Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289875 Sequence: fasta or formatted (132aa) NCBI GI: 239748810
Description:

PREDICTED: hypothetical protein XP_002346829

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         17           4
 C cysteine            3.8          5           1
 D aspartate           1.5          2           1
 E glutamate           3.0          4           1
 F phenylalanine       0.8          1           1
 G glycine             4.5          6           1
 H histidine           1.5          2           1
 I isoleucine          1.5          2           1
 K lysine              2.3          3           1
 L leucine             8.3         11           1
 M methionine          3.0          4           1
 N asparagine          0.8          1           1
 P proline            11.4         15           1
 Q glutamine           3.0          4           1
 R arginine           10.6         14           2
 S serine             14.4         19           2
 T threonine           7.6         10           1
 V valine              6.1          8           1
 W tryptophan          1.5          2           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346829 
LOC100293693          1.000   PREDICTED: hypothetical protein 
LOC100287406          1.000   PREDICTED: hypothetical protein XP_002342662 
LOC100294295          1.000   PREDICTED: hypothetical protein XP_002344097 
LOC100294256          1.000   PREDICTED: hypothetical protein XP_002344069 
LOC100294243          1.000   PREDICTED: hypothetical protein 
LOC100294208          1.000   PREDICTED: hypothetical protein 
LOC100294142          1.000   PREDICTED: hypothetical protein 
LOC100294094          1.000   PREDICTED: hypothetical protein 
LOC100294131          1.000   PREDICTED: hypothetical protein 
SOLH                  0.041   small optic lobes 
LOC100293249          0.033   PREDICTED: similar to hCG2040393 
LOC100291245          0.033   PREDICTED: hypothetical protein XP_002347031 
LOC100287846          0.033   PREDICTED: hypothetical protein XP_002342883 
TTN                   0.029   titin isoform N2-A 
GNAS                  0.029   GNAS complex locus XLas 
LRRC41                0.029   MUF1 protein 
LOC729370             0.025   PREDICTED: hypothetical protein 
FHOD3                 0.025   formin homology 2 domain containing 3 
TESK1                 0.025   testis-specific protein kinase 1 
PRSS36                0.025   protease, serine, 36 
CHCHD2                0.025   coiled-coil-helix-coiled-coil-helix domain containing...
LOC100130128          0.021   PREDICTED: hypothetical protein 
LOC100130128          0.021   PREDICTED: hypothetical protein 
KRTAP4-9              0.021   PREDICTED: keratin associated protein 4-9 
LOC100130128          0.021   PREDICTED: hypothetical protein 
SLC6A5                0.021   solute carrier family 6 (neurotransmitter transporte...
LOC100292629          0.021   PREDICTED: hypothetical protein 
LOC100293375          0.021   PREDICTED: hypothetical protein 
LOC100289960          0.021   PREDICTED: hypothetical protein XP_002346853 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press