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Search of human proteins with 239508986
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508986 PREDICTED: hypothetical protein [Homo sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754662 PREDICTED: hypothetical protein [Homo sapiens] 410 e-115
gi|239749226 PREDICTED: hypothetical protein [Homo sapiens] 410 e-115
gi|239743303 PREDICTED: hypothetical protein [Homo sapiens] 410 e-115
gi|239508986 PREDICTED: hypothetical protein [Homo sapiens] 410 e-115
gi|169166217 PREDICTED: hypothetical protein [Homo sapiens] 33 0.20
gi|4885127 caudal type homeobox 4 [Homo sapiens] 33 0.20
gi|24797116 calcium-binding tyrosine phosphorylation-regulated p... 32 0.26
gi|24797112 calcium-binding tyrosine phosphorylation-regulated p... 32 0.26
gi|24797110 calcium-binding tyrosine phosphorylation-regulated p... 32 0.26
gi|19224660 protein kinase C and casein kinase substrate in neur... 30 1.3
gi|13375727 acyl-CoA synthetase short-chain family member 3 [Hom... 30 1.3
gi|194018535 Gen homolog 1, endonuclease [Homo sapiens] 29 2.2
gi|194018531 Gen homolog 1, endonuclease [Homo sapiens] 29 2.2
gi|157738619 smoothelin-like 1 [Homo sapiens] 29 2.2
gi|50345997 E1A binding protein p300 [Homo sapiens] 29 2.9
gi|114520609 neural precursor cell expressed, developmentally do... 29 2.9
gi|114520607 neural precursor cell expressed, developmentally do... 29 2.9
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 29 2.9
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 29 2.9
gi|166235163 nuclear fragile X mental retardation protein intera... 28 3.8
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap... 28 3.8
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 28 3.8
gi|73760403 Kruppel-like factor 10 isoform b [Homo sapiens] 27 8.4
gi|5032177 Kruppel-like factor 10 isoform a [Homo sapiens] 27 8.4
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 27 8.4
gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo ... 27 8.4
gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo ... 27 8.4
gi|26667243 eyes absent 3 [Homo sapiens] 27 8.4
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 27 8.4
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 27 8.4
>gi|239754662 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 410 bits (1054), Expect = e-115
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA
Sbjct: 1 MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
Query: 61 RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV
Sbjct: 61 RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
Query: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC
Sbjct: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
Query: 181 PPLPGARMVSARQCL 195
PPLPGARMVSARQCL
Sbjct: 181 PPLPGARMVSARQCL 195
>gi|239749226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 410 bits (1054), Expect = e-115
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA
Sbjct: 1 MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
Query: 61 RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV
Sbjct: 61 RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
Query: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC
Sbjct: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
Query: 181 PPLPGARMVSARQCL 195
PPLPGARMVSARQCL
Sbjct: 181 PPLPGARMVSARQCL 195
>gi|239743303 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 410 bits (1054), Expect = e-115
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA
Sbjct: 1 MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
Query: 61 RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV
Sbjct: 61 RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
Query: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC
Sbjct: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
Query: 181 PPLPGARMVSARQCL 195
PPLPGARMVSARQCL
Sbjct: 181 PPLPGARMVSARQCL 195
>gi|239508986 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 410 bits (1054), Expect = e-115
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA
Sbjct: 1 MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
Query: 61 RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV
Sbjct: 61 RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
Query: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC
Sbjct: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
Query: 181 PPLPGARMVSARQCL 195
PPLPGARMVSARQCL
Sbjct: 181 PPLPGARMVSARQCL 195
>gi|169166217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 32.7 bits (73), Expect = 0.20
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 88 VVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVHMSQQN 147
V W A W +P A P V AS+PSP L + +S +
Sbjct: 21 VAAARSWGRPAPWLAPRASEALWYCFST-PAGVRPSEEQDSASRPSPFVLLQSGRLSTKR 79
Query: 148 ARVFCSLLNKRSLPRNQPQTHHCSNMW---QGEALCPPLPGARMVSA 191
SLL PR P+ + +W G A PP PG R SA
Sbjct: 80 PERQASLL-----PRPAPRGSTGAQVWWAGPGAAAAPPPPGVRQCSA 121
>gi|4885127 caudal type homeobox 4 [Homo sapiens]
Length = 284
Score = 32.7 bits (73), Expect = 0.20
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 93 HWSEWATWTSPTAEAISSLSLGPGPRN-VSSVPVGMVASQPSPEC 136
HW W SP + S+ PGP + + +VPV V S P+ C
Sbjct: 65 HWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFC 109
>gi|24797116 calcium-binding tyrosine phosphorylation-regulated
protein isoform c [Homo sapiens]
Length = 379
Score = 32.3 bits (72), Expect = 0.26
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 16/113 (14%)
Query: 83 QTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVH 142
+T Y T S +A + EA+ LS P ++ P + SPE +
Sbjct: 112 RTEYSDKTTQFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPAD 171
Query: 143 MSQQNARVFCSLLNKRSLPRNQPQTHHCSNMW----------QGEALCPPLPG 185
+Q A++ ++R P CSNMW QG PP PG
Sbjct: 172 PAQLAAQMLAMATSERGQP------PPCSNMWTLYCLTDKNQQGHPSPPPAPG 218
>gi|24797112 calcium-binding tyrosine phosphorylation-regulated
protein isoform c [Homo sapiens]
Length = 379
Score = 32.3 bits (72), Expect = 0.26
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 16/113 (14%)
Query: 83 QTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVH 142
+T Y T S +A + EA+ LS P ++ P + SPE +
Sbjct: 112 RTEYSDKTTQFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPAD 171
Query: 143 MSQQNARVFCSLLNKRSLPRNQPQTHHCSNMW----------QGEALCPPLPG 185
+Q A++ ++R P CSNMW QG PP PG
Sbjct: 172 PAQLAAQMLAMATSERGQP------PPCSNMWTLYCLTDKNQQGHPSPPPAPG 218
>gi|24797110 calcium-binding tyrosine phosphorylation-regulated
protein isoform d [Homo sapiens]
Length = 281
Score = 32.3 bits (72), Expect = 0.26
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 16/113 (14%)
Query: 83 QTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVH 142
+T Y T S +A + EA+ LS P ++ P + SPE +
Sbjct: 14 RTEYSDKTTQFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPAD 73
Query: 143 MSQQNARVFCSLLNKRSLPRNQPQTHHCSNMW----------QGEALCPPLPG 185
+Q A++ ++R P CSNMW QG PP PG
Sbjct: 74 PAQLAAQMLAMATSERGQP------PPCSNMWTLYCLTDKNQQGHPSPPPAPG 120
>gi|19224660 protein kinase C and casein kinase substrate in neurons
3 [Homo sapiens]
Length = 424
Score = 30.0 bits (66), Expect = 1.3
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 67 HPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLG---PGPRNVSSV 123
H G+ + +L+W ++ +G +W ++ W+ T IS G P ++S+
Sbjct: 269 HQGIEAASDEEDLRWWRSTHGPGMAMNWPQFEEWSLDTQRTISRKEKGGRSPDEVTLTSI 328
Query: 124 PVGMVASQPSPE 135
+ P P+
Sbjct: 329 VPTRDGTAPPPQ 340
>gi|13375727 acyl-CoA synthetase short-chain family member 3 [Homo
sapiens]
Length = 686
Score = 30.0 bits (66), Expect = 1.3
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 79 LQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVA-SQPSPECL 137
L+W + ++ V HW W + T I++ +G G N + P G S P +
Sbjct: 433 LEWSKNVFRVPVLDHW-----WQTETGSPITASCVGLG--NSKTPPPGQAGKSVPGYNVM 485
Query: 138 RLTVHMSQQNARVFCSLLNKRSLP 161
L +M + AR +++ K LP
Sbjct: 486 ILDDNMQKLKARCLGNIVVKLPLP 509
>gi|194018535 Gen homolog 1, endonuclease [Homo sapiens]
Length = 908
Score = 29.3 bits (64), Expect = 2.2
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 46 TPCALVTQPLV-KSLARASLCTHPGLPRTRE 75
T C Q LV K LA S+C+HPG P+ E
Sbjct: 244 TSCNSSPQLLVTKKLAHCSVCSHPGSPKDHE 274
>gi|194018531 Gen homolog 1, endonuclease [Homo sapiens]
Length = 908
Score = 29.3 bits (64), Expect = 2.2
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 46 TPCALVTQPLV-KSLARASLCTHPGLPRTRE 75
T C Q LV K LA S+C+HPG P+ E
Sbjct: 244 TSCNSSPQLLVTKKLAHCSVCSHPGSPKDHE 274
>gi|157738619 smoothelin-like 1 [Homo sapiens]
Length = 512
Score = 29.3 bits (64), Expect = 2.2
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 68 PGLPRTREHRELQWE-QTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVG 126
PG P + ++++ E + GV+P+S EW SPT E + + G GP V+S
Sbjct: 264 PGSPSEEQEQDVEKEPEGGAGVIPSSP-EEWPE--SPTGEGHNLSTDGLGPDCVASGQTS 320
Query: 127 MVASQPSP 134
AS+ SP
Sbjct: 321 PSASESSP 328
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 28.9 bits (63), Expect = 2.9
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 103 PTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVHMSQQ-----------NARVF 151
P A + +S+ PGP N+ GM ++ P P+ + + Q N
Sbjct: 659 PNAAGMVPVSMNPGP-NMGQPQPGMTSNGPLPDPSMIRGSVPNQMMPRITPQSGLNQFGQ 717
Query: 152 CSLLNKRSLPRNQPQTHHCSNMWQGEALCPPLP-GARM 188
S+ +PR P H + Q AL PP+ G RM
Sbjct: 718 MSMAQPPIVPRQTPPLQHHGQLAQPGALNPPMGYGPRM 755
>gi|114520609 neural precursor cell expressed, developmentally
down-regulated 4 isoform 1 [Homo sapiens]
Length = 900
Score = 28.9 bits (63), Expect = 2.9
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 64 LCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEA------ISSLSLGPGP 117
L T GLP E ++ + ++ Y H S TWT PT +A ++S GP
Sbjct: 344 LPTSSGLPPGWEEKQDERGRSYY----VDHNSRTTTWTKPTVQATVETSQLTSSQSSAGP 399
Query: 118 RN-VSSVPVGMVASQPS 133
++ S+ G +QPS
Sbjct: 400 QSQASTSDSGQQVTQPS 416
>gi|114520607 neural precursor cell expressed, developmentally
down-regulated 4 isoform 2 [Homo sapiens]
Length = 1247
Score = 28.9 bits (63), Expect = 2.9
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 64 LCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEA------ISSLSLGPGP 117
L T GLP E ++ + ++ Y H S TWT PT +A ++S GP
Sbjct: 691 LPTSSGLPPGWEEKQDERGRSYY----VDHNSRTTTWTKPTVQATVETSQLTSSQSSAGP 746
Query: 118 RN-VSSVPVGMVASQPS 133
++ S+ G +QPS
Sbjct: 747 QSQASTSDSGQQVTQPS 763
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 28.9 bits (63), Expect = 2.9
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 71 PRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAI 108
P T ++L W Q L V H S WA+ +SP AEA+
Sbjct: 559 PPTLRMKKLNW-QKLPSNVAREHNSMWASLSSPDAEAV 595
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 28.9 bits (63), Expect = 2.9
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 71 PRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAI 108
P T ++L W Q L V H S WA+ +SP AEA+
Sbjct: 559 PPTLRMKKLNW-QKLPSNVAREHNSMWASLSSPDAEAV 595
>gi|166235163 nuclear fragile X mental retardation protein
interacting protein 1 [Homo sapiens]
Length = 495
Score = 28.5 bits (62), Expect = 3.8
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 90 PTSHWSEWATWTSPTAEAISSL-SLGPGPRNVSSVPVGMVASQPSPECLRLTVHMSQQNA 148
P W WA P SSL + G P + S P+ + +P + Q
Sbjct: 33 PRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPP 92
Query: 149 RVFCSLLNKRSLPRNQPQTHHCSNMW 174
S L+ + P QP H S W
Sbjct: 93 FDAQSPLDSQPQPSGQPWNFHASTSW 118
>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
sapiens]
Length = 886
Score = 28.5 bits (62), Expect = 3.8
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 61 RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISS--LSLGPGPR 118
+A L H PR++E LQ +Q + G++P + TS + +I+S + P P
Sbjct: 511 QAKLKPHSLEPRSQEQPLLQPKQDMLGILPAG-----SPLTSSISSSITSSLAATPPSPV 565
Query: 119 NVSSVPVGMVAS 130
SSVP GM A+
Sbjct: 566 GTSSVP-GMNAN 576
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 28.5 bits (62), Expect = 3.8
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 95 SEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVHMSQQNARVFCSL 154
S +T ++ T++ + + P SS+P SQ S C+ + QQN +V+ S
Sbjct: 2324 SSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLS--CMPSLIAQQQQNPQVYVSQ 2381
Query: 155 LNKRSLPRNQPQTHHCSNMWQGEALCPP 182
+P T H N Q L PP
Sbjct: 2382 SAAAQIPAFYMDTSHLFNT-QHARLAPP 2408
>gi|73760403 Kruppel-like factor 10 isoform b [Homo sapiens]
Length = 469
Score = 27.3 bits (59), Expect = 8.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 32 SLSGDRLFPHS---AFHTPCALVTQPLVKSLARASLCTHPGLPRT 73
S +G RL P + F A VT + S R+ +C+HPG +T
Sbjct: 324 SPNGTRLSPIAPAPGFSPSAAKVTPQIDSSRIRSHICSHPGCGKT 368
>gi|5032177 Kruppel-like factor 10 isoform a [Homo sapiens]
Length = 480
Score = 27.3 bits (59), Expect = 8.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 32 SLSGDRLFPHS---AFHTPCALVTQPLVKSLARASLCTHPGLPRT 73
S +G RL P + F A VT + S R+ +C+HPG +T
Sbjct: 335 SPNGTRLSPIAPAPGFSPSAAKVTPQIDSSRIRSHICSHPGCGKT 379
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 27.3 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 146 QNARVFCSLLNKRSLPRNQPQTHHCSNMW 174
+ AR+FC L K P ++ T +NMW
Sbjct: 2008 ERARLFCYSLLKEDFPESEKLTLFIANMW 2036
>gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo
sapiens]
Length = 375
Score = 27.3 bits (59), Expect = 8.4
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 153 SLLNKRSLPRNQPQTHHCSNMWQGEALCPP 182
SLL R PR P HHC + G L PP
Sbjct: 261 SLLGSRG-PRVHPGPHHCHHQGPGPGLEPP 289
>gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo
sapiens]
Length = 485
Score = 27.3 bits (59), Expect = 8.4
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 91 TSHWSEW-ATW--TSPTAEAISSLSLGP 115
T HWS+W W PT ISS S GP
Sbjct: 192 TGHWSQWTGLWYHEPPTGSLISSSSPGP 219
>gi|26667243 eyes absent 3 [Homo sapiens]
Length = 573
Score = 27.3 bits (59), Expect = 8.4
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 9/119 (7%)
Query: 47 PCALVTQPLVKSLARASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAE 106
P A + V A + L +T+ + YG+ P A W E
Sbjct: 76 PYAHILSVPVSETAYPGQTQYQTLQQTQPYAVYPQATQTYGLPPFG-----ALWPGMKPE 130
Query: 107 AISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQP 165
+ + P +V + G+ SQPSP + S NA SL++ S N P
Sbjct: 131 SGLIQTPSPSQHSVLTCTTGLTTSQPSPAHYSYPIQASSTNA----SLISTSSTIANIP 185
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 27.3 bits (59), Expect = 8.4
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 90 PTSHWSEWATWTSPTAEAISSLSLGPGPRNV--SSVPVGMVASQPSPECLRLTVHMSQQN 147
P +H+ + L+ G P+ + SS P A QP+P+ L TVH S +
Sbjct: 804 PMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPH 863
Query: 148 --ARVFCSLLNKRSLPR-NQPQTHHCS 171
++ + P +QPQ+ H +
Sbjct: 864 HATQLHAHQPQPATTPTGSQPQSQHAA 890
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 27.3 bits (59), Expect = 8.4
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 90 PTSHWSEWATWTSPTAEAISSLSLGPGPRNV--SSVPVGMVASQPSPECLRLTVHMSQQN 147
P +H+ + L+ G P+ + SS P A QP+P+ L TVH S +
Sbjct: 804 PMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPH 863
Query: 148 --ARVFCSLLNKRSLPR-NQPQTHHCS 171
++ + P +QPQ+ H +
Sbjct: 864 HATQLHAHQPQPATTPTGSQPQSQHAA 890
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.129 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,453,424
Number of Sequences: 37866
Number of extensions: 443139
Number of successful extensions: 1370
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1362
Number of HSP's gapped (non-prelim): 33
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.