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Search of human proteins with 239508822
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508822 PREDICTED: hypothetical protein [Homo sapiens]
(64 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169170025 PREDICTED: hypothetical protein [Homo sapiens] 130 2e-31
gi|239508822 PREDICTED: hypothetical protein [Homo sapiens] 130 2e-31
gi|7705431 coiled-coil domain containing 72 [Homo sapiens] 107 3e-24
gi|169161767 PREDICTED: hypothetical protein [Homo sapiens] 102 5e-23
gi|169161534 PREDICTED: hypothetical protein [Homo sapiens] 102 5e-23
gi|169162811 PREDICTED: hypothetical protein [Homo sapiens] 102 5e-23
gi|169169043 PREDICTED: hypothetical protein [Homo sapiens] 65 9e-12
gi|239748872 PREDICTED: hypothetical protein [Homo sapiens] 65 9e-12
gi|239742901 PREDICTED: hypothetical protein [Homo sapiens] 65 9e-12
gi|169164035 PREDICTED: hypothetical protein [Homo sapiens] 55 1e-08
gi|169163250 PREDICTED: hypothetical protein [Homo sapiens] 55 1e-08
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 37 0.003
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|7657218 bromodomain-containing protein 4 isoform short [Homo ... 35 0.013
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 35 0.013
gi|148234215 guanylate binding protein 4-like [Homo sapiens] 35 0.017
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 34 0.022
gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo... 34 0.022
gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ... 34 0.022
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 34 0.022
gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo ... 34 0.022
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 34 0.029
gi|4504425 high-mobility group box 1 [Homo sapiens] 33 0.049
gi|46240864 sperm associated antigen 17 [Homo sapiens] 33 0.049
gi|83700233 eukaryotic translation initiation factor 3, subunit ... 33 0.049
gi|4503525 eukaryotic translation initiation factor 3, subunit C... 33 0.049
gi|117553584 adaptor-related protein complex 3, delta 1 subunit ... 33 0.064
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 33 0.064
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 33 0.064
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 32 0.084
>gi|169170025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 64
Score = 130 bits (327), Expect = 2e-31
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK
Sbjct: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
Query: 61 FAKK 64
FAKK
Sbjct: 61 FAKK 64
>gi|239508822 PREDICTED: hypothetical protein [Homo sapiens]
Length = 64
Score = 130 bits (327), Expect = 2e-31
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK
Sbjct: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
Query: 61 FAKK 64
FAKK
Sbjct: 61 FAKK 64
>gi|7705431 coiled-coil domain containing 72 [Homo sapiens]
Length = 64
Score = 107 bits (266), Expect = 3e-24
Identities = 54/64 (84%), Positives = 55/64 (85%)
Query: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
MSG +GGKKK LKQPKKQAKE DEEDKAFKQKQKEEQKKLEEL KA GK PLATGGIKK
Sbjct: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 FAKK 64
KK
Sbjct: 61 SGKK 64
>gi|169161767 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 102 bits (255), Expect = 5e-23
Identities = 52/64 (81%), Positives = 54/64 (84%)
Query: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
MSG +GGKKK KQPKKQAKE DEEDKAFKQKQKEEQKKLEEL KA GK PLATGGIKK
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 FAKK 64
+K
Sbjct: 61 SGEK 64
>gi|169161534 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 102 bits (255), Expect = 5e-23
Identities = 52/64 (81%), Positives = 54/64 (84%)
Query: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
MSG +GGKKK KQPKKQAKE DEEDKAFKQKQKEEQKKLEEL KA GK PLATGGIKK
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 FAKK 64
+K
Sbjct: 61 SGEK 64
>gi|169162811 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 102 bits (255), Expect = 5e-23
Identities = 52/64 (81%), Positives = 54/64 (84%)
Query: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
MSG +GGKKK KQPKKQAKE DEEDKAFKQKQKEEQKKLEEL KA GK PLATGGIKK
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 FAKK 64
+K
Sbjct: 61 SGEK 64
>gi|169169043 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 65.5 bits (158), Expect = 9e-12
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Query: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNM--KAVGKWPLATGG 57
MSG +GGKKK LKQPKKQAKE DEE +A K+++K E ++ +EL + KAVGK PL G
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|239748872 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 65.5 bits (158), Expect = 9e-12
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Query: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNM--KAVGKWPLATGG 57
MSG +GGKKK LKQPKKQAKE DEE +A K+++K E ++ +EL + KAVGK PL G
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|239742901 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 65.5 bits (158), Expect = 9e-12
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Query: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNM--KAVGKWPLATGG 57
MSG +GGKKK LKQPKKQAKE DEE +A K+++K E ++ +EL + KAVGK PL G
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|169164035 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 55.1 bits (131), Expect = 1e-08
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLE 41
MSG KGGKK+ LKQ K+QAKE D+ED AFKQKQ E + L+
Sbjct: 1 MSGHKGGKKQPLKQHKEQAKEMDKEDVAFKQKQTEAEGALD 41
>gi|169163250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 55.1 bits (131), Expect = 1e-08
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLE 41
MSG KGGKK+ LKQ K+QAKE D+ED AFKQKQ E + L+
Sbjct: 1 MSGHKGGKKQPLKQHKEQAKEMDKEDVAFKQKQTEAEGALD 41
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 37.0 bits (84), Expect = 0.003
Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 3 GSKGGKKKALKQPKKQAK-EKDEEDKAFKQKQKEEQKKLEE 42
G + G+ + + +P ++ K E+ EEDKA K ++KEE+KK EE
Sbjct: 496 GKRRGRNQQIARPSQEEKVEEKEEDKAEKTEKKEEEKKDEE 536
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 10 KALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELN 44
KA K KK+ ++KDEE+K K+ KE K+ ++++
Sbjct: 521 KAEKTEKKEEEKKDEEEKDEKEDSKENTKEKDKID 555
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 36.6 bits (83), Expect = 0.004
Identities = 16/42 (38%), Positives = 31/42 (73%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVG 49
K+K ++ K++ KEK++E + K+K+K+++KK ++LN K G
Sbjct: 78 KEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAKVCG 119
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMK 46
KK K++ KEK++E + K+K+KE++K+ ++ K
Sbjct: 66 KKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKK 104
>gi|7657218 bromodomain-containing protein 4 isoform short [Homo
sapiens]
Length = 722
Score = 35.0 bits (79), Expect = 0.013
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 11 ALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWP 52
AL QP++ +K E+DK K+K+K ++K+ E N K+ K P
Sbjct: 527 ALSQPQQNKPKKKEKDKKEKKKEKHKRKEEVEENKKSKAKEP 568
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 35.0 bits (79), Expect = 0.013
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 11 ALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWP 52
AL QP++ +K E+DK K+K+K ++K+ E N K+ K P
Sbjct: 527 ALSQPQQNKPKKKEKDKKEKKKEKHKRKEEVEENKKSKAKEP 568
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 2 SGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMK 46
S + + +Q ++ A+EK+E +KA K + + +K+ E L +
Sbjct: 1214 SSTAKSSSDSFEQFRRAAREKEEREKALKAQAEHAEKEKERLRQE 1258
>gi|148234215 guanylate binding protein 4-like [Homo sapiens]
Length = 638
Score = 34.7 bits (78), Expect = 0.017
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 6 GGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLE 41
G K A KQ KK+A EK++E +QKQKE+Q+ +E
Sbjct: 484 GEKAIAAKQAKKEAAEKEQE--LLRQKQKEQQQMME 517
>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 34.3 bits (77), Expect = 0.022
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGK 50
+K+ KQPKK + + EEDK K+ K+E KK E K + K
Sbjct: 224 EKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAK 266
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKKFAKK 64
KGG+ + K + E++ A +++++EEQ + E+ N K GK P +KK KK
Sbjct: 289 KGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEQQN-KDEGKKP----EVKKVEKK 343
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 7 GKKKALKQP-KKQAKEKDEEDKAFKQKQKEEQKK 39
G+ K +KQP ++ EEDK+ K+ Q+E+Q K
Sbjct: 195 GRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPK 228
>gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo
sapiens]
Length = 333
Score = 34.3 bits (77), Expect = 0.022
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGK 50
+K+ KQPKK + + EEDK K+ K+E KK E K + K
Sbjct: 224 EKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAK 266
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 7 GKKKALKQP-KKQAKEKDEEDKAFKQKQKEEQKK 39
G+ K +KQP ++ EEDK+ K+ Q+E+Q K
Sbjct: 195 GRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPK 228
>gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 34.3 bits (77), Expect = 0.022
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGK 50
+K+ KQPKK + + EEDK K+ K+E KK E K + K
Sbjct: 224 EKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAK 266
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKKFAKK 64
KGG+ + K + E++ A +++++EEQ + E+ N K GK P +KK KK
Sbjct: 289 KGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEQQN-KDEGKKP----EVKKVEKK 343
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 7 GKKKALKQP-KKQAKEKDEEDKAFKQKQKEEQKK 39
G+ K +KQP ++ EEDK+ K+ Q+E+Q K
Sbjct: 195 GRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPK 228
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 34.3 bits (77), Expect = 0.022
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMK 46
K+K K+ KK+ K+K E++K K+K++E++K+ E K
Sbjct: 697 KEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREK 735
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQK-KLEELNMKAVGKWP 52
K KKK K+ +K+ KE+++E + ++++KE++K K E++ ++ V P
Sbjct: 706 KEKKKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEKIKVEPVALAP 754
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDK-AFKQKQKEEQKKLEE 42
K +KK K+ KK+ KEK++E K ++K+K E++K E+
Sbjct: 697 KEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREK 735
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKA 47
K+K + KK+ +EK ++DK ++K+K + K E+ MKA
Sbjct: 611 KEKEKHKDKKKDREKGKKDKDKREKEKVKDKGRED-KMKA 649
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/35 (28%), Positives = 27/35 (77%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
+K+ +K+ +K+ +K+++ K K+K+K+E+++ +E
Sbjct: 692 EKEKVKEKEKKKDKKEKKKKKEKEKEKKEKEREKE 726
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/32 (40%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 12 LKQPKKQAKEKDEE-DKAFKQKQKEEQKKLEE 42
L + K++ KEK+++ DK K+K+KE++K+ +E
Sbjct: 689 LFEEKEKVKEKEKKKDKKEKKKKKEKEKEKKE 720
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMK 46
KKK K+ K + K+K+++ ++K K + K E+ +K
Sbjct: 522 KKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVK 560
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLE 41
KKK ++ +++ K+K+++ K K KE++K E
Sbjct: 534 KKKEKQRDREREKDKNKDKSKEKDKVKEKEKDKE 567
>gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo
sapiens]
Length = 956
Score = 34.3 bits (77), Expect = 0.022
Identities = 13/34 (38%), Positives = 26/34 (76%)
Query: 9 KKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
K+ K+ K++AK+K EE+K K+K++ E+++ +E
Sbjct: 361 KEEAKRAKEEAKKKKEEEKELKEKERREKREKDE 394
Score = 34.3 bits (77), Expect = 0.022
Identities = 15/43 (34%), Positives = 31/43 (72%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKA 47
K +K+ ++ +++ +EKDE++KA KQ+ KEE++K + ++A
Sbjct: 375 KEEEKELKEKERREKREKDEKEKAEKQRLKEERRKERQEALEA 417
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
K +A ++ K++ KE+ + K +K+KEE+K+L+E
Sbjct: 349 KLRAEREEKEKLKEEAKRAKEEAKKKKEEEKELKE 383
Score = 28.9 bits (63), Expect = 0.92
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 5 KGGKKKALKQPKKQAKEKDEED----KAFKQKQKEEQKKLEE 42
K K+KA KQ K+ + K+ ++ K ++++KEE+K+L E
Sbjct: 392 KDEKEKAEKQRLKEERRKERQEALEAKLEEKRKKEEEKRLRE 433
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 33.9 bits (76), Expect = 0.029
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
K GK + ++ KK+ K K+EE+KA K+K K ++ K +E
Sbjct: 645 KEGKTPSKEKKKKKKKGKEEEEKAAKKKSKHKKSKDKE 682
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKA-FKQKQKEEQKKLEE 42
K KKK ++ +K AK+K + K+ K++ KEE+++ ++
Sbjct: 655 KKKKKKGKEEEEKAAKKKSKHKKSKDKEEGKEERRRRQQ 693
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 33.1 bits (74), Expect = 0.049
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 4 SKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
+K G KA K KK+ +E+DEED+ ++++++E+ + EE
Sbjct: 171 AKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEE 209
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 3 GSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
G KK + + +K K+K+EE+ ++ +EE++ E+
Sbjct: 166 GKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEED 205
>gi|46240864 sperm associated antigen 17 [Homo sapiens]
Length = 2223
Score = 33.1 bits (74), Expect = 0.049
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 3 GSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEEL 43
G + GKKK +K+ ++ +K+K KEEQ K++E+
Sbjct: 963 GKEAGKKKGKDNAEKEDSRSLKKKSPYKEKSKEEQVKIQEV 1003
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 7 GKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAV 48
GK K ++PK+ KE++ KEE+KK EE+ + V
Sbjct: 1179 GKIKGKEKPKESLKEEEH--------PKEEEKKEEEVEPEPV 1212
>gi|83700233 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGI-------KK 60
KK K+A EK EDKA K+ ++ ++ EE G+W GG+ K
Sbjct: 258 KKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGEWERVRGGVPLVKEKPKM 317
Query: 61 FAK 63
FAK
Sbjct: 318 FAK 320
>gi|4503525 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGI-------KK 60
KK K+A EK EDKA K+ ++ ++ EE G+W GG+ K
Sbjct: 258 KKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGEWERVRGGVPLVKEKPKM 317
Query: 61 FAK 63
FAK
Sbjct: 318 FAK 320
>gi|117553584 adaptor-related protein complex 3, delta 1 subunit
isoform 1 [Homo sapiens]
Length = 1112
Score = 32.7 bits (73), Expect = 0.064
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELN 44
+KK+ K KK+ K K++E K+K+KE++KK E+L+
Sbjct: 747 EKKSKKPKKKEKKHKEKERD--KEKKKEKEKKAEDLD 781
Score = 26.2 bits (56), Expect = 6.0
Identities = 9/34 (26%), Positives = 25/34 (73%)
Query: 9 KKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
+K + +K++K+ +++K K+K+++++KK E+
Sbjct: 740 EKDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEK 773
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 32.7 bits (73), Expect = 0.064
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMK 46
K +KK ++ +K+ KE+ + ++ K+++KEE++K E N K
Sbjct: 136 KKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERNRK 177
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMK 46
+K+ ++ KK+ KE+ E + K+++K +++K EE K
Sbjct: 133 RKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKK 171
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 7 GKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMK 46
GKK+ K+ K++ ++ E + ++KQ++E+++ E K
Sbjct: 59 GKKEKKKRKKRERGKERERKRKEREKQRKERREKERRKRK 98
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/37 (27%), Positives = 25/37 (67%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLE 41
K K++ ++ K++ ++K+E +K ++ +KE +K+ E
Sbjct: 148 KREKERGKRERKRKKRKKEEREKKRERNRKERKKERE 184
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
+G +++ K+ KK+ +EK E ++K++ E+K+ E
Sbjct: 153 RGKRERKRKKRKKEEREKKRERNRKERKKERERKERRE 190
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/35 (31%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 7 GKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLE 41
GK++ K+ +++ + K+ +K ++K+K+E+KK E
Sbjct: 72 GKERERKRKEREKQRKERREKE-RRKRKKEKKKRE 105
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/32 (28%), Positives = 23/32 (71%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKK 39
+++ K+ KK+ K + +++ K+K++E+Q+K
Sbjct: 56 RERGKKEKKKRKKRERGKERERKRKEREKQRK 87
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
K K++ K+ +K+ KEK + ++ KQ+ + E+KK +E
Sbjct: 84 KQRKERREKERRKRKKEKKKRER--KQRGRRERKKKKE 119
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKK 39
K +K+ ++ +K+ KE+ E ++ KQ+++ ++KK
Sbjct: 103 KRERKQRGRRERKKKKERKERERENKQRRERKRKK 137
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKK 39
K K+K ++ KK+ + + E K ++K++ E+KK
Sbjct: 159 KRKKRKKEEREKKRERNRKERKKERERKERRERKK 193
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLE 41
K++ ++ +K+ +E+ E + K+++KE +KK E
Sbjct: 171 KRERNRKERKKERERKERRERKKERKKERRKKKE 204
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 32.7 bits (73), Expect = 0.064
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 6 GGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
G K+ KQ K++ K++ E K K+++KE QK+ +E
Sbjct: 716 GSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKE 752
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQK 38
K +K+ KQ K++ K++ E +K K++QK+E+K
Sbjct: 740 KEREKERQKQEKEREKQEKEREKQEKERQKQEKK 773
Score = 29.3 bits (64), Expect = 0.71
Identities = 11/32 (34%), Positives = 25/32 (78%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKK 39
+K+ K+ +KQ KE+++++K ++++KE QK+
Sbjct: 739 EKEREKERQKQEKEREKQEKEREKQEKERQKQ 770
Score = 29.3 bits (64), Expect = 0.71
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVG 49
++K K+ +KQ KE+++++K ++++K+ Q + L KA G
Sbjct: 746 RQKQEKEREKQEKEREKQEKERQKQEKKAQGRKLSLRRKADG 787
Score = 28.9 bits (63), Expect = 0.92
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 8 KKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
+K+ KQ K++ KE+ +++K ++++KE +K+ +E
Sbjct: 732 EKERQKQEKEREKERQKQEKEREKQEKEREKQEKE 766
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 3 GSKGGKKKALKQPKKQAKEKDEEDK---AFKQKQKEEQKKLEE 42
GS +K K+ +KQ KE+ +++K +QKQ++E++K E+
Sbjct: 716 GSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEK 758
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 5 KGGKKKALKQPKKQAKEKDEEDKAFKQ-KQKEEQKKLEELNMK 46
K K++ ++ ++Q +EK+ E + KQ K++E+Q+K E K
Sbjct: 723 KQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEK 765
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 32.3 bits (72), Expect = 0.084
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 4 SKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEE 42
+ G KA K KK+ +E++EED+ ++++K+E+ + EE
Sbjct: 307 ANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEE 345
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.301 0.122 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,586,723
Number of Sequences: 37866
Number of extensions: 109109
Number of successful extensions: 4166
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 2116
Number of HSP's gapped (non-prelim): 1819
length of query: 64
length of database: 18,247,518
effective HSP length: 37
effective length of query: 27
effective length of database: 16,846,476
effective search space: 454854852
effective search space used: 454854852
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.