Guide to the Human Genome
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Name: LOC100294337 Sequence: fasta or formatted (430aa) NCBI GI: 239740942
Description:

PREDICTED: hypothetical protein XP_002344106 isoform 3

Not currently referenced in the text

Other entries for this name:
alt mRNA {430aa} PREDICTED: hypothetical protein XP_002344105 isoform 2
alt mRNA {430aa} PREDICTED: hypothetical protein XP_002344104 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         39           3
 C cysteine            0.7          3           1
 D aspartate           4.4         19           1
 E glutamate           7.2         31           4
 F phenylalanine       2.1          9           1
 G glycine             6.5         28           2
 H histidine           2.6         11           2
 I isoleucine          2.6         11           1
 K lysine              5.6         24           2
 L leucine            13.0         56           2
 M methionine          1.6          7           1
 N asparagine          4.9         21           2
 P proline             4.7         20           2
 Q glutamine           4.4         19           1
 R arginine            5.8         25           2
 S serine             13.7         59           3
 T threonine           7.0         30           3
 V valine              3.5         15           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344106 isofor... 
LOC100294337          1.000   PREDICTED: hypothetical protein XP_002344104 isofor...
LOC100294337          1.000   PREDICTED: hypothetical protein XP_002344105 isofor...
KIAA1267              0.994   hypothetical protein LOC284058 
C2orf67               0.027   hypothetical protein LOC151050 
TNRC18                0.021   trinucleotide repeat containing 18 
AKAP6                 0.015   A-kinase anchor protein 6 
CHGA                  0.015   chromogranin A precursor 
CDKN2AIP              0.011   CDKN2A interacting protein 
CXorf15               0.011   gamma-taxilin 
ARHGAP21              0.010   Rho GTPase activating protein 21 
CCDC6                 0.010   coiled-coil domain containing 6 
CEP110                0.010   centrosomal protein 110kDa 
MUC12                 0.010   PREDICTED: mucin 12 
MUC12                 0.010   PREDICTED: mucin 12, cell surface associated 
FOXP2                 0.010   forkhead box P2 isoform I 
CDC42BPB              0.010   CDC42-binding protein kinase beta 
GIT2                  0.009   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.009   G protein-coupled receptor kinase interacting ArfGAP...
MDM2                  0.009   mouse double minute 2 homolog isoform MDM2g 
BRPF1                 0.009   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.009   bromodomain and PHD finger-containing protein 1 isof...
MDM2                  0.009   mouse double minute 2 homolog isoform MDM2f 
MDM2                  0.009   mouse double minute 2 homolog isoform MDM2 
EXPH5                 0.009   exophilin 5 isoform c 
EXPH5                 0.009   exophilin 5 isoform b 
RALBP1                0.009   ralA binding protein 1 
EXPH5                 0.009   exophilin 5 isoform a 
ERICH1                0.009   glutamate-rich 1 
MEI1                  0.009   meiosis defective 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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