 149 PRTNKQNQKKKRKVEPPTPQEPGPA 173
>gi|50980307 myosin phosphatase-Rho interacting protein isoform 1
[Homo sapiens]
Length = 1038
Score = 29.3 bits (64), Expect = 5.7
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 148 PARPPVGSVR--SCALLEEPAAPTASSDWLCVTVGLRRRAQRQQAKALVSSRLLEAFSLS 205
P P G++ C + + T LC+ + R + K +VS LE +
Sbjct: 90 PTTLPQGTINMNQCTDVVDGEGRTGQKFSLCILTPEKEHFIRAETKEIVSG-WLEMLMVY 148
Query: 206 LKVSLDEHRKTKTNEPPQPPVPEPA 230
+ + +K + EPP P P PA
Sbjct: 149 PRTNKQNQKKKRKVEPPTPQEPGPA 173
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 28.9 bits (63), Expect = 7.5
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 24/146 (16%)
Query: 217 KTNEPPQPPVPEP-----------ANAGERKMREFNSEKWNHRIADLRKQTEELSERKYG 265
K EPPQ P EP A + +K H + ++K T+ +ER
Sbjct: 745 KVAEPPQRPASEPHVVPKAVKPRVIQAPSETHIKTTDQKGMHISSQIKKTTDLTTERLVH 804
Query: 266 MSKLEKSCNLMFMGVYTVELLFIMGVPWTSPGLPASHAILTCFSLHELMNSTGEDLQLDK 325
+ K ++ + F TV + VP T G AS A +L + +++T ++ K
Sbjct: 805 VDKRPRTASPHF----TVSKI---SVPKTEHGYEASIAGSAIATLQKELSATSSAQKITK 857
Query: 326 STL------SARAVKAKGPVMIPYPF 345
S S V+A+ + +PF
Sbjct: 858 SVKAPTVKPSETRVRAEPTPLPQFPF 883
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 28.9 bits (63), Expect = 7.5
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 24/146 (16%)
Query: 217 KTNEPPQPPVPEP-----------ANAGERKMREFNSEKWNHRIADLRKQTEELSERKYG 265
K EPPQ P EP A + +K H + ++K T+ +ER
Sbjct: 745 KVAEPPQRPASEPHVVPKAVKPRVIQAPSETHIKTTDQKGMHISSQIKKTTDLTTERLVH 804
Query: 266 MSKLEKSCNLMFMGVYTVELLFIMGVPWTSPGLPASHAILTCFSLHELMNSTGEDLQLDK 325
+ K ++ + F TV + VP T G AS A +L + +++T ++ K
Sbjct: 805 VDKRPRTASPHF----TVSKI---SVPKTEHGYEASIAGSAIATLQKELSATSSAQKITK 857
Query: 326 STL------SARAVKAKGPVMIPYPF 345
S S V+A+ + +PF
Sbjct: 858 SVKAPTVKPSETRVRAEPTPLPQFPF 883
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 28.9 bits (63), Expect = 7.5
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 24/146 (16%)
Query: 217 KTNEPPQPPVPEP-----------ANAGERKMREFNSEKWNHRIADLRKQTEELSERKYG 265
K EPPQ P EP A + +K H + ++K T+ +ER
Sbjct: 699 KVAEPPQRPASEPHVVPKAVKPRVIQAPSETHIKTTDQKGMHISSQIKKTTDLTTERLVH 758
Query: 266 MSKLEKSCNLMFMGVYTVELLFIMGVPWTSPGLPASHAILTCFSLHELMNSTGEDLQLDK 325
+ K ++ + F TV + VP T G AS A +L + +++T ++ K
Sbjct: 759 VDKRPRTASPHF----TVSKI---SVPKTEHGYEASIAGSAIATLQKELSATSSAQKITK 811
Query: 326 STL------SARAVKAKGPVMIPYPF 345
S S V+A+ + +PF
Sbjct: 812 SVKAPTVKPSETRVRAEPTPLPQFPF 837
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 28.9 bits (63), Expect = 7.5
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 24/146 (16%)
Query: 217 KTNEPPQPPVPEP-----------ANAGERKMREFNSEKWNHRIADLRKQTEELSERKYG 265
K EPPQ P EP A + +K H + ++K T+ +ER
Sbjct: 699 KVAEPPQRPASEPHVVPKAVKPRVIQAPSETHIKTTDQKGMHISSQIKKTTDLTTERLVH 758
Query: 266 MSKLEKSCNLMFMGVYTVELLFIMGVPWTSPGLPASHAILTCFSLHELMNSTGEDLQLDK 325
+ K ++ + F TV + VP T G AS A +L + +++T ++ K
Sbjct: 759 VDKRPRTASPHF----TVSKI---SVPKTEHGYEASIAGSAIATLQKELSATSSAQKITK 811
Query: 326 STL------SARAVKAKGPVMIPYPF 345
S S V+A+ + +PF
Sbjct: 812 SVKAPTVKPSETRVRAEPTPLPQFPF 837
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,549,394
Number of Sequences: 37866
Number of extensions: 721985
Number of successful extensions: 3517
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3440
Number of HSP's gapped (non-prelim): 88
length of query: 361
length of database: 18,247,518
effective HSP length: 104
effective length of query: 257
effective length of database: 14,309,454
effective search space: 3677529678
effective search space used: 3677529678
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.