Guide to the Human Genome
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Name: LOC100131972 Sequence: fasta or formatted (331aa) NCBI GI: 239508907
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {331aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.0         53           3
 C cysteine            1.5          5           1
 D aspartate           2.1          7           1
 E glutamate           4.5         15           2
 F phenylalanine       1.2          4           1
 G glycine            15.4         51           2
 H histidine           0.6          2           1
 I isoleucine          0.9          3           1
 K lysine              5.4         18           2
 L leucine            11.8         39           4
 M methionine          2.4          8           1
 N asparagine          2.1          7           1
 P proline             8.2         27           2
 Q glutamine           0.0          0           0
 R arginine            3.3         11           1
 S serine              3.9         13           2
 T threonine           3.6         12           2
 V valine             13.9         46           4
 W tryptophan          2.1          7           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131972          1.000   PREDICTED: hypothetical protein 
ELN                   0.016   elastin isoform d precursor 
ELN                   0.016   elastin isoform a precursor 
KDM1                  0.016   amine oxidase (flavin containing) domain 2 isoform a...
KDM1                  0.016   amine oxidase (flavin containing) domain 2 isoform b...
SSBP3                 0.016   single stranded DNA binding protein 3 isoform b [Hom...
ELN                   0.014   elastin isoform e precursor 
ELN                   0.014   elastin isoform c precursor 
ELN                   0.014   elastin isoform b precursor 
KNDC1                 0.013   kinase non-catalytic C-lobe domain (KIND) containin...
SSBP3                 0.013   single stranded DNA binding protein 3 isoform a [Hom...
ABL2                  0.013   arg tyrosine kinase isoform c 
ABL2                  0.013   arg tyrosine kinase isoform b 
ABL2                  0.013   arg tyrosine kinase isoform d 
ABL2                  0.013   arg tyrosine kinase isoform a 
KHSRP                 0.011   KH-type splicing regulatory protein 
TARBP1                0.011   TAR RNA binding protein 1 
ABR                   0.011   active breakpoint cluster region-related  protein is...
ZSWIM5                0.011   zinc finger, SWIM domain containing 5 
HECA                  0.011   headcase 
ADRA1D                0.011   alpha-1D-adrenergic receptor 
PRAGMIN               0.011   pragmin 
INSM1                 0.009   insulinoma-associated 1 
FMNL1                 0.009   formin-like 1 
COL7A1                0.009   alpha 1 type VII collagen precursor 
LTK                   0.009   leukocyte receptor tyrosine kinase isoform 1 precurs...
SPAG8                 0.009   sperm associated antigen 8 isoform 1 
GMEB2                 0.009   glucocorticoid modulatory element binding protein 2 [...
SPAG8                 0.009   sperm associated antigen 8 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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