Guide to the Human Genome
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Name: LOC100294243 Sequence: fasta or formatted (305aa) NCBI GI: 239740788
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         30           4
 C cysteine            3.3         10           1
 D aspartate           3.3         10           1
 E glutamate           5.6         17           2
 F phenylalanine       1.6          5           1
 G glycine             6.6         20           1
 H histidine           2.6          8           1
 I isoleucine          4.9         15           2
 K lysine              3.0          9           2
 L leucine             8.5         26           1
 M methionine          2.6          8           1
 N asparagine          2.6          8           1
 P proline            10.5         32           2
 Q glutamine           2.6          8           1
 R arginine            8.5         26           2
 S serine              9.5         29           2
 T threonine           5.6         17           1
 V valine              4.6         14           1
 W tryptophan          1.6          5           1
 Y tyrosine            2.6          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294256          1.000   PREDICTED: hypothetical protein XP_002344069 
LOC100293693          0.736   PREDICTED: hypothetical protein 
LOC100289875          0.401   PREDICTED: hypothetical protein XP_002346829 
LOC100287406          0.401   PREDICTED: hypothetical protein XP_002342662 
LOC100294295          0.401   PREDICTED: hypothetical protein XP_002344097 
LOC100294208          0.401   PREDICTED: hypothetical protein 
LOC100294142          0.401   PREDICTED: hypothetical protein 
LOC100294094          0.401   PREDICTED: hypothetical protein 
LOC100294131          0.401   PREDICTED: hypothetical protein 
SOLH                  0.017   small optic lobes 
LOC100293249          0.013   PREDICTED: similar to hCG2040393 
LOC100291245          0.013   PREDICTED: hypothetical protein XP_002347031 
LOC100287846          0.013   PREDICTED: hypothetical protein XP_002342883 
TTN                   0.012   titin isoform N2-A 
NID1                  0.012   nidogen 1 precursor 
GNAS                  0.012   GNAS complex locus XLas 
LRRC41                0.012   MUF1 protein 
LOC729370             0.010   PREDICTED: hypothetical protein 
FHOD3                 0.010   formin homology 2 domain containing 3 
TESK1                 0.010   testis-specific protein kinase 1 
PRSS36                0.010   protease, serine, 36 
PRRG3                 0.010   proline rich Gla (G-carboxyglutamic acid) 3 (transme...
CHCHD2                0.010   coiled-coil-helix-coiled-coil-helix domain containing...
LOC100130128          0.008   PREDICTED: hypothetical protein 
LOC100130128          0.008   PREDICTED: hypothetical protein 
KRTAP4-9              0.008   PREDICTED: keratin associated protein 4-9 
LOC100130128          0.008   PREDICTED: hypothetical protein 
SLC6A5                0.008   solute carrier family 6 (neurotransmitter transporte...
LOC100292629          0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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