Guide to the Human Genome
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Name: LOC100288446 Sequence: fasta or formatted (521aa) NCBI GI: 239746383
Description:

PREDICTED: hypothetical protein XP_002343740

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         47           2
 C cysteine            2.9         15           1
 D aspartate           1.2          6           1
 E glutamate           4.2         22           2
 F phenylalanine       7.3         38           2
 G glycine             6.5         34           3
 H histidine           3.1         16           1
 I isoleucine          4.4         23           2
 K lysine              5.2         27           2
 L leucine             8.4         44           1
 M methionine          2.3         12           1
 N asparagine          3.8         20           1
 P proline             6.3         33           2
 Q glutamine           1.7          9           1
 R arginine            5.8         30           2
 S serine              9.4         49           2
 T threonine           7.7         40           2
 V valine              9.4         49           2
 W tryptophan          0.6          3           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343740 
LOC100290090          0.997   PREDICTED: hypothetical protein XP_002348037 
LOC100291846          0.653   PREDICTED: hypothetical protein XP_002345270 
LOC100130710          0.204   PREDICTED: hypothetical protein 
LOC100130710          0.204   PREDICTED: hypothetical protein 
LOC100129081          0.165   PREDICTED: hypothetical protein 
LOC100129081          0.165   PREDICTED: hypothetical protein 
LOC100129081          0.165   PREDICTED: hypothetical protein 
LOC100291794          0.164   PREDICTED: hypothetical protein XP_002345269 
LOC100290152          0.164   PREDICTED: hypothetical protein XP_002348038 
LOC100288507          0.164   PREDICTED: hypothetical protein XP_002343741 
LOC100130710          0.123   PREDICTED: hypothetical protein 
LOC100294029          0.117   PREDICTED: hypothetical protein 
LOC100290322          0.060   PREDICTED: hypothetical protein XP_002348039 
LOC100288722          0.060   PREDICTED: hypothetical protein XP_002343742 
LOC100291582          0.058   PREDICTED: hypothetical protein XP_002345268 
LOC100130667          0.052   PREDICTED: hypothetical protein 
LOC100130667          0.052   PREDICTED: hypothetical protein 
LOC100130667          0.052   PREDICTED: hypothetical protein 
LOC100130262          0.014   PREDICTED: hypothetical protein 
LOC100130262          0.014   PREDICTED: hypothetical protein 
LOC100130262          0.014   PREDICTED: hypothetical protein 
NOD1                  0.010   nucleotide-binding oligomerization domain containing ...
SCHIP1                0.008   schwannomin interacting protein 1 
MUC16                 0.007   mucin 16 
LOC100293166          0.007   PREDICTED: similar to ribosomal protein L36a 
LOC100290185          0.007   PREDICTED: hypothetical protein XP_002346982 
LOC100288541          0.007   PREDICTED: hypothetical protein XP_002342844 
LOC100288541          0.007   PREDICTED: similar to ribosomal protein L36a 
GPATCH3               0.007   G patch domain containing 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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