Guide to the Human Genome
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Search of human proteins with 239740900

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740900 PREDICTED: hypothetical protein XP_002344096 [Homo
sapiens]
         (125 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754271 PREDICTED: hypothetical protein [Homo sapiens]           269   4e-73
gi|239748805 PREDICTED: hypothetical protein XP_002346828 [Homo ...   269   4e-73
gi|239742844 PREDICTED: hypothetical protein XP_002342661 [Homo ...   269   4e-73
gi|239740900 PREDICTED: hypothetical protein XP_002344096 [Homo ...   269   4e-73
gi|239740780 PREDICTED: hypothetical protein [Homo sapiens]           268   8e-73
gi|239740677 PREDICTED: hypothetical protein [Homo sapiens]           268   8e-73
gi|239513944 PREDICTED: hypothetical protein [Homo sapiens]           268   8e-73
gi|239740830 PREDICTED: hypothetical protein XP_002344068 [Homo ...   249   3e-67
gi|10092647 cardiolipin synthase 1 isoform 1 [Homo sapiens]            32   0.12 
gi|57222570 codanin 1 [Homo sapiens]                                   32   0.16 
gi|15431318 keratin 38 [Homo sapiens]                                  29   0.81 
gi|194272180 plexin B1 [Homo sapiens]                                  29   0.81 
gi|40254442 plexin B1 [Homo sapiens]                                   29   0.81 
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]       29   0.81 
gi|38683827 ADAM metallopeptidase with thrombospondin type 1 mot...    29   0.81 
gi|239047795 pleckstrin homology domain containing, family A mem...    29   1.1  
gi|4503493 early growth response 1 [Homo sapiens]                      29   1.1  
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]            29   1.1  
gi|209977080 REST corepressor 3 isoform a [Homo sapiens]               29   1.1  
gi|8922733 REST corepressor 3 isoform d [Homo sapiens]                 29   1.1  
gi|58331144 proline rich region 18 [Homo sapiens]                      29   1.1  
gi|8922273 mediator complex subunit 9 [Homo sapiens]                   29   1.1  
gi|33286436 gametogenetin [Homo sapiens]                               29   1.1  
gi|45243501 BCL2-like 13 (apoptosis facilitator) [Homo sapiens]        28   1.4  
gi|33946327 nucleoporin 214kDa [Homo sapiens]                          28   1.8  
gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo ...    28   1.8  
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    28   1.8  
gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo ...    28   1.8  
gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo ...    28   1.8  
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso...    28   1.8  

>gi|239754271 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 125

 Score =  269 bits (688), Expect = 4e-73
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
           MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60

Query: 61  PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
           PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61  PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120

Query: 121 TRKGR 125
           TRKGR
Sbjct: 121 TRKGR 125


>gi|239748805 PREDICTED: hypothetical protein XP_002346828 [Homo
           sapiens]
          Length = 125

 Score =  269 bits (688), Expect = 4e-73
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
           MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60

Query: 61  PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
           PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61  PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120

Query: 121 TRKGR 125
           TRKGR
Sbjct: 121 TRKGR 125


>gi|239742844 PREDICTED: hypothetical protein XP_002342661 [Homo
           sapiens]
          Length = 125

 Score =  269 bits (688), Expect = 4e-73
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
           MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60

Query: 61  PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
           PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61  PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120

Query: 121 TRKGR 125
           TRKGR
Sbjct: 121 TRKGR 125


>gi|239740900 PREDICTED: hypothetical protein XP_002344096 [Homo
           sapiens]
          Length = 125

 Score =  269 bits (688), Expect = 4e-73
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
           MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60

Query: 61  PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
           PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61  PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120

Query: 121 TRKGR 125
           TRKGR
Sbjct: 121 TRKGR 125


>gi|239740780 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 125

 Score =  268 bits (685), Expect = 8e-73
 Identities = 124/125 (99%), Positives = 125/125 (100%)

Query: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
           MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60

Query: 61  PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
           PPCWTGC+LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61  PPCWTGCVLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120

Query: 121 TRKGR 125
           TRKGR
Sbjct: 121 TRKGR 125


>gi|239740677 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 125

 Score =  268 bits (685), Expect = 8e-73
 Identities = 124/125 (99%), Positives = 125/125 (100%)

Query: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
           MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60

Query: 61  PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
           PPCWTGC+LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61  PPCWTGCVLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120

Query: 121 TRKGR 125
           TRKGR
Sbjct: 121 TRKGR 125


>gi|239513944 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 125

 Score =  268 bits (685), Expect = 8e-73
 Identities = 124/125 (99%), Positives = 125/125 (100%)

Query: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
           MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1   MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60

Query: 61  PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
           PPCWTGC+LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61  PPCWTGCVLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120

Query: 121 TRKGR 125
           TRKGR
Sbjct: 121 TRKGR 125


>gi|239740830 PREDICTED: hypothetical protein XP_002344068 [Homo
           sapiens]
          Length = 142

 Score =  249 bits (637), Expect = 3e-67
 Identities = 115/117 (98%), Positives = 116/117 (99%)

Query: 9   VCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCL 68
           V LFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGC+
Sbjct: 26  VGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 85

Query: 69  LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 125
           LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR
Sbjct: 86  LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 142


>gi|10092647 cardiolipin synthase 1 isoform 1 [Homo sapiens]
          Length = 301

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 55 WPLSLPPPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSG 97
          W L  P PC  GCL  A R + +P  LGL +   +G + H SG
Sbjct: 32 WALLPPVPCCLGCL--AERWRLRPAALGLRL-PGIGQRNHCSG 71


>gi|57222570 codanin 1 [Homo sapiens]
          Length = 1227

 Score = 31.6 bits (70), Expect = 0.16
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 14  QLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLG-NPWPLSLPPPC 63
           ++NP   S E  L  P  ++  T PP  C  +   S L  +PW L LPP C
Sbjct: 196 RINPTPVSEERSLSKP--KTCFTSPPISCVPSSQPSALDTSPWGLGLPPGC 244


>gi|15431318 keratin 38 [Homo sapiens]
          Length = 456

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 49 SPLGNPWPLSLPPPCWTGCLLPAPRGQRKPGPLGL 83
          +PLG P  L LPP C T C  P P     PG +G+
Sbjct: 60 TPLGRP-SLCLPPTCHTAC--PLPGTCHIPGNIGI 91


>gi|194272180 plexin B1 [Homo sapiens]
          Length = 2135

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 18/49 (36%), Positives = 20/49 (40%)

Query: 14  QLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPP 62
           QL+P      T    P L+SRD LPP          P  NP  L L  P
Sbjct: 57  QLSPGLQLEATVSTGPVLDSRDCLPPVMPDECPQAQPTNNPNQLLLVSP 105


>gi|40254442 plexin B1 [Homo sapiens]
          Length = 2135

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 18/49 (36%), Positives = 20/49 (40%)

Query: 14  QLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPP 62
           QL+P      T    P L+SRD LPP          P  NP  L L  P
Sbjct: 57  QLSPGLQLEATVSTGPVLDSRDCLPPVMPDECPQAQPTNNPNQLLLVSP 105


>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
          Length = 712

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 46  GTESPLGNPWPLSLPP--PCWTGCLLPAP 72
           G   P G   PL  PP  P W GC  P P
Sbjct: 604 GARMPFGGQVPLGAPPPFPTWPGCPQPPP 632



 Score = 26.2 bits (56), Expect = 6.8
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 38  PPTHCFMAGT---ESPLGNPWPLSLPPPCWTGCLLPAPRGQRKPGPLGLSI----FISLG 90
           PP H + AGT    SP    +P SLP P        +P   + PG   L I     + LG
Sbjct: 631 PPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLG 690

Query: 91  NKRH 94
              H
Sbjct: 691 LNNH 694


>gi|38683827 ADAM metallopeptidase with thrombospondin type 1 motif, 7
            preproprotein [Homo sapiens]
          Length = 1686

 Score = 29.3 bits (64), Expect = 0.81
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 43   FMAGTESPLGNPWPLSLPPPCWT-----GCLLPAPRGQRKPGPLGLSIFISLGNKRHRSG 97
            F+   ++P+G P  L LP   W      G   PA    +   P+G      L        
Sbjct: 1156 FLPEEDTPIGAP-DLGLPSLSWPRVSTDGLQTPATPESQNDFPVGKDSQSQLPPPWRDRT 1214

Query: 98   NHVVRESEQPLSQGNPH 114
            N V ++ E+P  +G PH
Sbjct: 1215 NEVFKDDEEPKGRGAPH 1231


>gi|239047795 pleckstrin homology domain containing, family A member
           7 [Homo sapiens]
          Length = 1121

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 54  PWPLSLPPPCWTGCL------LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQP 107
           P P  +PPP             PA R   KP     S+ ISLG+   R+  H V+ S   
Sbjct: 568 PSPSDIPPPGPPRVFPPRRPHTPAERVTVKPPDQRRSVDISLGDSPRRARGHAVKNSSHV 627

Query: 108 LSQGNPHQGW 117
             +  P  G+
Sbjct: 628 DRRSMPSMGY 637


>gi|4503493 early growth response 1 [Homo sapiens]
          Length = 543

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 4   VFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTE-SPLGNPWPLSLPPP 62
           +F L+  L    NP ASS+       +  S    PP  C +   + SP+ +  P + P P
Sbjct: 154 LFSLVSGLVSMTNPPASSSSAPSPAASSASASQSPPLSCAVPSNDSSPIYSAAP-TFPTP 212

Query: 63  CWTGCLLPAPRGQRKPGPLGLSI 85
                + P P+ Q  PG  G ++
Sbjct: 213 --NTDIFPEPQSQAFPGSAGTAL 233


>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 274

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 15  LNPNASSTETQLLVPALESRDTLPPT---HCFMAGTESPLGNPW----PLSLPPPCWTGC 67
           L P  S+ + Q   P+L +R T PP     C       PLG+      P   PPP     
Sbjct: 69  LLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPC-PPLGHGLRPRPPPGTPPPRCPRT 127

Query: 68  LLPAPRG 74
           L P PRG
Sbjct: 128 LAPGPRG 134


>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
          Length = 553

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 19/65 (29%), Positives = 29/65 (44%)

Query: 17  PNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLLPAPRGQR 76
           P+  ST+ +      ++  TL P+    + T +P      L+ PPP     L  AP   R
Sbjct: 429 PSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHR 488

Query: 77  KPGPL 81
           +P PL
Sbjct: 489 QPPPL 493


>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
          Length = 495

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 19/65 (29%), Positives = 29/65 (44%)

Query: 17  PNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLLPAPRGQR 76
           P+  ST+ +      ++  TL P+    + T +P      L+ PPP     L  AP   R
Sbjct: 371 PSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHR 430

Query: 77  KPGPL 81
           +P PL
Sbjct: 431 QPPPL 435


>gi|58331144 proline rich region 18 [Homo sapiens]
          Length = 295

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 17  PNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLL-----PA 71
           P+ S+   +LL P L +R   P      +  ++P         PPP   G  L       
Sbjct: 165 PSPSAEPRRLLAPCLPARAAGPRRGGPASDPDAPPTAGQGRRAPPP---GAQLLHGGLQV 221

Query: 72  PRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQG 111
           P+   +PG L   + +SL N+RHR  +    E  + + +G
Sbjct: 222 PQLSPRPGALRPMLKVSLLNERHRYDDVEYEEEPEAVDEG 261


>gi|8922273 mediator complex subunit 9 [Homo sapiens]
          Length = 146

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 14/51 (27%)

Query: 32 ESRDTLPPTHCFMAGTESPLGN--PWPLSLPPPCWTGCLLPAPRGQRKPGP 80
          ++ D LPPT      ++ PL +  P P   PPP      +PAP+ Q+ P P
Sbjct: 11 QAEDVLPPT------SDQPLPDTKPLPPPQPPP------VPAPQPQQSPAP 49


>gi|33286436 gametogenetin [Homo sapiens]
          Length = 652

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 20  SSTETQLLVPA--LESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLLPAPRGQRK 77
           S+T   L+VP     S  TLP T    +    P      +S PPP   G LLP P   +K
Sbjct: 54  SATPPGLMVPREPQASPSTLPLTLERPSPVMPPPEEAAAVSAPPPAPAGTLLPGPSKWQK 113

Query: 78  P 78
           P
Sbjct: 114 P 114


>gi|45243501 BCL2-like 13 (apoptosis facilitator) [Homo sapiens]
          Length = 485

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 22  TETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLS--LPPPCWTGCLLPAPRGQRKPG 79
           TE + +VPALE  +TL       A  ES +    P S   P P   G    +P G+ KP 
Sbjct: 393 TEVEEVVPALEPTETLLSEKEINAREESLVEELSPASEKKPVPPSEGKSRLSPAGEMKPM 452

Query: 80  PL--GLSIFI 87
           PL  G SI +
Sbjct: 453 PLSEGKSILL 462


>gi|33946327 nucleoporin 214kDa [Homo sapiens]
          Length = 2090

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 31  LESRDTLPPTHCFMAGTE----SPLGNPWPLSLPPPC--WTGCLLPAPRGQRKPG 79
           + S  + PP   F + ++     PL +P PLS PP        +LP+P G+   G
Sbjct: 600 VSSSQSAPPMSPFSSASKPAASGPLSHPTPLSAPPSSVPLKSSVLPSPSGRSAQG 654


>gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo
          sapiens]
          Length = 218

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 53 NPWPLSLPPPCWTGCLLPAPRGQRKPGPLGLS 84
          NP    LPPP      LP PR  + P PLGL+
Sbjct: 46 NPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLA 77


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 1124

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 13  LQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLLPAP 72
           L L P + S    L    L S    PP+    + T  P+  P  L   PP      L +P
Sbjct: 341 LPLAPPSPSAPPSL--QTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSP 398

Query: 73  RGQRKPGPLGLS 84
             Q  P PL LS
Sbjct: 399 SLQAPPSPLALS 410


>gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo
          sapiens]
          Length = 218

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 53 NPWPLSLPPPCWTGCLLPAPRGQRKPGPLGLS 84
          NP    LPPP      LP PR  + P PLGL+
Sbjct: 46 NPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLA 77


>gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo
          sapiens]
          Length = 218

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 53 NPWPLSLPPPCWTGCLLPAPRGQRKPGPLGLS 84
          NP    LPPP      LP PR  + P PLGL+
Sbjct: 46 NPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLA 77


>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
           isoform B' [Homo sapiens]
          Length = 240

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 26  LLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLLPAPRGQRKPGP 80
           ++ P    R  + P      G  +P+G P P   PPP   G   P P G R P P
Sbjct: 188 MMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPP--PGMRGPPPPGMRPPRP 240


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,568,214
Number of Sequences: 37866
Number of extensions: 406020
Number of successful extensions: 1280
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 139
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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