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Search of human proteins with 239740900
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740900 PREDICTED: hypothetical protein XP_002344096 [Homo
sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754271 PREDICTED: hypothetical protein [Homo sapiens] 269 4e-73
gi|239748805 PREDICTED: hypothetical protein XP_002346828 [Homo ... 269 4e-73
gi|239742844 PREDICTED: hypothetical protein XP_002342661 [Homo ... 269 4e-73
gi|239740900 PREDICTED: hypothetical protein XP_002344096 [Homo ... 269 4e-73
gi|239740780 PREDICTED: hypothetical protein [Homo sapiens] 268 8e-73
gi|239740677 PREDICTED: hypothetical protein [Homo sapiens] 268 8e-73
gi|239513944 PREDICTED: hypothetical protein [Homo sapiens] 268 8e-73
gi|239740830 PREDICTED: hypothetical protein XP_002344068 [Homo ... 249 3e-67
gi|10092647 cardiolipin synthase 1 isoform 1 [Homo sapiens] 32 0.12
gi|57222570 codanin 1 [Homo sapiens] 32 0.16
gi|15431318 keratin 38 [Homo sapiens] 29 0.81
gi|194272180 plexin B1 [Homo sapiens] 29 0.81
gi|40254442 plexin B1 [Homo sapiens] 29 0.81
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens] 29 0.81
gi|38683827 ADAM metallopeptidase with thrombospondin type 1 mot... 29 0.81
gi|239047795 pleckstrin homology domain containing, family A mem... 29 1.1
gi|4503493 early growth response 1 [Homo sapiens] 29 1.1
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 29 1.1
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 29 1.1
gi|58331144 proline rich region 18 [Homo sapiens] 29 1.1
gi|8922273 mediator complex subunit 9 [Homo sapiens] 29 1.1
gi|33286436 gametogenetin [Homo sapiens] 29 1.1
gi|45243501 BCL2-like 13 (apoptosis facilitator) [Homo sapiens] 28 1.4
gi|33946327 nucleoporin 214kDa [Homo sapiens] 28 1.8
gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo ... 28 1.8
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 28 1.8
gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo ... 28 1.8
gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo ... 28 1.8
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 28 1.8
>gi|239754271 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 269 bits (688), Expect = 4e-73
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
Query: 61 PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61 PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
Query: 121 TRKGR 125
TRKGR
Sbjct: 121 TRKGR 125
>gi|239748805 PREDICTED: hypothetical protein XP_002346828 [Homo
sapiens]
Length = 125
Score = 269 bits (688), Expect = 4e-73
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
Query: 61 PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61 PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
Query: 121 TRKGR 125
TRKGR
Sbjct: 121 TRKGR 125
>gi|239742844 PREDICTED: hypothetical protein XP_002342661 [Homo
sapiens]
Length = 125
Score = 269 bits (688), Expect = 4e-73
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
Query: 61 PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61 PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
Query: 121 TRKGR 125
TRKGR
Sbjct: 121 TRKGR 125
>gi|239740900 PREDICTED: hypothetical protein XP_002344096 [Homo
sapiens]
Length = 125
Score = 269 bits (688), Expect = 4e-73
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
Query: 61 PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61 PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
Query: 121 TRKGR 125
TRKGR
Sbjct: 121 TRKGR 125
>gi|239740780 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 268 bits (685), Expect = 8e-73
Identities = 124/125 (99%), Positives = 125/125 (100%)
Query: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
Query: 61 PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
PPCWTGC+LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61 PPCWTGCVLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
Query: 121 TRKGR 125
TRKGR
Sbjct: 121 TRKGR 125
>gi|239740677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 268 bits (685), Expect = 8e-73
Identities = 124/125 (99%), Positives = 125/125 (100%)
Query: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
Query: 61 PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
PPCWTGC+LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61 PPCWTGCVLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
Query: 121 TRKGR 125
TRKGR
Sbjct: 121 TRKGR 125
>gi|239513944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 268 bits (685), Expect = 8e-73
Identities = 124/125 (99%), Positives = 125/125 (100%)
Query: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP
Sbjct: 1 MMAVFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLP 60
Query: 61 PPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
PPCWTGC+LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD
Sbjct: 61 PPCWTGCVLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPD 120
Query: 121 TRKGR 125
TRKGR
Sbjct: 121 TRKGR 125
>gi|239740830 PREDICTED: hypothetical protein XP_002344068 [Homo
sapiens]
Length = 142
Score = 249 bits (637), Expect = 3e-67
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 9 VCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCL 68
V LFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGC+
Sbjct: 26 VGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 85
Query: 69 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 125
LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR
Sbjct: 86 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 142
>gi|10092647 cardiolipin synthase 1 isoform 1 [Homo sapiens]
Length = 301
Score = 32.0 bits (71), Expect = 0.12
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 55 WPLSLPPPCWTGCLLPAPRGQRKPGPLGLSIFISLGNKRHRSG 97
W L P PC GCL A R + +P LGL + +G + H SG
Sbjct: 32 WALLPPVPCCLGCL--AERWRLRPAALGLRL-PGIGQRNHCSG 71
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 31.6 bits (70), Expect = 0.16
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 14 QLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLG-NPWPLSLPPPC 63
++NP S E L P ++ T PP C + S L +PW L LPP C
Sbjct: 196 RINPTPVSEERSLSKP--KTCFTSPPISCVPSSQPSALDTSPWGLGLPPGC 244
>gi|15431318 keratin 38 [Homo sapiens]
Length = 456
Score = 29.3 bits (64), Expect = 0.81
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 49 SPLGNPWPLSLPPPCWTGCLLPAPRGQRKPGPLGL 83
+PLG P L LPP C T C P P PG +G+
Sbjct: 60 TPLGRP-SLCLPPTCHTAC--PLPGTCHIPGNIGI 91
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 29.3 bits (64), Expect = 0.81
Identities = 18/49 (36%), Positives = 20/49 (40%)
Query: 14 QLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPP 62
QL+P T P L+SRD LPP P NP L L P
Sbjct: 57 QLSPGLQLEATVSTGPVLDSRDCLPPVMPDECPQAQPTNNPNQLLLVSP 105
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 29.3 bits (64), Expect = 0.81
Identities = 18/49 (36%), Positives = 20/49 (40%)
Query: 14 QLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPP 62
QL+P T P L+SRD LPP P NP L L P
Sbjct: 57 QLSPGLQLEATVSTGPVLDSRDCLPPVMPDECPQAQPTNNPNQLLLVSP 105
>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
Length = 712
Score = 29.3 bits (64), Expect = 0.81
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 46 GTESPLGNPWPLSLPP--PCWTGCLLPAP 72
G P G PL PP P W GC P P
Sbjct: 604 GARMPFGGQVPLGAPPPFPTWPGCPQPPP 632
Score = 26.2 bits (56), Expect = 6.8
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 38 PPTHCFMAGT---ESPLGNPWPLSLPPPCWTGCLLPAPRGQRKPGPLGLSI----FISLG 90
PP H + AGT SP +P SLP P +P + PG L I + LG
Sbjct: 631 PPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLG 690
Query: 91 NKRH 94
H
Sbjct: 691 LNNH 694
>gi|38683827 ADAM metallopeptidase with thrombospondin type 1 motif, 7
preproprotein [Homo sapiens]
Length = 1686
Score = 29.3 bits (64), Expect = 0.81
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 43 FMAGTESPLGNPWPLSLPPPCWT-----GCLLPAPRGQRKPGPLGLSIFISLGNKRHRSG 97
F+ ++P+G P L LP W G PA + P+G L
Sbjct: 1156 FLPEEDTPIGAP-DLGLPSLSWPRVSTDGLQTPATPESQNDFPVGKDSQSQLPPPWRDRT 1214
Query: 98 NHVVRESEQPLSQGNPH 114
N V ++ E+P +G PH
Sbjct: 1215 NEVFKDDEEPKGRGAPH 1231
>gi|239047795 pleckstrin homology domain containing, family A member
7 [Homo sapiens]
Length = 1121
Score = 28.9 bits (63), Expect = 1.1
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 54 PWPLSLPPPCWTGCL------LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQP 107
P P +PPP PA R KP S+ ISLG+ R+ H V+ S
Sbjct: 568 PSPSDIPPPGPPRVFPPRRPHTPAERVTVKPPDQRRSVDISLGDSPRRARGHAVKNSSHV 627
Query: 108 LSQGNPHQGW 117
+ P G+
Sbjct: 628 DRRSMPSMGY 637
>gi|4503493 early growth response 1 [Homo sapiens]
Length = 543
Score = 28.9 bits (63), Expect = 1.1
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 4 VFLLLVCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTE-SPLGNPWPLSLPPP 62
+F L+ L NP ASS+ + S PP C + + SP+ + P + P P
Sbjct: 154 LFSLVSGLVSMTNPPASSSSAPSPAASSASASQSPPLSCAVPSNDSSPIYSAAP-TFPTP 212
Query: 63 CWTGCLLPAPRGQRKPGPLGLSI 85
+ P P+ Q PG G ++
Sbjct: 213 --NTDIFPEPQSQAFPGSAGTAL 233
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 28.9 bits (63), Expect = 1.1
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 15 LNPNASSTETQLLVPALESRDTLPPT---HCFMAGTESPLGNPW----PLSLPPPCWTGC 67
L P S+ + Q P+L +R T PP C PLG+ P PPP
Sbjct: 69 LLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPC-PPLGHGLRPRPPPGTPPPRCPRT 127
Query: 68 LLPAPRG 74
L P PRG
Sbjct: 128 LAPGPRG 134
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 28.9 bits (63), Expect = 1.1
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 17 PNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLLPAPRGQR 76
P+ ST+ + ++ TL P+ + T +P L+ PPP L AP R
Sbjct: 429 PSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHR 488
Query: 77 KPGPL 81
+P PL
Sbjct: 489 QPPPL 493
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 28.9 bits (63), Expect = 1.1
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 17 PNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLLPAPRGQR 76
P+ ST+ + ++ TL P+ + T +P L+ PPP L AP R
Sbjct: 371 PSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHR 430
Query: 77 KPGPL 81
+P PL
Sbjct: 431 QPPPL 435
>gi|58331144 proline rich region 18 [Homo sapiens]
Length = 295
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 17 PNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLL-----PA 71
P+ S+ +LL P L +R P + ++P PPP G L
Sbjct: 165 PSPSAEPRRLLAPCLPARAAGPRRGGPASDPDAPPTAGQGRRAPPP---GAQLLHGGLQV 221
Query: 72 PRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQG 111
P+ +PG L + +SL N+RHR + E + + +G
Sbjct: 222 PQLSPRPGALRPMLKVSLLNERHRYDDVEYEEEPEAVDEG 261
>gi|8922273 mediator complex subunit 9 [Homo sapiens]
Length = 146
Score = 28.9 bits (63), Expect = 1.1
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 14/51 (27%)
Query: 32 ESRDTLPPTHCFMAGTESPLGN--PWPLSLPPPCWTGCLLPAPRGQRKPGP 80
++ D LPPT ++ PL + P P PPP +PAP+ Q+ P P
Sbjct: 11 QAEDVLPPT------SDQPLPDTKPLPPPQPPP------VPAPQPQQSPAP 49
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 28.9 bits (63), Expect = 1.1
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 20 SSTETQLLVPA--LESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLLPAPRGQRK 77
S+T L+VP S TLP T + P +S PPP G LLP P +K
Sbjct: 54 SATPPGLMVPREPQASPSTLPLTLERPSPVMPPPEEAAAVSAPPPAPAGTLLPGPSKWQK 113
Query: 78 P 78
P
Sbjct: 114 P 114
>gi|45243501 BCL2-like 13 (apoptosis facilitator) [Homo sapiens]
Length = 485
Score = 28.5 bits (62), Expect = 1.4
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 22 TETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLS--LPPPCWTGCLLPAPRGQRKPG 79
TE + +VPALE +TL A ES + P S P P G +P G+ KP
Sbjct: 393 TEVEEVVPALEPTETLLSEKEINAREESLVEELSPASEKKPVPPSEGKSRLSPAGEMKPM 452
Query: 80 PL--GLSIFI 87
PL G SI +
Sbjct: 453 PLSEGKSILL 462
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 28.1 bits (61), Expect = 1.8
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 31 LESRDTLPPTHCFMAGTE----SPLGNPWPLSLPPPC--WTGCLLPAPRGQRKPG 79
+ S + PP F + ++ PL +P PLS PP +LP+P G+ G
Sbjct: 600 VSSSQSAPPMSPFSSASKPAASGPLSHPTPLSAPPSSVPLKSSVLPSPSGRSAQG 654
>gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo
sapiens]
Length = 218
Score = 28.1 bits (61), Expect = 1.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 53 NPWPLSLPPPCWTGCLLPAPRGQRKPGPLGLS 84
NP LPPP LP PR + P PLGL+
Sbjct: 46 NPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLA 77
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 28.1 bits (61), Expect = 1.8
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 13 LQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLLPAP 72
L L P + S L L S PP+ + T P+ P L PP L +P
Sbjct: 341 LPLAPPSPSAPPSL--QTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSP 398
Query: 73 RGQRKPGPLGLS 84
Q P PL LS
Sbjct: 399 SLQAPPSPLALS 410
>gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo
sapiens]
Length = 218
Score = 28.1 bits (61), Expect = 1.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 53 NPWPLSLPPPCWTGCLLPAPRGQRKPGPLGLS 84
NP LPPP LP PR + P PLGL+
Sbjct: 46 NPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLA 77
>gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo
sapiens]
Length = 218
Score = 28.1 bits (61), Expect = 1.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 53 NPWPLSLPPPCWTGCLLPAPRGQRKPGPLGLS 84
NP LPPP LP PR + P PLGL+
Sbjct: 46 NPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLA 77
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 26 LLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCLLPAPRGQRKPGP 80
++ P R + P G +P+G P P PPP G P P G R P P
Sbjct: 188 MMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPP--PGMRGPPPPGMRPPRP 240
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,568,214
Number of Sequences: 37866
Number of extensions: 406020
Number of successful extensions: 1280
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 139
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.