Guide to the Human Genome
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Name: LOC100131389 Sequence: fasta or formatted (195aa) NCBI GI: 239508986
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {195aa} PREDICTED: hypothetical protein
alt mRNA {195aa} PREDICTED: hypothetical protein
alt mRNA {195aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         15           1
 C cysteine            4.6          9           1
 D aspartate           0.5          1           1
 E glutamate           4.6          9           1
 F phenylalanine       2.1          4           1
 G glycine             5.6         11           1
 H histidine           4.1          8           2
 I isoleucine          0.5          1           1
 K lysine              1.5          3           1
 L leucine            11.8         23           2
 M methionine          2.6          5           1
 N asparagine          2.6          5           1
 P proline             9.7         19           2
 Q glutamine           6.2         12           2
 R arginine            6.7         13           1
 S serine             13.3         26           2
 T threonine           5.6         11           1
 V valine              6.7         13           2
 W tryptophan          3.1          6           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131389          1.000   PREDICTED: hypothetical protein 
LOC100131389          1.000   PREDICTED: hypothetical protein 
LOC100131389          1.000   PREDICTED: hypothetical protein 
LOC730456             0.021   PREDICTED: hypothetical protein 
CDX4                  0.021   caudal type homeobox 4 
CABYR                 0.018   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.018   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.018   calcium-binding tyrosine phosphorylation-regulated p...
PACSIN3               0.013   protein kinase C and casein kinase substrate in neur...
ACSS3                 0.013   acyl-CoA synthetase short-chain family member 3 [Hom...
GEN1                  0.010   Gen homolog 1, endonuclease 
GEN1                  0.010   Gen homolog 1, endonuclease 
SMTNL1                0.010   smoothelin-like 1 
EP300                 0.010   E1A binding protein p300 
NEDD4                 0.010   neural precursor cell expressed, developmentally do...
NEDD4                 0.010   neural precursor cell expressed, developmentally do...
INF2                  0.010   inverted formin 2 isoform 2 
INF2                  0.010   inverted formin 2 isoform 1 
NUFIP1                0.008   nuclear fragile X mental retardation protein intera...
UNK                   0.008   zinc finger CCCH-type domain containing 5 
BAT2D1                0.008   HBxAg transactivated protein 2 
KLF10                 0.005   Kruppel-like factor 10 isoform b 
KLF10                 0.005   Kruppel-like factor 10 isoform a 
KIAA0947              0.005   hypothetical protein LOC23379 
LOC100290132          0.005   PREDICTED: hypothetical protein XP_002347089 
LOC100290261          0.005   PREDICTED: hypothetical protein XP_002347648 
EYA3                  0.005   eyes absent 3 
ATXN2L                0.005   ataxin 2 related protein isoform B 
ATXN2L                0.005   ataxin 2 related protein isoform E 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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