Guide to the Human Genome
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Search of human proteins with 239508986

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239508986 PREDICTED: hypothetical protein [Homo sapiens]
         (195 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754662 PREDICTED: hypothetical protein [Homo sapiens]           410   e-115
gi|239749226 PREDICTED: hypothetical protein [Homo sapiens]           410   e-115
gi|239743303 PREDICTED: hypothetical protein [Homo sapiens]           410   e-115
gi|239508986 PREDICTED: hypothetical protein [Homo sapiens]           410   e-115
gi|169166217 PREDICTED: hypothetical protein [Homo sapiens]            33   0.20 
gi|4885127 caudal type homeobox 4 [Homo sapiens]                       33   0.20 
gi|24797116 calcium-binding tyrosine phosphorylation-regulated p...    32   0.26 
gi|24797112 calcium-binding tyrosine phosphorylation-regulated p...    32   0.26 
gi|24797110 calcium-binding tyrosine phosphorylation-regulated p...    32   0.26 
gi|19224660 protein kinase C and casein kinase substrate in neur...    30   1.3  
gi|13375727 acyl-CoA synthetase short-chain family member 3 [Hom...    30   1.3  
gi|194018535 Gen homolog 1, endonuclease [Homo sapiens]                29   2.2  
gi|194018531 Gen homolog 1, endonuclease [Homo sapiens]                29   2.2  
gi|157738619 smoothelin-like 1 [Homo sapiens]                          29   2.2  
gi|50345997 E1A binding protein p300 [Homo sapiens]                    29   2.9  
gi|114520609 neural precursor cell expressed, developmentally do...    29   2.9  
gi|114520607 neural precursor cell expressed, developmentally do...    29   2.9  
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]                29   2.9  
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]                29   2.9  
gi|166235163 nuclear fragile X mental retardation protein intera...    28   3.8  
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap...    28   3.8  
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]             28   3.8  
gi|73760403 Kruppel-like factor 10 isoform b [Homo sapiens]            27   8.4  
gi|5032177 Kruppel-like factor 10 isoform a [Homo sapiens]             27   8.4  
gi|149363685 hypothetical protein LOC23379 [Homo sapiens]              27   8.4  
gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo ...    27   8.4  
gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo ...    27   8.4  
gi|26667243 eyes absent 3 [Homo sapiens]                               27   8.4  
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]          27   8.4  
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]          27   8.4  

>gi|239754662 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score =  410 bits (1054), Expect = e-115
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
           MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA
Sbjct: 1   MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60

Query: 61  RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
           RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV
Sbjct: 61  RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120

Query: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
           SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC
Sbjct: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180

Query: 181 PPLPGARMVSARQCL 195
           PPLPGARMVSARQCL
Sbjct: 181 PPLPGARMVSARQCL 195


>gi|239749226 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score =  410 bits (1054), Expect = e-115
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
           MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA
Sbjct: 1   MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60

Query: 61  RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
           RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV
Sbjct: 61  RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120

Query: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
           SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC
Sbjct: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180

Query: 181 PPLPGARMVSARQCL 195
           PPLPGARMVSARQCL
Sbjct: 181 PPLPGARMVSARQCL 195


>gi|239743303 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score =  410 bits (1054), Expect = e-115
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
           MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA
Sbjct: 1   MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60

Query: 61  RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
           RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV
Sbjct: 61  RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120

Query: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
           SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC
Sbjct: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180

Query: 181 PPLPGARMVSARQCL 195
           PPLPGARMVSARQCL
Sbjct: 181 PPLPGARMVSARQCL 195


>gi|239508986 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score =  410 bits (1054), Expect = e-115
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60
           MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA
Sbjct: 1   MKSQLLVREPPSGWESLAFCSGSAQLGVSACSLSGDRLFPHSAFHTPCALVTQPLVKSLA 60

Query: 61  RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120
           RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV
Sbjct: 61  RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNV 120

Query: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180
           SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC
Sbjct: 121 SSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQPQTHHCSNMWQGEALC 180

Query: 181 PPLPGARMVSARQCL 195
           PPLPGARMVSARQCL
Sbjct: 181 PPLPGARMVSARQCL 195


>gi|169166217 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 174

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 88  VVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVHMSQQN 147
           V     W   A W +P A           P  V        AS+PSP  L  +  +S + 
Sbjct: 21  VAAARSWGRPAPWLAPRASEALWYCFST-PAGVRPSEEQDSASRPSPFVLLQSGRLSTKR 79

Query: 148 ARVFCSLLNKRSLPRNQPQTHHCSNMW---QGEALCPPLPGARMVSA 191
                SLL     PR  P+    + +W    G A  PP PG R  SA
Sbjct: 80  PERQASLL-----PRPAPRGSTGAQVWWAGPGAAAAPPPPGVRQCSA 121


>gi|4885127 caudal type homeobox 4 [Homo sapiens]
          Length = 284

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 93  HWSEWATWTSPTAEAISSLSLGPGPRN-VSSVPVGMVASQPSPEC 136
           HW     W SP +      S+ PGP + + +VPV  V S P+  C
Sbjct: 65  HWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFC 109


>gi|24797116 calcium-binding tyrosine phosphorylation-regulated
           protein isoform c [Homo sapiens]
          Length = 379

 Score = 32.3 bits (72), Expect = 0.26
 Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 83  QTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVH 142
           +T Y    T   S +A   +   EA+  LS  P     ++ P     +  SPE   +   
Sbjct: 112 RTEYSDKTTQFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPAD 171

Query: 143 MSQQNARVFCSLLNKRSLPRNQPQTHHCSNMW----------QGEALCPPLPG 185
            +Q  A++     ++R  P        CSNMW          QG    PP PG
Sbjct: 172 PAQLAAQMLAMATSERGQP------PPCSNMWTLYCLTDKNQQGHPSPPPAPG 218


>gi|24797112 calcium-binding tyrosine phosphorylation-regulated
           protein isoform c [Homo sapiens]
          Length = 379

 Score = 32.3 bits (72), Expect = 0.26
 Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 83  QTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVH 142
           +T Y    T   S +A   +   EA+  LS  P     ++ P     +  SPE   +   
Sbjct: 112 RTEYSDKTTQFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPAD 171

Query: 143 MSQQNARVFCSLLNKRSLPRNQPQTHHCSNMW----------QGEALCPPLPG 185
            +Q  A++     ++R  P        CSNMW          QG    PP PG
Sbjct: 172 PAQLAAQMLAMATSERGQP------PPCSNMWTLYCLTDKNQQGHPSPPPAPG 218


>gi|24797110 calcium-binding tyrosine phosphorylation-regulated
           protein isoform d [Homo sapiens]
          Length = 281

 Score = 32.3 bits (72), Expect = 0.26
 Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 83  QTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVH 142
           +T Y    T   S +A   +   EA+  LS  P     ++ P     +  SPE   +   
Sbjct: 14  RTEYSDKTTQFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPAD 73

Query: 143 MSQQNARVFCSLLNKRSLPRNQPQTHHCSNMW----------QGEALCPPLPG 185
            +Q  A++     ++R  P        CSNMW          QG    PP PG
Sbjct: 74  PAQLAAQMLAMATSERGQP------PPCSNMWTLYCLTDKNQQGHPSPPPAPG 120


>gi|19224660 protein kinase C and casein kinase substrate in neurons
           3 [Homo sapiens]
          Length = 424

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 67  HPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLG---PGPRNVSSV 123
           H G+    +  +L+W ++ +G     +W ++  W+  T   IS    G   P    ++S+
Sbjct: 269 HQGIEAASDEEDLRWWRSTHGPGMAMNWPQFEEWSLDTQRTISRKEKGGRSPDEVTLTSI 328

Query: 124 PVGMVASQPSPE 135
                 + P P+
Sbjct: 329 VPTRDGTAPPPQ 340


>gi|13375727 acyl-CoA synthetase short-chain family member 3 [Homo
           sapiens]
          Length = 686

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 79  LQWEQTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVA-SQPSPECL 137
           L+W + ++ V    HW     W + T   I++  +G G  N  + P G    S P    +
Sbjct: 433 LEWSKNVFRVPVLDHW-----WQTETGSPITASCVGLG--NSKTPPPGQAGKSVPGYNVM 485

Query: 138 RLTVHMSQQNARVFCSLLNKRSLP 161
            L  +M +  AR   +++ K  LP
Sbjct: 486 ILDDNMQKLKARCLGNIVVKLPLP 509


>gi|194018535 Gen homolog 1, endonuclease [Homo sapiens]
          Length = 908

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 46  TPCALVTQPLV-KSLARASLCTHPGLPRTRE 75
           T C    Q LV K LA  S+C+HPG P+  E
Sbjct: 244 TSCNSSPQLLVTKKLAHCSVCSHPGSPKDHE 274


>gi|194018531 Gen homolog 1, endonuclease [Homo sapiens]
          Length = 908

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 46  TPCALVTQPLV-KSLARASLCTHPGLPRTRE 75
           T C    Q LV K LA  S+C+HPG P+  E
Sbjct: 244 TSCNSSPQLLVTKKLAHCSVCSHPGSPKDHE 274


>gi|157738619 smoothelin-like 1 [Homo sapiens]
          Length = 512

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 68  PGLPRTREHRELQWE-QTLYGVVPTSHWSEWATWTSPTAEAISSLSLGPGPRNVSSVPVG 126
           PG P   + ++++ E +   GV+P+S   EW    SPT E  +  + G GP  V+S    
Sbjct: 264 PGSPSEEQEQDVEKEPEGGAGVIPSSP-EEWPE--SPTGEGHNLSTDGLGPDCVASGQTS 320

Query: 127 MVASQPSP 134
             AS+ SP
Sbjct: 321 PSASESSP 328


>gi|50345997 E1A binding protein p300 [Homo sapiens]
          Length = 2414

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 13/98 (13%)

Query: 103 PTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVHMSQQ-----------NARVF 151
           P A  +  +S+ PGP N+     GM ++ P P+   +   +  Q           N    
Sbjct: 659 PNAAGMVPVSMNPGP-NMGQPQPGMTSNGPLPDPSMIRGSVPNQMMPRITPQSGLNQFGQ 717

Query: 152 CSLLNKRSLPRNQPQTHHCSNMWQGEALCPPLP-GARM 188
            S+     +PR  P   H   + Q  AL PP+  G RM
Sbjct: 718 MSMAQPPIVPRQTPPLQHHGQLAQPGALNPPMGYGPRM 755


>gi|114520609 neural precursor cell expressed, developmentally
           down-regulated 4 isoform 1 [Homo sapiens]
          Length = 900

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 64  LCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEA------ISSLSLGPGP 117
           L T  GLP   E ++ +  ++ Y      H S   TWT PT +A      ++S     GP
Sbjct: 344 LPTSSGLPPGWEEKQDERGRSYY----VDHNSRTTTWTKPTVQATVETSQLTSSQSSAGP 399

Query: 118 RN-VSSVPVGMVASQPS 133
           ++  S+   G   +QPS
Sbjct: 400 QSQASTSDSGQQVTQPS 416


>gi|114520607 neural precursor cell expressed, developmentally
           down-regulated 4 isoform 2 [Homo sapiens]
          Length = 1247

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 64  LCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEA------ISSLSLGPGP 117
           L T  GLP   E ++ +  ++ Y      H S   TWT PT +A      ++S     GP
Sbjct: 691 LPTSSGLPPGWEEKQDERGRSYY----VDHNSRTTTWTKPTVQATVETSQLTSSQSSAGP 746

Query: 118 RN-VSSVPVGMVASQPS 133
           ++  S+   G   +QPS
Sbjct: 747 QSQASTSDSGQQVTQPS 763


>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
          Length = 1240

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 71  PRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAI 108
           P T   ++L W Q L   V   H S WA+ +SP AEA+
Sbjct: 559 PPTLRMKKLNW-QKLPSNVAREHNSMWASLSSPDAEAV 595


>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
          Length = 1249

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 71  PRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAI 108
           P T   ++L W Q L   V   H S WA+ +SP AEA+
Sbjct: 559 PPTLRMKKLNW-QKLPSNVAREHNSMWASLSSPDAEAV 595


>gi|166235163 nuclear fragile X mental retardation protein
           interacting protein 1 [Homo sapiens]
          Length = 495

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 90  PTSHWSEWATWTSPTAEAISSL-SLGPGPRNVSSVPVGMVASQPSPECLRLTVHMSQQNA 148
           P   W  WA    P     SSL + G  P + S  P+   +   +P      +    Q  
Sbjct: 33  PRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPP 92

Query: 149 RVFCSLLNKRSLPRNQPQTHHCSNMW 174
               S L+ +  P  QP   H S  W
Sbjct: 93  FDAQSPLDSQPQPSGQPWNFHASTSW 118


>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
           sapiens]
          Length = 886

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 61  RASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAEAISS--LSLGPGPR 118
           +A L  H   PR++E   LQ +Q + G++P       +  TS  + +I+S   +  P P 
Sbjct: 511 QAKLKPHSLEPRSQEQPLLQPKQDMLGILPAG-----SPLTSSISSSITSSLAATPPSPV 565

Query: 119 NVSSVPVGMVAS 130
             SSVP GM A+
Sbjct: 566 GTSSVP-GMNAN 576


>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
          Length = 2817

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 95   SEWATWTSPTAEAISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVHMSQQNARVFCSL 154
            S  +T ++ T++  +   + P     SS+P     SQ S  C+   +   QQN +V+ S 
Sbjct: 2324 SSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLS--CMPSLIAQQQQNPQVYVSQ 2381

Query: 155  LNKRSLPRNQPQTHHCSNMWQGEALCPP 182
                 +P     T H  N  Q   L PP
Sbjct: 2382 SAAAQIPAFYMDTSHLFNT-QHARLAPP 2408


>gi|73760403 Kruppel-like factor 10 isoform b [Homo sapiens]
          Length = 469

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 32  SLSGDRLFPHS---AFHTPCALVTQPLVKSLARASLCTHPGLPRT 73
           S +G RL P +    F    A VT  +  S  R+ +C+HPG  +T
Sbjct: 324 SPNGTRLSPIAPAPGFSPSAAKVTPQIDSSRIRSHICSHPGCGKT 368


>gi|5032177 Kruppel-like factor 10 isoform a [Homo sapiens]
          Length = 480

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 32  SLSGDRLFPHS---AFHTPCALVTQPLVKSLARASLCTHPGLPRT 73
           S +G RL P +    F    A VT  +  S  R+ +C+HPG  +T
Sbjct: 335 SPNGTRLSPIAPAPGFSPSAAKVTPQIDSSRIRSHICSHPGCGKT 379


>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
          Length = 2266

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 146  QNARVFCSLLNKRSLPRNQPQTHHCSNMW 174
            + AR+FC  L K   P ++  T   +NMW
Sbjct: 2008 ERARLFCYSLLKEDFPESEKLTLFIANMW 2036


>gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo
           sapiens]
          Length = 375

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 153 SLLNKRSLPRNQPQTHHCSNMWQGEALCPP 182
           SLL  R  PR  P  HHC +   G  L PP
Sbjct: 261 SLLGSRG-PRVHPGPHHCHHQGPGPGLEPP 289


>gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo
           sapiens]
          Length = 485

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)

Query: 91  TSHWSEW-ATW--TSPTAEAISSLSLGP 115
           T HWS+W   W    PT   ISS S GP
Sbjct: 192 TGHWSQWTGLWYHEPPTGSLISSSSPGP 219


>gi|26667243 eyes absent 3 [Homo sapiens]
          Length = 573

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 9/119 (7%)

Query: 47  PCALVTQPLVKSLARASLCTHPGLPRTREHRELQWEQTLYGVVPTSHWSEWATWTSPTAE 106
           P A +    V   A      +  L +T+ +         YG+ P       A W     E
Sbjct: 76  PYAHILSVPVSETAYPGQTQYQTLQQTQPYAVYPQATQTYGLPPFG-----ALWPGMKPE 130

Query: 107 AISSLSLGPGPRNVSSVPVGMVASQPSPECLRLTVHMSQQNARVFCSLLNKRSLPRNQP 165
           +    +  P   +V +   G+  SQPSP      +  S  NA    SL++  S   N P
Sbjct: 131 SGLIQTPSPSQHSVLTCTTGLTTSQPSPAHYSYPIQASSTNA----SLISTSSTIANIP 185


>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
          Length = 1062

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 90  PTSHWSEWATWTSPTAEAISSLSLGPGPRNV--SSVPVGMVASQPSPECLRLTVHMSQQN 147
           P +H+     +          L+ G  P+ +  SS P    A QP+P+ L  TVH S  +
Sbjct: 804 PMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPH 863

Query: 148 --ARVFCSLLNKRSLPR-NQPQTHHCS 171
              ++        + P  +QPQ+ H +
Sbjct: 864 HATQLHAHQPQPATTPTGSQPQSQHAA 890


>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
          Length = 1044

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 90  PTSHWSEWATWTSPTAEAISSLSLGPGPRNV--SSVPVGMVASQPSPECLRLTVHMSQQN 147
           P +H+     +          L+ G  P+ +  SS P    A QP+P+ L  TVH S  +
Sbjct: 804 PMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPH 863

Query: 148 --ARVFCSLLNKRSLPR-NQPQTHHCS 171
              ++        + P  +QPQ+ H +
Sbjct: 864 HATQLHAHQPQPATTPTGSQPQSQHAA 890


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.129    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,453,424
Number of Sequences: 37866
Number of extensions: 443139
Number of successful extensions: 1370
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1362
Number of HSP's gapped (non-prelim): 33
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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