Guide to the Human Genome
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Search of human proteins with 239740845

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740845 PREDICTED: hypothetical protein XP_002344070 [Homo
sapiens]
         (222 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740845 PREDICTED: hypothetical protein XP_002344070 [Homo ...   484   e-137
gi|239740737 PREDICTED: hypothetical protein [Homo sapiens]           309   1e-84
gi|239740652 PREDICTED: hypothetical protein [Homo sapiens]           308   3e-84
gi|30425464 transmembrane protein 105 [Homo sapiens]                   35   0.067
gi|239745032 PREDICTED: hypothetical protein XP_002343336 [Homo ...    33   0.19 
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo...    33   0.19 
gi|188536004 zinc finger protein 469 [Homo sapiens]                    33   0.25 
gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens]           32   0.33 
gi|5453810 netrin 3 [Homo sapiens]                                     32   0.33 
gi|154091020 leucine-rich repeats and calponin homology (CH) dom...    31   0.74 
gi|134031945 SCO-spondin [Homo sapiens]                                30   1.3  
gi|194578888 calmegin [Homo sapiens]                                   30   2.1  
gi|4758004 calmegin [Homo sapiens]                                     30   2.1  
gi|239757152 PREDICTED: hypothetical protein [Homo sapiens]            29   2.8  
gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo ...    29   2.8  
gi|21536413 bridging integrator 1 isoform 7 [Homo sapiens]             29   2.8  
gi|21536404 bridging integrator 1 isoform 3 [Homo sapiens]             29   2.8  
gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens]           29   2.8  
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]    29   2.8  
gi|22748975 acyl-malonyl condensing enzyme 1 [Homo sapiens]            29   3.7  
gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]            29   3.7  
gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]            29   3.7  
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ...    29   3.7  
gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo ...    29   3.7  
gi|226423905 splA/ryanodine receptor domain and SOCS box contain...    28   4.8  
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]            28   4.8  
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]            28   4.8  
gi|119220598 apolipoprotein B48 receptor [Homo sapiens]                28   4.8  
gi|156616320 acyl-malonyl condensing enzyme 1-like 3 [Homo sapiens]    28   6.2  
gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]            28   6.2  

>gi|239740845 PREDICTED: hypothetical protein XP_002344070 [Homo
           sapiens]
          Length = 222

 Score =  484 bits (1245), Expect = e-137
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MDARTLGWGRLLGTMDSCFVLGAPWSPGQLGAESCLRFSNESIQTAASVTLTCLRYRRPE 60
           MDARTLGWGRLLGTMDSCFVLGAPWSPGQLGAESCLRFSNESIQTAASVTLTCLRYRRPE
Sbjct: 1   MDARTLGWGRLLGTMDSCFVLGAPWSPGQLGAESCLRFSNESIQTAASVTLTCLRYRRPE 60

Query: 61  TSPGTRNIAFLPKGKHHSLNVVLLLPRDSFLFADTWVEEGQKCTCKKQECGGLTTPGLGP 120
           TSPGTRNIAFLPKGKHHSLNVVLLLPRDSFLFADTWVEEGQKCTCKKQECGGLTTPGLGP
Sbjct: 61  TSPGTRNIAFLPKGKHHSLNVVLLLPRDSFLFADTWVEEGQKCTCKKQECGGLTTPGLGP 120

Query: 121 FAGRKGGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTK 180
           FAGRKGGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTK
Sbjct: 121 FAGRKGGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTK 180

Query: 181 PRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGCGFWRGS 222
           PRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGCGFWRGS
Sbjct: 181 PRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGCGFWRGS 222


>gi|239740737 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 147

 Score =  309 bits (791), Expect = 1e-84
 Identities = 137/144 (95%), Positives = 141/144 (97%), Gaps = 1/144 (0%)

Query: 80  NVVLLLPR-DSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSH 138
           N++++ P  DSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSH
Sbjct: 4   NLIMVFPHLDSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSH 63

Query: 139 KPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGA 198
           KPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGA
Sbjct: 64  KPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGA 123

Query: 199 TEGPAFGRDPGKRRPWGCGFWRGS 222
           TEGPAFGRDPGKRRPWGCGFWRGS
Sbjct: 124 TEGPAFGRDPGKRRPWGCGFWRGS 147


>gi|239740652 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 196

 Score =  308 bits (788), Expect = 3e-84
 Identities = 136/138 (98%), Positives = 137/138 (99%)

Query: 85  LPRDSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSHKPNHWT 144
           L +DSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSHKPNHWT
Sbjct: 59  LEKDSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSHKPNHWT 118

Query: 145 ESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAF 204
           ESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAF
Sbjct: 119 ESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAF 178

Query: 205 GRDPGKRRPWGCGFWRGS 222
           GRDPGKRRPWGCGFWRGS
Sbjct: 179 GRDPGKRRPWGCGFWRGS 196


>gi|30425464 transmembrane protein 105 [Homo sapiens]
          Length = 129

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 169 GAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFG-RDPGKRRPWG 215
           GA+R G V+G    LL W  +T  +R P   +GP    +    R PWG
Sbjct: 19  GAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPWG 66


>gi|239745032 PREDICTED: hypothetical protein XP_002343336 [Homo
           sapiens]
          Length = 828

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 166 SWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEG--PAFGRDPGK--RRPWGCGFW 219
           SWG    GGGV G    L+ WG     VRG G+T G     GR  G+  RR W    W
Sbjct: 597 SWGSVGAGGGV-GGPTGLVPWG-----VRGAGSTGGTFSGLGRAAGELSRRHWAMKSW 648


>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
           sapiens]
          Length = 623

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 19/69 (27%), Positives = 27/69 (39%)

Query: 100 GQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADL 159
           G +   ++ E G          A  +   CP    A S +P  W E P   E+  EPA +
Sbjct: 70  GPRVVERQWEAGSAGAASPEELASPEERACPEEPAAPSPEPRVWLEDPASPEEPGEPAPV 129

Query: 160 EAGFCQSWG 168
             GF   +G
Sbjct: 130 PPGFGAVYG 138


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 116  PGLGPFAGRKGGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGG 175
            P  G    R  G+ P+  +A    P+   +  RG++ K    DL++G      G+  GG 
Sbjct: 919  PARGRPKTRSLGLAPTEADA----PSQGRQQRRGKQLKLFRKDLDSGGAAEGSGSGGGGR 974

Query: 176  VLGTKPRLL-GWG-RYTLRVRGPGATEGPAFGRDPGKRRP 213
              G +PR   G G R   R R P  T+ P    DP  R P
Sbjct: 975  ASGLRPRRNDGLGERPPPRPRRP-RTQAPGSRADPAPRVP 1013


>gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens]
          Length = 362

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 169 GAYRGG-----GVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDP 208
           GAY GG     G+LG++    GW R  LR R P A  GPA    P
Sbjct: 114 GAYAGGPGLVAGLLGSEDHS-GWVRPALRARAPDAFVGPALAPAP 157


>gi|5453810 netrin 3 [Homo sapiens]
          Length = 580

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 17/29 (58%), Positives = 17/29 (58%)

Query: 181 PRLLGWGRYTLRVRGPGATEGPAFGRDPG 209
           PRLL   RY L   GPGA  G A GR PG
Sbjct: 517 PRLLPGRRYLLLGGGPGAAAGGAGGRGPG 545


>gi|154091020 leucine-rich repeats and calponin homology (CH) domain
           containing 2 [Homo sapiens]
          Length = 765

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 21/75 (28%), Positives = 33/75 (44%)

Query: 19  FVLGAPWSPGQLGAESCLRFSNESIQTAASVTLTCLRYRRPETSPGTRNIAFLPKGKHHS 78
           F  G PW+PG L  +  +R  + +++ A S  +  L  R+    PG+            S
Sbjct: 60  FPNGPPWNPGSLQPQHTVRSLDRALEEAGSSGILSLSGRKLRDFPGSGYDLTDTTQADLS 119

Query: 79  LNVVLLLPRDSFLFA 93
            N    +P D +LFA
Sbjct: 120 RNRFTEIPSDVWLFA 134


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 22/110 (20%)

Query: 120 PFAGRKG-------GVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYR 172
           P++GR G       G+CP + +    +P  W  + R               C  WGGA+ 
Sbjct: 58  PWSGRSGLTRSPAPGLCP-IYKPPETRPAKWNRTVRT-------------CCPGWGGAHC 103

Query: 173 GGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGCGFWRGS 222
              +    P    +  +  +++  G+    A   +    RPWG  +W GS
Sbjct: 104 TEALAKASPEGHCFAMWQCQLQA-GSANASAGSLEECCARPWGQSWWDGS 152



 Score = 29.3 bits (64), Expect = 2.8
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 18   CFVLGAPWSPG---QLGAESCLRFSNESIQTAASVTLTCLRYRRPETSPGT 65
            C+ LG P  PG   Q   ESCL  S   + T     LTC +       PG+
Sbjct: 4986 CWHLGRPHLPGSEWQEACESCLCLSGRPVCTQHCSPLTCAQGEEMVLEPGS 5036


>gi|194578888 calmegin [Homo sapiens]
          Length = 610

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 63  PGTRNIAFLPKGKHHSLNVVLLLPRDSFLFAD 94
           PG R +    + KHH+++ VL  P   F+FAD
Sbjct: 106 PGDRGLVLKSRAKHHAISAVLAKP---FIFAD 134


>gi|4758004 calmegin [Homo sapiens]
          Length = 610

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 63  PGTRNIAFLPKGKHHSLNVVLLLPRDSFLFAD 94
           PG R +    + KHH+++ VL  P   F+FAD
Sbjct: 106 PGDRGLVLKSRAKHHAISAVLAKP---FIFAD 134


>gi|239757152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 235

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 23/76 (30%)

Query: 156 PADLEAG-FCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDPGKRR-- 212
           P  L+AG +C  W G  R             WGR  L + GPG   G   G  P   R  
Sbjct: 121 PVHLKAGKWCVCWPGVVR-------------WGRGCLELAGPGPPCGRLRGLGPSPPRAA 167

Query: 213 ------PWGCGFWRGS 222
                   GCG W GS
Sbjct: 168 RPSVPAAAGCG-WAGS 182


>gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo
           sapiens]
          Length = 235

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 23/76 (30%)

Query: 156 PADLEAG-FCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDPGKRR-- 212
           P  L+AG +C  W G  R             WGR  L + GPG   G   G  P   R  
Sbjct: 121 PVHLKAGKWCVCWPGVVR-------------WGRGCLELAGPGPPCGRLRGLGPSPPRAA 167

Query: 213 ------PWGCGFWRGS 222
                   GCG W GS
Sbjct: 168 RPSVPAAAGCG-WAGS 182


>gi|21536413 bridging integrator 1 isoform 7 [Homo sapiens]
          Length = 475

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 126 GGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEAGFCQSW 167
           GG  P  G      P+  TESP G     EP+  E  F  SW
Sbjct: 289 GGATP--GATLPKSPSQPTESPAGSLPSGEPSAAEGTFAVSW 328


>gi|21536404 bridging integrator 1 isoform 3 [Homo sapiens]
          Length = 506

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 126 GGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEAGFCQSW 167
           GG  P  G      P+  TESP G     EP+  E  F  SW
Sbjct: 320 GGATP--GATLPKSPSQPTESPAGSLPSGEPSAAEGTFAVSW 359


>gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens]
          Length = 307

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 183 LLGWGRYTLRVRGPGATEGPAFGRDPGK--RRPW 214
           L GW    LR  GPG+   PA G  P +  RR W
Sbjct: 48  LRGWAARALRCFGPGSRGSPASGPGPRRVQRRAW 81


>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
          Length = 955

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 96  WVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPS 131
           W E+G K TC+K  C    +    P   R GG CPS
Sbjct: 408 WCEDG-KVTCEKVRCEAACSH---PIPSRDGGCCPS 439


>gi|22748975 acyl-malonyl condensing enzyme 1 [Homo sapiens]
          Length = 338

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 11  LLGTMDSCFVLGAPWSPGQLGAESCLRFSNESIQTAASVTLTCLRYRRPETSP 63
           LLG++   FVL AP  P  L + SC+     ++   A V+ TC+ Y   +  P
Sbjct: 231 LLGSVPGLFVLQAPVLPSDLLSWSCV----GAVGILALVSFTCVGYAVTKAHP 279


>gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 314

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 164 CQSWGGAYRGGGVLGTK-PRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGCG 217
           C+  GG + G  + G+  PR L   R   R+RG G   G      PG R P G G
Sbjct: 134 CRGGGGGFSGRRLGGSPWPRWLASSRR--RIRGTGVPAGFCHLDGPGSRVPAGAG 186


>gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 314

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 164 CQSWGGAYRGGGVLGTK-PRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGCG 217
           C+  GG + G  + G+  PR L   R   R+RG G   G      PG R P G G
Sbjct: 134 CRGGGGGFSGRRLGGSPWPRWLASSRR--RIRGTGVPAGFCHLDGPGSRVPAGAG 186


>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
           sapiens]
          Length = 800

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 143 WTES--PRGEEKKAEPADLEAGF-------CQSWGGAYRGGGVLGTKP--RLLGWGRYTL 191
           W ES  PRG +  AE    + G            G +  G G+    P  R   W   +L
Sbjct: 337 WVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSL 396

Query: 192 RVRGPGATEGPAFGRDPGKRR 212
           R   PG TEG   G    +RR
Sbjct: 397 RTPTPGLTEGGGTGLPSKQRR 417


>gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo
           sapiens]
          Length = 314

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 164 CQSWGGAYRGGGVLGTK-PRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGCG 217
           C+  GG + G  + G+  PR L   R   R+RG G   G      PG R P G G
Sbjct: 134 CRGGGGGFSGRRLGGSPWPRWLASSRR--RIRGTGVPAGFCHLDGPGSRVPAGAG 186


>gi|226423905 splA/ryanodine receptor domain and SOCS box containing
           2 isoform 2 [Homo sapiens]
          Length = 267

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 168 GGAYRGGGVLGTKPRLLG------WGRYTLRVRGPGATEGPAFGR 206
           GG Y G    G K R L       WG+  +R+R  G   G A+GR
Sbjct: 183 GGTYLGPAFRGLKGRTLYPAVSAVWGQCQVRIRYLGERRGEAWGR 227


>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 396

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 113 LTTPGLGPFAG--RKGGVCPSVGEAWSHKPNHWTESPRGEEKK---AEPADLEAGFCQSW 167
           +T P     AG  R  G+  S G AW+         PRG E +     PA        S 
Sbjct: 9   VTVPRAAGSAGQRRAPGLPRSSGPAWAESRAR-PPRPRGLEPRHPPGSPALRPTDRTCSS 67

Query: 168 GGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDP 208
             A  GGGV G +P  +  G++    RG     G    RDP
Sbjct: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDP 108


>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 396

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 113 LTTPGLGPFAG--RKGGVCPSVGEAWSHKPNHWTESPRGEEKK---AEPADLEAGFCQSW 167
           +T P     AG  R  G+  S G AW+         PRG E +     PA        S 
Sbjct: 9   VTVPRAAGSAGQRRAPGLPRSSGPAWAESRAR-PPRPRGLEPRHPPGSPALRPTDRTCSS 67

Query: 168 GGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDP 208
             A  GGGV G +P  +  G++    RG     G    RDP
Sbjct: 68  SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDP 108


>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
          Length = 1088

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%)

Query: 98  EEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSHK 139
           EEG+    + QE  G T    GP        CPS+GEA++ +
Sbjct: 682 EEGEASVSENQELDGSTGADAGP--------CPSLGEAYARE 715


>gi|156616320 acyl-malonyl condensing enzyme 1-like 3 [Homo sapiens]
          Length = 338

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 11  LLGTMDSCFVLGAPWSPGQLGAESCLRFSNESIQTAASVTLTCLRYRRPETSP 63
           LLG++   FVL  P  P  L + SC+     ++   A V+ TC+ Y   +  P
Sbjct: 231 LLGSVPGLFVLQPPVLPSDLPSWSCV----GAVGILALVSFTCVSYAVTKAHP 279


>gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 430

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 167 WGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGC 216
           WG    GG + GT   +LGWGR   R   PG++   A       RR   C
Sbjct: 106 WGS---GGALCGTAAGMLGWGRERGR---PGSSSAVALESQMTLRRKKRC 149


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.139    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,187,147
Number of Sequences: 37866
Number of extensions: 605557
Number of successful extensions: 1527
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1512
Number of HSP's gapped (non-prelim): 50
length of query: 222
length of database: 18,247,518
effective HSP length: 98
effective length of query: 124
effective length of database: 14,536,650
effective search space: 1802544600
effective search space used: 1802544600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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