Guide to the Human Genome
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Name: LOC100293693 Sequence: fasta or formatted (250aa) NCBI GI: 239754275
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         28           4
 C cysteine            3.2          8           1
 D aspartate           2.8          7           1
 E glutamate           3.2          8           1
 F phenylalanine       1.2          3           1
 G glycine             6.8         17           1
 H histidine           2.4          6           1
 I isoleucine          5.2         13           2
 K lysine              3.6          9           2
 L leucine             7.2         18           1
 M methionine          2.4          6           1
 N asparagine          2.4          6           1
 P proline             9.6         24           1
 Q glutamine           2.8          7           1
 R arginine            8.8         22           2
 S serine             11.2         28           2
 T threonine           7.2         18           2
 V valine              4.8         12           1
 W tryptophan          1.2          3           1
 Y tyrosine            2.8          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294256          0.920   PREDICTED: hypothetical protein XP_002344069 
LOC100294243          0.920   PREDICTED: hypothetical protein 
LOC100289875          0.501   PREDICTED: hypothetical protein XP_002346829 
LOC100287406          0.501   PREDICTED: hypothetical protein XP_002342662 
LOC100294295          0.501   PREDICTED: hypothetical protein XP_002344097 
LOC100294208          0.501   PREDICTED: hypothetical protein 
LOC100294142          0.501   PREDICTED: hypothetical protein 
LOC100294094          0.501   PREDICTED: hypothetical protein 
LOC100294131          0.501   PREDICTED: hypothetical protein 
SOLH                  0.021   small optic lobes 
LOC100293249          0.016   PREDICTED: similar to hCG2040393 
LOC100291245          0.016   PREDICTED: hypothetical protein XP_002347031 
LOC100287846          0.016   PREDICTED: hypothetical protein XP_002342883 
TTN                   0.014   titin isoform N2-A 
NID1                  0.014   nidogen 1 precursor 
GNAS                  0.014   GNAS complex locus XLas 
LRRC41                0.014   MUF1 protein 
LOC729370             0.012   PREDICTED: hypothetical protein 
FHOD3                 0.012   formin homology 2 domain containing 3 
TESK1                 0.012   testis-specific protein kinase 1 
PRSS36                0.012   protease, serine, 36 
PRRG3                 0.012   proline rich Gla (G-carboxyglutamic acid) 3 (transme...
CHCHD2                0.012   coiled-coil-helix-coiled-coil-helix domain containing...
LOC100130128          0.010   PREDICTED: hypothetical protein 
LOC100130128          0.010   PREDICTED: hypothetical protein 
KRTAP4-9              0.010   PREDICTED: keratin associated protein 4-9 
LOC100130128          0.010   PREDICTED: hypothetical protein 
SLC6A5                0.010   solute carrier family 6 (neurotransmitter transporte...
LOC100292629          0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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