BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239509115 PREDICTED: hypothetical protein [Homo sapiens] (181 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169172040 PREDICTED: hypothetical protein [Homo sapiens] 393 e-110 gi|169170042 PREDICTED: hypothetical protein [Homo sapiens] 393 e-110 gi|239509115 PREDICTED: hypothetical protein [Homo sapiens] 393 e-110 gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 39 0.002 gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012 gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012 gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012 gi|113430659 PREDICTED: hypothetical protein [Homo sapiens] 35 0.035 gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 35 0.035 gi|113430175 PREDICTED: hypothetical protein [Homo sapiens] 35 0.035 gi|5032105 small optic lobes [Homo sapiens] 35 0.035 gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 35 0.046 gi|14149724 mesoderm posterior 1 [Homo sapiens] 34 0.060 gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 34 0.078 gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 34 0.078 gi|169217315 PREDICTED: hypothetical protein [Homo sapiens] 33 0.10 gi|239757070 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13 gi|239751580 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13 gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo ... 33 0.13 gi|171543895 ataxin 2 [Homo sapiens] 33 0.13 gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 33 0.17 gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 33 0.17 gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 33 0.17 gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 33 0.17 gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 32 0.23 gi|239754514 PREDICTED: hypothetical protein [Homo sapiens] 32 0.23 gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 32 0.23 gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 32 0.23 gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 32 0.23 gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 32 0.23 >gi|169172040 PREDICTED: hypothetical protein [Homo sapiens] Length = 181 Score = 393 bits (1010), Expect = e-110 Identities = 181/181 (100%), Positives = 181/181 (100%) Query: 1 MRAAEGGVGPWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRT 60 MRAAEGGVGPWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRT Sbjct: 1 MRAAEGGVGPWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRT 60 Query: 61 GGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRAR 120 GGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRAR Sbjct: 61 GGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRAR 120 Query: 121 GAAPAPGSPALNRLILHSGDSNGHAFIYSSPPFRQDSQNTAEWPRDHLPKTPARPEVGRR 180 GAAPAPGSPALNRLILHSGDSNGHAFIYSSPPFRQDSQNTAEWPRDHLPKTPARPEVGRR Sbjct: 121 GAAPAPGSPALNRLILHSGDSNGHAFIYSSPPFRQDSQNTAEWPRDHLPKTPARPEVGRR 180 Query: 181 N 181 N Sbjct: 181 N 181 >gi|169170042 PREDICTED: hypothetical protein [Homo sapiens] Length = 181 Score = 393 bits (1010), Expect = e-110 Identities = 181/181 (100%), Positives = 181/181 (100%) Query: 1 MRAAEGGVGPWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRT 60 MRAAEGGVGPWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRT Sbjct: 1 MRAAEGGVGPWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRT 60 Query: 61 GGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRAR 120 GGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRAR Sbjct: 61 GGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRAR 120 Query: 121 GAAPAPGSPALNRLILHSGDSNGHAFIYSSPPFRQDSQNTAEWPRDHLPKTPARPEVGRR 180 GAAPAPGSPALNRLILHSGDSNGHAFIYSSPPFRQDSQNTAEWPRDHLPKTPARPEVGRR Sbjct: 121 GAAPAPGSPALNRLILHSGDSNGHAFIYSSPPFRQDSQNTAEWPRDHLPKTPARPEVGRR 180 Query: 181 N 181 N Sbjct: 181 N 181 >gi|239509115 PREDICTED: hypothetical protein [Homo sapiens] Length = 181 Score = 393 bits (1010), Expect = e-110 Identities = 181/181 (100%), Positives = 181/181 (100%) Query: 1 MRAAEGGVGPWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRT 60 MRAAEGGVGPWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRT Sbjct: 1 MRAAEGGVGPWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRT 60 Query: 61 GGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRAR 120 GGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRAR Sbjct: 61 GGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRAR 120 Query: 121 GAAPAPGSPALNRLILHSGDSNGHAFIYSSPPFRQDSQNTAEWPRDHLPKTPARPEVGRR 180 GAAPAPGSPALNRLILHSGDSNGHAFIYSSPPFRQDSQNTAEWPRDHLPKTPARPEVGRR Sbjct: 121 GAAPAPGSPALNRLILHSGDSNGHAFIYSSPPFRQDSQNTAEWPRDHLPKTPARPEVGRR 180 Query: 181 N 181 N Sbjct: 181 N 181 >gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo sapiens] Length = 1751 Score = 39.3 bits (90), Expect = 0.002 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 9/107 (8%) Query: 27 LGPGRSAGPRSTPR---WTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVPELGTCWG 83 +GP AGP STP+ T GIP + T G L + S P LG W Sbjct: 149 VGPLALAGPSSTPQENGTTLWPSRGIPSSPGAHTTEAGTLPAPT-----PSPPSLGRPWA 203 Query: 84 EARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGSPA 130 P P GR L + P W + D ++G +PA +P+ Sbjct: 204 PLTGPSVPPPSS-GRASLSSLLGGAPPWGSLQDPDSQGLSPAAAAPS 249 >gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] Length = 801 Score = 36.6 bits (83), Expect = 0.012 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 72 KASVPELGTCWGEARPRRCPRPRCPG---RTGLVPGVLSGPRWRRVPDSRARGAAP 124 KA E +ARPRRC PG R ++PG S R R+ +SR RG P Sbjct: 10 KAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGRGVTP 65 >gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] Length = 801 Score = 36.6 bits (83), Expect = 0.012 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 72 KASVPELGTCWGEARPRRCPRPRCPG---RTGLVPGVLSGPRWRRVPDSRARGAAP 124 KA E +ARPRRC PG R ++PG S R R+ +SR RG P Sbjct: 10 KAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGRGVTP 65 >gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] Length = 801 Score = 36.6 bits (83), Expect = 0.012 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 72 KASVPELGTCWGEARPRRCPRPRCPG---RTGLVPGVLSGPRWRRVPDSRARGAAP 124 KA E +ARPRRC PG R ++PG S R R+ +SR RG P Sbjct: 10 KAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGRGVTP 65 >gi|113430659 PREDICTED: hypothetical protein [Homo sapiens] Length = 2061 Score = 35.0 bits (79), Expect = 0.035 Identities = 36/123 (29%), Positives = 46/123 (37%), Gaps = 30/123 (24%) Query: 17 RERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVP 76 R R CG + L PG G RS +P+ + P G LRG + +A P Sbjct: 315 RSRACGAIALT-PGVLCGVRSR----------VPKDITPTP---GALRGYKSWVCRAIAP 360 Query: 77 ELGTCWGEARPRRCPRPRCPGRTG-----------LVPGVLSGPRWRRVPDSRARGAAPA 125 G G+ R R PG G PG L G R S ++ APA Sbjct: 361 TPGALRGDRSAARTAIVRTPGALGRDRSRARSAIASTPGTLQGNR-----SSVSKAIAPA 415 Query: 126 PGS 128 PG+ Sbjct: 416 PGA 418 Score = 33.5 bits (75), Expect = 0.10 Identities = 42/139 (30%), Positives = 52/139 (37%), Gaps = 28/139 (20%) Query: 52 AVAPRETRTGGLRGESWGLRKASVPELGT-----CW---------GEARPRRCPRPRCPG 97 A+AP G +RG+S R A P G W G R R R R Sbjct: 1170 AIAPTP---GTMRGDSSTARMAIAPSAGALRGDRSWKRKAIASTPGALRGNRSDRSRKRK 1226 Query: 98 RTGLVPGVLSGPRWRRVPDSRARGA-APAPGSPALNRLILHSGDSNGHAFIYSSPPFRQD 156 PG L G R R SR R A AP PG+P ++R S I +P D Sbjct: 1227 AIASTPGALLGNRSDR---SRKRKAIAPTPGAPRIDR-------SPACRAIAPTPGALGD 1276 Query: 157 SQNTAEWPRDHLPKTPARP 175 +TA P P+ + P Sbjct: 1277 DSSTAIAPTPGTPRGDSSP 1295 Score = 29.6 bits (65), Expect = 1.5 Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 14/100 (14%) Query: 30 GRSAGPRS-TPRWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPR 88 GRS RS P+ LC D +A + G RG +A P G+ G Sbjct: 260 GRSWACRSIAPKPGSLCGDR-SQASRAIDPTLGARRGGRSRAHRAIAPTPGSLCGN---- 314 Query: 89 RCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGS 128 R R G L PGVL G R RVP + P PG+ Sbjct: 315 ---RSRACGAIALTPGVLCGVR-SRVP----KDITPTPGA 346 Score = 28.1 bits (61), Expect = 4.3 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 23/120 (19%) Query: 52 AVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPG--------RTGLVP 103 A+AP G +RG+S R A+ P G G+ +R PG R+ Sbjct: 1041 AIAPTP---GTMRGDSSTARTATAPSPGALRGDRSWKRKAIASTPGALHGNRSDRSRKCK 1097 Query: 104 GVLSGPRWRRVPDSRA-RGAAPAPG------SPALNRLI-----LHSGDSNGHAFIYSSP 151 + S P V S A R P PG SP +I LH S H I S+P Sbjct: 1098 AIASTPGTLHVERSPALRAIVPTPGTLGRDSSPGRTSIIPSPGALHGDRSPAHLDIASTP 1157 >gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] Length = 2028 Score = 35.0 bits (79), Expect = 0.035 Identities = 36/123 (29%), Positives = 46/123 (37%), Gaps = 30/123 (24%) Query: 17 RERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVP 76 R R CG + L PG G RS +P+ + P G LRG + +A P Sbjct: 315 RSRACGAIALT-PGVLCGVRSR----------VPKDITPTP---GALRGYKSWVCRAIAP 360 Query: 77 ELGTCWGEARPRRCPRPRCPGRTG-----------LVPGVLSGPRWRRVPDSRARGAAPA 125 G G+ R R PG G PG L G R S ++ APA Sbjct: 361 TPGALRGDRSAARTAIVRTPGALGRDRSRARSAIASTPGTLQGNR-----SSVSKAIAPA 415 Query: 126 PGS 128 PG+ Sbjct: 416 PGA 418 Score = 33.5 bits (75), Expect = 0.10 Identities = 42/139 (30%), Positives = 52/139 (37%), Gaps = 28/139 (20%) Query: 52 AVAPRETRTGGLRGESWGLRKASVPELGT-----CW---------GEARPRRCPRPRCPG 97 A+AP G +RG+S R A P G W G R R R R Sbjct: 1138 AIAPTP---GTMRGDSSTARMAIAPSAGALRGDRSWKRKAIASTPGALRGNRSDRSRKRK 1194 Query: 98 RTGLVPGVLSGPRWRRVPDSRARGA-APAPGSPALNRLILHSGDSNGHAFIYSSPPFRQD 156 PG L G R R SR R A AP PG+P ++R S I +P D Sbjct: 1195 AIASTPGALLGNRSDR---SRKRKAIAPTPGAPRIDR-------SPACRAIAPTPGALGD 1244 Query: 157 SQNTAEWPRDHLPKTPARP 175 +TA P P+ + P Sbjct: 1245 DSSTAIAPTPGTPRGDSSP 1263 Score = 29.6 bits (65), Expect = 1.5 Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 14/100 (14%) Query: 30 GRSAGPRS-TPRWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPR 88 GRS RS P+ LC D +A + G RG +A P G+ G Sbjct: 260 GRSWACRSIAPKPGSLCGDR-SQASRAIDPTLGARRGGRSRAHRAIAPTPGSLCGN---- 314 Query: 89 RCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGS 128 R R G L PGVL G R RVP + P PG+ Sbjct: 315 ---RSRACGAIALTPGVLCGVR-SRVP----KDITPTPGA 346 Score = 28.1 bits (61), Expect = 4.3 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 23/120 (19%) Query: 52 AVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPG--------RTGLVP 103 A+AP G +RG+S R A+ P G G+ +R PG R+ Sbjct: 1009 AIAPTP---GTMRGDSSTARTATAPSPGALRGDRSWKRKAIASTPGALHGNRSDRSRKCK 1065 Query: 104 GVLSGPRWRRVPDSRA-RGAAPAPG------SPALNRLI-----LHSGDSNGHAFIYSSP 151 + S P V S A R P PG SP +I LH S H I S+P Sbjct: 1066 AIASTPGTLHVERSPALRAIVPTPGTLGRDSSPGRTSIIPSPGALHGDRSPAHLDIASTP 1125 >gi|113430175 PREDICTED: hypothetical protein [Homo sapiens] Length = 1934 Score = 35.0 bits (79), Expect = 0.035 Identities = 36/123 (29%), Positives = 46/123 (37%), Gaps = 30/123 (24%) Query: 17 RERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVP 76 R R CG + L PG G RS +P+ + P G LRG + +A P Sbjct: 315 RSRACGAIALT-PGVLCGVRSR----------VPKDITPTP---GALRGYKSWVCRAIAP 360 Query: 77 ELGTCWGEARPRRCPRPRCPGRTG-----------LVPGVLSGPRWRRVPDSRARGAAPA 125 G G+ R R PG G PG L G R S ++ APA Sbjct: 361 TPGALRGDRSAARTAIVRTPGALGRDRSRARSAIASTPGTLQGNR-----SSVSKAIAPA 415 Query: 126 PGS 128 PG+ Sbjct: 416 PGA 418 Score = 33.5 bits (75), Expect = 0.10 Identities = 42/139 (30%), Positives = 52/139 (37%), Gaps = 28/139 (20%) Query: 52 AVAPRETRTGGLRGESWGLRKASVPELGT-----CW---------GEARPRRCPRPRCPG 97 A+AP G +RG+S R A P G W G R R R R Sbjct: 1044 AIAPTP---GTMRGDSSTARMAIAPSAGALRGDRSWKRKAIASTPGALRGNRSDRSRKRK 1100 Query: 98 RTGLVPGVLSGPRWRRVPDSRARGA-APAPGSPALNRLILHSGDSNGHAFIYSSPPFRQD 156 PG L G R R SR R A AP PG+P ++R S I +P D Sbjct: 1101 AIASTPGALLGNRSDR---SRKRKAIAPTPGAPRIDR-------SPACRAIAPTPGALGD 1150 Query: 157 SQNTAEWPRDHLPKTPARP 175 +TA P P+ + P Sbjct: 1151 DSSTAIAPTPGTPRGDSSP 1169 Score = 29.6 bits (65), Expect = 1.5 Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 14/100 (14%) Query: 30 GRSAGPRS-TPRWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPR 88 GRS RS P+ LC D +A + G RG +A P G+ G Sbjct: 260 GRSWACRSIAPKPGSLCGDR-SQASRAIDPTLGARRGGRSRAHRAIAPTPGSLCGN---- 314 Query: 89 RCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGS 128 R R G L PGVL G R RVP + P PG+ Sbjct: 315 ---RSRACGAIALTPGVLCGVR-SRVP----KDITPTPGA 346 Score = 28.1 bits (61), Expect = 4.3 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 23/120 (19%) Query: 52 AVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPG--------RTGLVP 103 A+AP G +RG+S R A+ P G G+ +R PG R+ Sbjct: 915 AIAPTP---GTMRGDSSTARTATAPSPGALRGDRSWKRKAIASTPGALHGNRSDRSRKCK 971 Query: 104 GVLSGPRWRRVPDSRA-RGAAPAPG------SPALNRLI-----LHSGDSNGHAFIYSSP 151 + S P V S A R P PG SP +I LH S H I S+P Sbjct: 972 AIASTPGTLHVERSPALRAIVPTPGTLGRDSSPGRTSIIPSPGALHGDRSPAHLDIASTP 1031 >gi|5032105 small optic lobes [Homo sapiens] Length = 1086 Score = 35.0 bits (79), Expect = 0.035 Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 28 GPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRTGGLRGES-WGLRKASV---PELGTCWG 83 GP R+AG +T C D E +E G W + ++ P +C Sbjct: 106 GPVRTAGLVATEPARGQCEDKDEEEKEEQEEEEGAAEPRGGWACPRCTLHNTPVASSCSV 165 Query: 84 EARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGSP 129 PRR PR P +VP V++ + VP AAP PG P Sbjct: 166 CGGPRRLSLPRIPPEALVVPEVVAPAGFHVVP------AAPPPGLP 205 >gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] Length = 2303 Score = 34.7 bits (78), Expect = 0.046 Identities = 40/149 (26%), Positives = 56/149 (37%), Gaps = 8/149 (5%) Query: 28 GPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVP-ELGTCWGEAR 86 G R AG R+ P L R A ++ G + + R+ +P L Sbjct: 900 GGRREAGSRAHP----LLRLKAAHASLSNDSLNSGSASDGYCPREHMLPCPLAALASRRE 955 Query: 87 PRRCPRPRCPGRTGL-VPGVLSGPRWRRVPDSRARGAAPAPGSPALNRLILHSGDSNGHA 145 RC +PR P R L +PG + P R + AR SP + L G S A Sbjct: 956 DPRCGQPR-PSRLDLDLPGCQAEPPAREATSADAR-VRTIKLSPTYQHVPLLEGASRAGA 1013 Query: 146 FIYSSPPFRQDSQNTAEWPRDHLPKTPAR 174 + P ++ A P DHL K P + Sbjct: 1014 EPLAGPGISPGARKQAWLPADHLSKVPEK 1042 >gi|14149724 mesoderm posterior 1 [Homo sapiens] Length = 268 Score = 34.3 bits (77), Expect = 0.060 Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 9/101 (8%) Query: 31 RSAGPRSTPRWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPRRC 90 R G +PR LC D P + R G +G+ GL S G WG P C Sbjct: 152 RQRGDAGSPRGCPLCPDDCPAQMQTRTQAEG--QGQGRGLGLVSAVRAGASWGS--PPAC 207 Query: 91 PRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGSPAL 131 P R P + + P+ +A P+P SP L Sbjct: 208 PGARAAPEPRDPPALFAE---AACPEGQA--MEPSPPSPLL 243 >gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] Length = 350 Score = 33.9 bits (76), Expect = 0.078 Identities = 39/139 (28%), Positives = 47/139 (33%), Gaps = 35/139 (25%) Query: 10 PWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVA--------PRETRTG 61 P GR W R GP PRS TR R +PEA PR Sbjct: 115 PTGRRWRRRP--------GPSPPLQPRSRHPHTRYPR-AVPEATPLRPPPGTRPRAKSRP 165 Query: 62 GLRGESWGLRKASVPELGTCWGEARPRRCPRP-----------RCPGRTGLVPGVLSGPR 110 G R + R + E G G+ RP R PRP P + PG +G R Sbjct: 166 GCRSSPFPARSRTPGEAGPPRGDPRP-RAPRPGDHPRRSPALRETPSLSPPSPGRRNGKR 224 Query: 111 WRRVPDSRARGAAPAPGSP 129 + +G P P P Sbjct: 225 ------AAGKGTTPQPQPP 237 >gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] Length = 1745 Score = 33.9 bits (76), Expect = 0.078 Identities = 45/136 (33%), Positives = 55/136 (40%), Gaps = 17/136 (12%) Query: 2 RAAEGGVGPWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVA----PRE 57 R AEG GP G+ E G GLLGP S GP P T + DG P A P E Sbjct: 583 RGAEGPPGPTGQAGEP----GPRGLLGPRGSPGPTGRPGVTGI--DGAPGAKGNVGPPGE 636 Query: 58 TRTGGLRGESWGLRKASVPE--LGTCWGEARPRRCPRPRCPGRTGLV--PGVLSGPRWRR 113 G +G + G + P+ +GT + P P PG G + PG GP + Sbjct: 637 PGPPGQQG-NHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPG-HEGPTGEK 694 Query: 114 VPDSRARGAAPAPGSP 129 A P PG P Sbjct: 695 GAQGPPGSAGP-PGYP 709 >gi|169217315 PREDICTED: hypothetical protein [Homo sapiens] Length = 2061 Score = 33.5 bits (75), Expect = 0.10 Identities = 35/123 (28%), Positives = 45/123 (36%), Gaps = 30/123 (24%) Query: 17 RERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVP 76 R R CG + L PG G RS +P+ + P G LRG + +A P Sbjct: 315 RSRACGAIALT-PGVLCGVRSR----------VPKDITPTP---GALRGYKSWVCRAIAP 360 Query: 77 ELGTCWGEARPRRCPRPRCPGRTG-----------LVPGVLSGPRWRRVPDSRARGAAPA 125 G G+ R R PG G PG L G R S ++ AP Sbjct: 361 TPGALRGDRSAARTAVVRTPGALGRDRSRARSAIASTPGTLQGNR-----SSVSKAIAPT 415 Query: 126 PGS 128 PG+ Sbjct: 416 PGA 418 Score = 32.7 bits (73), Expect = 0.17 Identities = 38/138 (27%), Positives = 50/138 (36%), Gaps = 26/138 (18%) Query: 52 AVAPRETRTGGLRGESWGLRKASVPELGT-----CW---------GEARPRRCPRPRCPG 97 A+AP G +RG+S R A P G W G R R R R Sbjct: 1170 AIAPTP---GTMRGDSSTARMAIAPSAGALRGDRSWKRKAIASTPGALRGNRSDRSRKRK 1226 Query: 98 RTGLVPGVLSGPRWRRVPDSRARGAAPAPGSPALNRLILHSGDSNGHAFIYSSPPFRQDS 157 PG L G R R + + AP PG+P ++R S I +P D Sbjct: 1227 AIASTPGALLGNRSDR--SRKHKAIAPTPGAPRIDR-------SPACRAIAPTPGALGDD 1277 Query: 158 QNTAEWPRDHLPKTPARP 175 +TA P P+ + P Sbjct: 1278 SSTAIAPTPGTPRGDSSP 1295 Score = 29.6 bits (65), Expect = 1.5 Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 14/100 (14%) Query: 30 GRSAGPRS-TPRWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPR 88 GRS RS P+ LC D +A + G RG +A P G+ G Sbjct: 260 GRSWACRSIAPKPGSLCGDR-SQASRAIDPTLGARRGGRSRAHRAIAPTPGSLCGN---- 314 Query: 89 RCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGS 128 R R G L PGVL G R RVP + P PG+ Sbjct: 315 ---RSRACGAIALTPGVLCGVR-SRVP----KDITPTPGA 346 Score = 28.1 bits (61), Expect = 4.3 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 23/120 (19%) Query: 52 AVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPG--------RTGLVP 103 A+AP G +RG+S R A+ P G G+ +R PG R+ Sbjct: 1041 AIAPTP---GTMRGDSSTARTATAPSPGALRGDRSWKRKAIASTPGALHGNRSDRSRKCK 1097 Query: 104 GVLSGPRWRRVPDSRA-RGAAPAPG------SPALNRLI-----LHSGDSNGHAFIYSSP 151 + S P V S A R P PG SP +I LH S H I S+P Sbjct: 1098 AIASTPGTLHVERSPALRAIVPTPGTLGRDSSPGRTSIIPSPGALHGDRSPAHLDIASTP 1157 >gi|239757070 PREDICTED: hypothetical protein [Homo sapiens] Length = 195 Score = 33.1 bits (74), Expect = 0.13 Identities = 40/128 (31%), Positives = 44/128 (34%), Gaps = 26/128 (20%) Query: 31 RSAGPRSTPRWTRLCRDGIPE-AVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPRR 89 RSAGP + G A A RE+R G R E GLR + G E P R Sbjct: 50 RSAGPGARSGRAGAAGQGAQGWAAARRESRAAGGRLECLGLRAGAGRGGGE---EEEPAR 106 Query: 90 CP------------------RPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGSPAL 131 P R C R V G L PR P AR P P P L Sbjct: 107 APPRRGGASRGRVGRHRHRHRHHCQNRLSGVAGCLPLPR----PRDGARSPQPLPWKPGL 162 Query: 132 NRLILHSG 139 L + SG Sbjct: 163 PSLCVASG 170 >gi|239751580 PREDICTED: hypothetical protein [Homo sapiens] Length = 195 Score = 33.1 bits (74), Expect = 0.13 Identities = 40/128 (31%), Positives = 44/128 (34%), Gaps = 26/128 (20%) Query: 31 RSAGPRSTPRWTRLCRDGIPE-AVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPRR 89 RSAGP + G A A RE+R G R E GLR + G E P R Sbjct: 50 RSAGPGARSGRAGAAGQGAQGWAAARRESRAAGGRLECLGLRAGAGRGGGE---EEEPAR 106 Query: 90 CP------------------RPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGSPAL 131 P R C R V G L PR P AR P P P L Sbjct: 107 APPRRGGASRGRVGRHRHRHRHHCQNRLSGVAGCLPLPR----PRDGARSPQPLPWKPGL 162 Query: 132 NRLILHSG 139 L + SG Sbjct: 163 PSLCVASG 170 >gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo sapiens] Length = 195 Score = 33.1 bits (74), Expect = 0.13 Identities = 40/128 (31%), Positives = 44/128 (34%), Gaps = 26/128 (20%) Query: 31 RSAGPRSTPRWTRLCRDGIPE-AVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPRR 89 RSAGP + G A A RE+R G R E GLR + G E P R Sbjct: 50 RSAGPGARSGRAGAAGQGAQGWAAARRESRAAGGRLECLGLRAGAGRGGGE---EEEPAR 106 Query: 90 CP------------------RPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGSPAL 131 P R C R V G L PR P AR P P P L Sbjct: 107 APPRRGGASRGRVGRHRHRHRHHCQNRLSGVAGCLPLPR----PRDGARSPQPLPWKPGL 162 Query: 132 NRLILHSG 139 L + SG Sbjct: 163 PSLCVASG 170 >gi|171543895 ataxin 2 [Homo sapiens] Length = 1313 Score = 33.1 bits (74), Expect = 0.13 Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 9/95 (9%) Query: 51 EAVAPRETRTGGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPR 110 EA P RT G +W + VP L + R PR G T P VL+ P+ Sbjct: 657 EAATPPVARTSP-SGGTWSSVVSGVPRLSP---KTHRPRSPRQNSIGNTPSGP-VLASPQ 711 Query: 111 WRRVPDSRAR----GAAPAPGSPALNRLILHSGDS 141 +P A+P P SPA NR + S ++ Sbjct: 712 AGIIPTEAVAMPIPAASPTPASPASNRAVTPSSEA 746 >gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] Length = 447 Score = 32.7 bits (73), Expect = 0.17 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Query: 52 AVAPRETRTGGLRG--ESWGLRKASVPELGTCWGEARPRRCPRP-----RCPGRTGLVPG 104 A APR+ +G E +G + P G CW + P R P P R P + + G Sbjct: 230 ASAPRQESHNFAKGCAEFYGSGARAQPG-GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAG 288 Query: 105 VLSGPRWRRVPDSRARGAAPAPGS 128 V SG RAR AP S Sbjct: 289 VGSGAPGEPAEPGRARAPRSAPSS 312 Score = 27.7 bits (60), Expect = 5.6 Identities = 31/105 (29%), Positives = 38/105 (36%), Gaps = 18/105 (17%) Query: 29 PGRSAGPRSTP----------RWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVPEL 78 PGR+ PRS P R R G P G RG SW + + Sbjct: 300 PGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARG-SWPSPRCLPSDG 358 Query: 79 GTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRR--VPDSRARG 121 G EA P P PR P + P L+ RR VP + +G Sbjct: 359 GA--REAPPTSAPHPRRPAGS---PPALADREGRRSLVPQTSIQG 398 >gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo sapiens] Length = 304 Score = 32.7 bits (73), Expect = 0.17 Identities = 34/107 (31%), Positives = 38/107 (35%), Gaps = 11/107 (10%) Query: 27 LGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRTGGL--RGESWGLRKASVPELGTCWGE 84 LG G +AG +R R P A PR GG G + P G+ Sbjct: 61 LGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRG 120 Query: 85 ARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGSPAL 131 AR R C P C S W R P R R A P SPAL Sbjct: 121 ARSRGCHSPSCCRS--------SSCAWHRWPQLRGREAEPR-ASPAL 158 >gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo sapiens] Length = 304 Score = 32.7 bits (73), Expect = 0.17 Identities = 34/107 (31%), Positives = 38/107 (35%), Gaps = 11/107 (10%) Query: 27 LGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRTGGL--RGESWGLRKASVPELGTCWGE 84 LG G +AG +R R P A PR GG G + P G+ Sbjct: 61 LGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRG 120 Query: 85 ARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGSPAL 131 AR R C P C S W R P R R A P SPAL Sbjct: 121 ARSRGCHSPSCCRS--------SSCAWHRWPQLRGREAEPR-ASPAL 158 >gi|13376335 hypothetical protein LOC79946 [Homo sapiens] Length = 257 Score = 32.7 bits (73), Expect = 0.17 Identities = 33/105 (31%), Positives = 38/105 (36%), Gaps = 24/105 (22%) Query: 29 PGRSAGPRS-----TPRWTRLCRDGIPEAVAPRETRTGGLRGESWGLRKASVPELGTCWG 83 P R++G R P W LC P+ T G +R + P T Sbjct: 55 PNRASGRRRRSCSPAPTWPPLC-------CYPQSRPTASAAGPGACMRASGRPHGNTTAS 107 Query: 84 EARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGS 128 A PR PRPR PG GP R P A G AP P S Sbjct: 108 TAPPRH-PRPRRPG----------GPALRPTPRPCA-GPAPPPAS 140 >gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] Length = 316 Score = 32.3 bits (72), Expect = 0.23 Identities = 34/107 (31%), Positives = 38/107 (35%), Gaps = 11/107 (10%) Query: 27 LGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRTGGL--RGESWGLRKASVPELGTCWGE 84 LG G +AG +R R P A PR GG G + P G+ Sbjct: 61 LGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRG 120 Query: 85 ARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAPAPGSPAL 131 AR R C P C S W R P R R A P SPAL Sbjct: 121 ARSRGCHSPSCCRS--------SSCAWHRWPQLRGREADPR-ASPAL 158 >gi|239754514 PREDICTED: hypothetical protein [Homo sapiens] Length = 260 Score = 32.3 bits (72), Expect = 0.23 Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 64 RGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAA 123 R S L+ P+ + G AR R P PRCP R GL+ GP P RA Sbjct: 12 RSTSPRLQPPPSPDSSSRGGSARRRAAPAPRCPQRLGLLRP--PGPTNSEFP--RAWHPR 67 Query: 124 PAPG 127 P PG Sbjct: 68 PPPG 71 >gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] Length = 274 Score = 32.3 bits (72), Expect = 0.23 Identities = 41/134 (30%), Positives = 48/134 (35%), Gaps = 12/134 (8%) Query: 5 EGGVGPWGREWERERFCGLLGLLGPGRSAGPRSTPRWTRLCRDGIPEAVAPRETRTGGLR 64 +GG GP G + + L PG SA + R L G PR+ Sbjct: 49 DGGWGPPGGAGDHQTL--QRASLLPGGSAD-KDQEREPSLAARGTAPPAPPRQCLPTPCP 105 Query: 65 GESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPGVLSGPRWRRVPDSRARGAAP 124 GLR P GT P RCPR PG GL P P R P +A Sbjct: 106 PLGHGLRPRPPP--GT-----PPPRCPRTLAPGPRGLFPAPPPAPA-RTGPAGKAAADRG 157 Query: 125 APGSPALNRLILHS 138 PG PA R + S Sbjct: 158 RPG-PAAGRRVRRS 170 >gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo sapiens] Length = 1424 Score = 32.3 bits (72), Expect = 0.23 Identities = 44/154 (28%), Positives = 55/154 (35%), Gaps = 30/154 (19%) Query: 20 FCGLLGLLGPGRSAGPRSTPRWT----------RLCRDGIPEAVAPRETRTG-------- 61 F G+ GLLGP GP P + RDGIP A + TG Sbjct: 1123 FKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIP-GPAGEKGETGLLRAPPGP 1181 Query: 62 -------GLRGESWGLRKASVPELGTCWGEARPR-RCPRPRCPGRTGLVPGVLSGPRWRR 113 G +G+ +P G+A PR PG GL ++ G R Sbjct: 1182 RGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNR 1241 Query: 114 -VPDSRARGAAPAPGSPALNRLILHSGD--SNGH 144 P SR AP P P + +I GD S GH Sbjct: 1242 GPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGH 1275 >gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo sapiens] Length = 1494 Score = 32.3 bits (72), Expect = 0.23 Identities = 44/154 (28%), Positives = 55/154 (35%), Gaps = 30/154 (19%) Query: 20 FCGLLGLLGPGRSAGPRSTPRWT----------RLCRDGIPEAVAPRETRTG-------- 61 F G+ GLLGP GP P + RDGIP A + TG Sbjct: 1123 FKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIP-GPAGEKGETGLLRAPPGP 1181 Query: 62 -------GLRGESWGLRKASVPELGTCWGEARPR-RCPRPRCPGRTGLVPGVLSGPRWRR 113 G +G+ +P G+A PR PG GL ++ G R Sbjct: 1182 RGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNR 1241 Query: 114 -VPDSRARGAAPAPGSPALNRLILHSGD--SNGH 144 P SR AP P P + +I GD S GH Sbjct: 1242 GPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGH 1275 >gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo sapiens] Length = 1637 Score = 32.3 bits (72), Expect = 0.23 Identities = 44/154 (28%), Positives = 55/154 (35%), Gaps = 30/154 (19%) Query: 20 FCGLLGLLGPGRSAGPRSTPRWT----------RLCRDGIPEAVAPRETRTG-------- 61 F G+ GLLGP GP P + RDGIP A + TG Sbjct: 1123 FKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIP-GPAGEKGETGLLRAPPGP 1181 Query: 62 -------GLRGESWGLRKASVPELGTCWGEARPR-RCPRPRCPGRTGLVPGVLSGPRWRR 113 G +G+ +P G+A PR PG GL ++ G R Sbjct: 1182 RGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNR 1241 Query: 114 -VPDSRARGAAPAPGSPALNRLILHSGD--SNGH 144 P SR AP P P + +I GD S GH Sbjct: 1242 GPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGH 1275 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.140 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,892,033 Number of Sequences: 37866 Number of extensions: 582103 Number of successful extensions: 2180 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 171 Number of HSP's that attempted gapping in prelim test: 2095 Number of HSP's gapped (non-prelim): 243 length of query: 181 length of database: 18,247,518 effective HSP length: 96 effective length of query: 85 effective length of database: 14,612,382 effective search space: 1242052470 effective search space used: 1242052470 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.