Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290132 Sequence: fasta or formatted (375aa) NCBI GI: 239749576
Description:

PREDICTED: hypothetical protein XP_002347089

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         30           2
 C cysteine            3.2         12           2
 D aspartate           3.2         12           2
 E glutamate           5.9         22           2
 F phenylalanine       1.9          7           1
 G glycine            10.7         40           2
 H histidine           5.9         22           2
 I isoleucine          1.1          4           1
 K lysine              2.1          8           1
 L leucine             9.9         37           2
 M methionine          2.9         11           2
 N asparagine          1.9          7           2
 P proline             9.3         35           2
 Q glutamine           4.3         16           1
 R arginine            6.1         23           2
 S serine              9.9         37           2
 T threonine           5.6         21           2
 V valine              5.3         20           2
 W tryptophan          2.7         10           2
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347089 
LOC100132428          0.130   PREDICTED: hypothetical protein 
LOC100289385          0.130   PREDICTED: hypothetical protein XP_002342953 
LOC100132883          0.123   PREDICTED: hypothetical protein 
LOC100132883          0.123   PREDICTED: hypothetical protein 
LOC100291678          0.119   PREDICTED: hypothetical protein XP_002346294 
LOC100130131          0.119   PREDICTED: hypothetical protein 
LOC100129030          0.115   PREDICTED: hypothetical protein 
LOC100289391          0.115   PREDICTED: hypothetical protein XP_002342153 
LOC100130131          0.115   PREDICTED: hypothetical protein 
LOC100130131          0.115   PREDICTED: hypothetical protein 
LOC100132329          0.113   PREDICTED: hypothetical protein 
LOC100131965          0.106   PREDICTED: hypothetical protein 
FAM120C               0.012   hypothetical protein LOC54954 
FOXG1                 0.010   forkhead box G1 
MAST4                 0.010   microtubule associated serine/threonine kinase fami...
FLG                   0.009   filaggrin 
TCF20                 0.009   transcription factor 20 isoform 2 
TCF20                 0.009   transcription factor 20 isoform 1 
FOXC2                 0.009   forkhead box C2 
FES                   0.009   feline sarcoma oncogene isoform 4 
FES                   0.009   feline sarcoma oncogene isoform 3 
FES                   0.009   feline sarcoma oncogene isoform 2 
FES                   0.009   feline sarcoma oncogene isoform 1 
LOC283398             0.008   PREDICTED: similar to hCG1791842 
ZNF837                0.008   zinc finger protein 837 isoform 1 
ZNF837                0.008   zinc finger protein 837 isoform 2 
COL24A1               0.008   collagen, type XXIV, alpha 1 
SF3A2                 0.008   splicing factor 3a, subunit 2 
MSGN1                 0.008   mesogenin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press