Guide to the Human Genome
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Name: LOC202781 Sequence: fasta or formatted (181aa) NCBI GI: 239509115
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {181aa} PREDICTED: hypothetical protein
alt mRNA {181aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         15           2
 C cysteine            2.8          5           1
 D aspartate           2.8          5           1
 E glutamate           6.1         11           1
 F phenylalanine       1.7          3           1
 G glycine            13.8         25           2
 H histidine           1.7          3           1
 I isoleucine          1.7          3           1
 K lysine              1.1          2           1
 L leucine             7.7         14           2
 M methionine          0.6          1           1
 N asparagine          2.2          4           1
 P proline            12.7         23           2
 Q glutamine           1.1          2           1
 R arginine           16.6         30           2
 S serine              6.6         12           2
 T threonine           4.4          8           1
 V valine              3.9          7           1
 W tryptophan          3.9          7           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC202781             1.000   PREDICTED: hypothetical protein 
LOC202781             1.000   PREDICTED: hypothetical protein 
COL18A1               0.038   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
LOC100129463          0.033   PREDICTED: hypothetical protein 
LOC100129463          0.033   PREDICTED: hypothetical protein 
LOC100129463          0.033   PREDICTED: hypothetical protein 
LOC728317             0.027   PREDICTED: hypothetical protein 
LOC728317             0.027   PREDICTED: hypothetical protein 
LOC728307             0.027   PREDICTED: hypothetical protein 
SOLH                  0.027   small optic lobes 
APC2                  0.027   adenomatosis polyposis coli 2 
MESP1                 0.024   mesoderm posterior 1 
LOC100130360          0.024   PREDICTED: hypothetical protein 
COL5A3                0.024   collagen, type V, alpha 3 preproprotein 
LOC728317             0.022   PREDICTED: hypothetical protein 
LOC100293935          0.022   PREDICTED: hypothetical protein 
LOC100287289          0.022   PREDICTED: hypothetical protein 
LOC100287289          0.022   PREDICTED: hypothetical protein XP_002343656 
ATXN2                 0.022   ataxin 2 
LOC100127930          0.022   PREDICTED: hypothetical protein 
LOC100290812          0.022   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.022   PREDICTED: hypothetical protein XP_002343496 
C10orf95              0.022   hypothetical protein LOC79946 
LOC100293975          0.019   PREDICTED: hypothetical protein 
LOC100128081          0.019   PREDICTED: hypothetical protein 
LOC646509             0.019   PREDICTED: hypothetical protein 
COL4A3                0.019   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.019   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.019   alpha 3 type IV collagen isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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