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Search of human proteins with 238776833
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|238776833 THO complex 4 [Homo sapiens]
(264 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|238776833 THO complex 4 [Homo sapiens] 534 e-152
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 72 5e-13
gi|9558733 transformer-2 alpha [Homo sapiens] 68 7e-12
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 64 1e-10
gi|33620747 myelin expression factor 2 [Homo sapiens] 64 2e-10
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 60 3e-09
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 57 1e-08
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 57 2e-08
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 57 2e-08
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 57 2e-08
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 57 2e-08
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 57 2e-08
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 57 2e-08
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 56 3e-08
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 56 3e-08
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 56 3e-08
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 56 3e-08
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 56 3e-08
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 55 6e-08
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 55 6e-08
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 55 6e-08
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 55 8e-08
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 55 8e-08
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ... 54 1e-07
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b... 54 1e-07
gi|30089919 DNA polymerase delta interacting protein 3 isoform 2... 53 2e-07
gi|29837655 DNA polymerase delta interacting protein 3 isoform 1... 53 2e-07
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 53 3e-07
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 52 4e-07
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 52 4e-07
>gi|238776833 THO complex 4 [Homo sapiens]
Length = 264
Score = 534 bits (1375), Expect = e-152
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MPDSAPAMADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGG 60
MPDSAPAMADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGG
Sbjct: 1 MPDSAPAMADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGG 60
Query: 61 PIRNRPAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNL 120
PIRNRPAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNL
Sbjct: 61 PIRNRPAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNL 120
Query: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180
DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180
Query: 181 RPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGGARGRGRGAGRN 240
RPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGGARGRGRGAGRN
Sbjct: 181 RPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGGARGRGRGAGRN 240
Query: 241 SKQQLSAEELDAQLDAYNARMDTS 264
SKQQLSAEELDAQLDAYNARMDTS
Sbjct: 241 SKQQLSAEELDAQLDAYNARMDTS 264
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 72.0 bits (175), Expect = 5e-13
Identities = 66/236 (27%), Positives = 92/236 (38%), Gaps = 30/236 (12%)
Query: 23 NRSQRGGRGGGR-------GRGRAGSQGGRGGGAQAAARVNRGGGPI-RNRPAIARGAAG 74
N+ Q GG G G GRGR GS GG GGG R + G P R RG G
Sbjct: 196 NQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMG 255
Query: 75 GGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFA 134
G R + P+ + + +S + V L V+ + + F
Sbjct: 256 GSDRGGFNKFGGPRDQGSRHDSEQDNSD---------NNTIFVQGLGENVTIESVADYFK 306
Query: 135 EFGTLKKAA--------VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 185
+ G +K ++ DR +G+ G A V F+ A A+ ++G G P+ +
Sbjct: 307 QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV 366
Query: 186 QLVTSQIDAQRRPAQSVNRGGMTRN--RGAGGFGGGGGTRRGTRGGARGRGRGAGR 239
T + D R RGG R G GG+GGGG G G G G G G+
Sbjct: 367 SFATRRADFNRGGGNG--RGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQ 420
Score = 40.8 bits (94), Expect = 0.001
Identities = 19/40 (47%), Positives = 22/40 (55%)
Query: 203 NRGGMTRNRGAGGFGGGGGTRRGTRGGARGRGRGAGRNSK 242
+RGG R GG GGGGG + GG RGRG GR +
Sbjct: 212 DRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGR 251
Score = 40.4 bits (93), Expect = 0.002
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 21/92 (22%)
Query: 28 GGRG-GGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPAPYSR 86
GG G GGRGRG +GG GGG RGG P G GGGG+ R +
Sbjct: 379 GGNGRGGRGRGGPMGRGGYGGGGSGGG--GRGGFP--------SGGGGGGGQQRAGDWKC 428
Query: 87 P----KQLPDKWQHDLFD------SGFGGGAG 108
P + + W+++ G GGG G
Sbjct: 429 PNPTCENMNFSWRNECNQCKAPKPDGPGGGPG 460
Score = 33.1 bits (74), Expect = 0.26
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 26 QRGGRGG---GRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPA 82
+RGGRGG G RGR G +GG GG RGGG +R G G +R
Sbjct: 472 RRGGRGGYDRGGYRGRGGDRGGFRGG--------RGGG---DRGGFGPGKMDSRGEHRQD 520
Query: 83 PYSRP 87
RP
Sbjct: 521 RRERP 525
Score = 30.8 bits (68), Expect = 1.3
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 204 RGGMTRNRGAGGFGGGGGTRRGTRGGARGRGRG 236
RGG R GG+ G GG R G RGG G RG
Sbjct: 476 RGGYDR----GGYRGRGGDRGGFRGGRGGGDRG 504
Score = 28.9 bits (63), Expect = 4.8
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 206 GMTRNRGAGGFGGGG-GTRRGTRGGARGRGRGAG 238
G R G GG+ GG R G RGG RG GRG G
Sbjct: 469 GDDRRGGRGGYDRGGYRGRGGDRGGFRG-GRGGG 501
Score = 28.1 bits (61), Expect = 8.2
Identities = 17/30 (56%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 27 RGGRGGGR--GRGRAG-SQGGRGGGAQAAA 53
RGG GGG G GR G GG GGG Q A
Sbjct: 394 RGGYGGGGSGGGGRGGFPSGGGGGGGQQRA 423
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 68.2 bits (165), Expect = 7e-12
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 104 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFER 162
G A + L V L ++ D++E+F+ +G L V YD R+GRS G A V+FER
Sbjct: 110 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFER 169
Query: 163 KADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGAGGF--GGGG 220
D+ +AM++ NG+ LDGR + + ++ P + R + G GG GGGG
Sbjct: 170 IDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGG 229
Query: 221 GTRRGTRGGARGRGRGAGR 239
G RR RG RG R
Sbjct: 230 GGRRRDSYYDRGYDRGYDR 248
Score = 28.1 bits (61), Expect = 8.2
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 19/50 (38%)
Query: 37 GRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPAPYSR 86
GR GG GGG GGG G GGGGR R + Y R
Sbjct: 210 GRPTHSGGGGGG---------GGG----------GGGGGGGRRRDSYYDR 240
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 64.3 bits (155), Expect = 1e-10
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMK 171
GKL V L F ++ ++++F+++G + + V DR + RS G V FE DA AM
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 172 QYNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRG-AGGFGGGGGTRRGTRGGA 230
NG +DGR + + D R+RG GG GG G RG RG
Sbjct: 66 AMNGKSVDGRQIRVDQAGKSSD--------------NRSRGYRGGSAGGRGFFRGGRGRG 111
Query: 231 RGRGRGAG 238
RG RG G
Sbjct: 112 RGFSRGGG 119
Score = 33.1 bits (74), Expect = 0.26
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 28 GGRG---GGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNR 80
GGRG GGRGRGR S+GG G +R GG +R + + GG +R
Sbjct: 99 GGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDR 154
Score = 28.1 bits (61), Expect = 8.2
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 23 NRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPA 82
NRS RG RGG G GR +GGRG G +RGGG +GG G +R
Sbjct: 88 NRS-RGYRGGSAG-GRGFFRGGRGRG----RGFSRGGGDRGYGGNRFESRSGGYGGSRDY 141
Query: 83 PYSR 86
SR
Sbjct: 142 YSSR 145
>gi|33620747 myelin expression factor 2 [Homo sapiens]
Length = 600
Score = 63.5 bits (153), Expect = 2e-10
Identities = 34/110 (30%), Positives = 59/110 (53%)
Query: 112 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 171
G + V+NLDF V ++E+F+ GT+K+A + D+ G+S G V FE+ +A++A+
Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 291
Query: 172 QYNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGG 221
+NG L RPM++++ + + + + R G G G G G
Sbjct: 292 MFNGQFLFDRPMHVKMDDKSVPHEEYRSHDGKTPQLPRGLGGIGMGLGPG 341
Score = 43.5 bits (101), Expect = 2e-04
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 7/159 (4%)
Query: 29 GRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPAPYSRPK 88
GR G G GS G G+ + G G R + R G G A R
Sbjct: 445 GRIGSSNMGPVGSGISGGMGSMNSVTGGMGMGLDRMSSSFDRMGPGIG-----AILERSI 499
Query: 89 QLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR 148
+ + SG G + G ++ V NL F ++ ++E F++ G + A + +
Sbjct: 500 DMDRGFLSGPMGSGMRERIGSK-GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME- 557
Query: 149 SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 187
+G+S G V F+ A KA + NG+ + GR ++++L
Sbjct: 558 NGKSKGCGTVRFDSPESAEKACRIMNGIKISGREIDVRL 596
Score = 40.4 bits (93), Expect = 0.002
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 72 AAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQE 131
+ G NR PYS+ K +SG G G ++ +SN+ + + I++
Sbjct: 71 STGSKKANRFHPYSKDK-----------NSGTGEKKGPNRN-RVFISNIPYDMKWQAIKD 118
Query: 132 LFAE-FGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 186
L E G + + D G+S G V F+ + KA++ N L GRP+NI+
Sbjct: 119 LMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK 174
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 59.7 bits (143), Expect = 3e-09
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMK 171
GKL V L+F + +++ F+ FG + + V DR + RS G + F A AM+
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
Query: 172 QYNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGGAR 231
NG LDGR + + R + G + +RG G G G G +R G
Sbjct: 66 AMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGY 125
Query: 232 GRGRGAGRN 240
G G G R+
Sbjct: 126 GYGYGRSRD 134
Score = 29.6 bits (65), Expect = 2.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 10 DKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGG 48
D + +D K R RGG G GRGR+ S+GG G
Sbjct: 73 DGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQG 111
Score = 29.3 bits (64), Expect = 3.7
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 24 RSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNR 80
+S RG RGGG G G RGGG Q G G R + G G GR+R
Sbjct: 84 KSARGTRGGGFGAHGRGRSYSRGGGDQ-------GYGSGRYYDSRPGGYGYGYGRSR 133
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 57.4 bits (137), Expect = 1e-08
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 114 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERK--ADALKAM 170
KL V L V++ D+ E F++FGT++KA + D+ SG+ G V+F+ AD +
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158
Query: 171 KQYNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGGA 230
K + P+ G + ++ + D GGGGG R +RGG
Sbjct: 159 KFH---PIQGHRVEVKKAVPKEDIYS--------------------GGGGGGSRSSRGGR 195
Query: 231 RGRGRGAGRN 240
GRGRG GR+
Sbjct: 196 GGRGRGGGRD 205
Score = 40.8 bits (94), Expect = 0.001
Identities = 33/98 (33%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 23 NRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPA 82
+R RGGRG G GR + G G GGG + GGG N A G GGG +
Sbjct: 191 SRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYN----AYGGGGGGSSYGGS 246
Query: 83 PYSRP-KQLPDKWQHD-----LFDSGFGGGAGVETGGK 114
Y QH + G GGG G GG+
Sbjct: 247 DYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGR 284
Score = 35.4 bits (80), Expect = 0.051
Identities = 35/127 (27%), Positives = 42/127 (33%), Gaps = 56/127 (44%)
Query: 23 NRSQRGGRGG-GRGRGRA---------------GSQGGRGGGAQAAARVNRGG------- 59
+RS RGGRGG GRG GR G GG GGG A GG
Sbjct: 188 SRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSD 247
Query: 60 ------------------GPIRNRPAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDS 101
GP+++ G + GGR+ PY
Sbjct: 248 YGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYR---------------G 292
Query: 102 GFGGGAG 108
G+GGG G
Sbjct: 293 GYGGGGG 299
Score = 35.0 bits (79), Expect = 0.067
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 28 GGRGGGRGRGRAGSQGGRG-GGAQAAARVNRGGGPIRNRPAIARGAAGGGGRN 79
GG GGG R G +GGRG GG + +++GGG N G GGGG N
Sbjct: 182 GGGGGG-SRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYG-GYGGGGGGGYN 232
Score = 28.9 bits (63), Expect = 4.8
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 21/73 (28%)
Query: 43 GGRGGGAQAA--ARVNRGGGPIRNRPAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFD 100
GG GGG++++ R RG G R++ +++G GGGG N Y
Sbjct: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKG--GGGGYNSYGGY---------------- 223
Query: 101 SGFGGGAGVETGG 113
G GGG G G
Sbjct: 224 -GGGGGGGYNAYG 235
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 57.0 bits (136), Expect = 2e-08
Identities = 60/244 (24%), Positives = 94/244 (38%), Gaps = 42/244 (17%)
Query: 34 RGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPAPYSRPKQLPDK 93
R R + S+ R + +R R +R + R+R YSR +
Sbjct: 36 RSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHS 95
Query: 94 WQHDLFDSG---FGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-S 149
H + G A + L V L ++ D++E+F+++G + ++ YD+ S
Sbjct: 96 HSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS 155
Query: 150 GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRG--GM 207
RS G A V+FE DA +A ++ NG+ LDGR + + ++ P + R G
Sbjct: 156 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGS 215
Query: 208 TRNRG--------------------AGGFGGGGGTRRG----------------TRGGAR 231
+R R GG GGGGG R +RGG R
Sbjct: 216 SRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYR 275
Query: 232 GRGR 235
R R
Sbjct: 276 SRSR 279
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 56.6 bits (135), Expect = 2e-08
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMK 171
GKL + L+ + ++ F ++G + + + DR + +S G A V FE ADA A +
Sbjct: 8 GKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
Query: 172 QYNGVPLDGRPMNIQLVTSQI--DAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGG 229
NG LDG+ + + T ++R P +RG RG G GGGG R +RGG
Sbjct: 68 DMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRG-GGGGPRRSPSRGG 126
Score = 29.3 bits (64), Expect = 3.7
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 24 RSQRGGRGGGRGRGRAGSQGG--RGGG---------AQAAARVNRGGGPIRNRPAIARGA 72
R RG RGGG G R+ S+GG GG ++A + RG P R P R A
Sbjct: 106 RFLRGTRGGGGGPRRSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAA 165
Query: 73 AGGGGRN 79
G R+
Sbjct: 166 PSGPARS 172
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 56.6 bits (135), Expect = 2e-08
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 172
GKL + L+ ++ ++ +F + G + + + DR+ +S G A + FE ADA A K
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
Query: 173 YNGVPLDGRPMNIQLV---TSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGG 229
NG L G+ + ++ + Q +RRP S +RNR G + RG+RGG
Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPAS------SRNRSP---SGSLRSARGSRGG 118
Query: 230 ARG 232
RG
Sbjct: 119 TRG 121
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 56.6 bits (135), Expect = 2e-08
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 172
GKL + L+ ++ ++ +F + G + + + DR+ +S G A + FE ADA A K
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
Query: 173 YNGVPLDGRPMNIQLV---TSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGG 229
NG L G+ + ++ + Q +RRP S +RNR G + RG+RGG
Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPAS------SRNRSP---SGSLRSARGSRGG 118
Query: 230 ARG 232
RG
Sbjct: 119 TRG 121
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
[Homo sapiens]
Length = 496
Score = 56.6 bits (135), Expect = 2e-08
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 172
GKL + L+ ++ ++ +F + G + + + DR+ +S G A + FE ADA A K
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
Query: 173 YNGVPLDGRPMNIQLV---TSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGG 229
NG L G+ + ++ + Q +RRP S +RNR G + RG+RGG
Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPAS------SRNRSP---SGSLRSARGSRGG 118
Query: 230 ARG 232
RG
Sbjct: 119 TRG 121
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
[Homo sapiens]
Length = 496
Score = 56.6 bits (135), Expect = 2e-08
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 172
GKL + L+ ++ ++ +F + G + + + DR+ +S G A + FE ADA A K
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
Query: 173 YNGVPLDGRPMNIQLV---TSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGG 229
NG L G+ + ++ + Q +RRP S +RNR G + RG+RGG
Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPAS------SRNRSP---SGSLRSARGSRGG 118
Query: 230 ARG 232
RG
Sbjct: 119 TRG 121
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 56.2 bits (134), Expect = 3e-08
Identities = 69/254 (27%), Positives = 98/254 (38%), Gaps = 72/254 (28%)
Query: 23 NRSQRGGRGGGRGRG--------RAGSQGGRGGGAQAAAR--VNRGGGPIRNRPAIARGA 72
NRS G GRGRG R G GGRGG A R N+ GGP+ P + G
Sbjct: 235 NRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLG- 293
Query: 73 AGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQEL 132
P PD+ DS + V L+ V+ D+ +
Sbjct: 294 --------------PPVDPDE------DSD---------NSAIYVQGLNDSVTLDDLADF 324
Query: 133 FAEFGTLKKAA--------VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 183
F + G +K ++ D+ +G+ G A V +E A A++ ++G G +
Sbjct: 325 FKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKL 384
Query: 184 NIQLVTSQIDAQRRPAQSVNRGGMTRNRGAG----------GFGGGGGT------RRGTR 227
+ L A+++P + RGG+ G G G GG GG R G R
Sbjct: 385 KVSL------ARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDR 438
Query: 228 GGARGRG-RGAGRN 240
GG RG RG+ N
Sbjct: 439 GGFPPRGPRGSRGN 452
Score = 38.1 bits (87), Expect = 0.008
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 27 RGGRGG----GRGRGRAGSQGGRG---GGAQAAARVNRGG--GPIRNRPAIARGAAGGGG 77
RGG GG GRG R G +GGRG GG R GG GP+ + RG GG G
Sbjct: 525 RGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPG 584
Query: 78 R 78
+
Sbjct: 585 K 585
Score = 36.6 bits (83), Expect = 0.023
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 31 GGGRGRGRAGS-QGGRGG-----GAQAAARVNRGG--GPIRNRPAIARGAAGGGGRNRP 81
GG RGRG G +GGRGG G R RGG G R + RG GGG R P
Sbjct: 504 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGP 562
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 198 PAQSVNRGGMTRNRGAGGF----GGGGGTRRGTRGGARGRGRG 236
P RGG RG G GG GG RG RGG RG RG
Sbjct: 503 PGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRG 545
Score = 29.6 bits (65), Expect = 2.8
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 204 RGGMTRNRGAGG-FGGGGGTRRGTRGGARGRGRG 236
RGG+ G GG F GG G RG G RG RG
Sbjct: 519 RGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRG 552
Score = 29.3 bits (64), Expect = 3.7
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 205 GGMTRN-RGA--GGFGGGGGTRRGTRGGARGRGRG 236
GGM R RG GGF GG G RG GG R G G
Sbjct: 529 GGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPG 563
Score = 28.5 bits (62), Expect = 6.3
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 197 RPAQSVNRGGMTRNRGAGGFGGGGGTRRG----------TRGGARGRGRGAGRNSKQQLS 246
R + +RGG RG G GGG R G GG RG G G+ K +
Sbjct: 533 RGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHR 592
Query: 247 AEELD 251
E D
Sbjct: 593 QERRD 597
Score = 28.1 bits (61), Expect = 8.2
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 28 GGRGGGRG----RGRAGSQGGRGGGAQAAAR 54
GGRGG RG RG GS+G GG R
Sbjct: 432 GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHR 462
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 56.2 bits (134), Expect = 3e-08
Identities = 69/253 (27%), Positives = 98/253 (38%), Gaps = 71/253 (28%)
Query: 23 NRSQRGGRGGGRGRG--------RAGSQGGRGG-GAQAAARVNRGGGPIRNRPAIARGAA 73
NRS G GRGRG R G GGRGG GA N+ GGP+ P + G
Sbjct: 291 NRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLG-- 348
Query: 74 GGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELF 133
P PD+ DS + V L+ V+ D+ + F
Sbjct: 349 -------------PPVDPDE------DSD---------NSAIYVQGLNDSVTLDDLADFF 380
Query: 134 AEFGTLKKAA--------VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 184
+ G +K ++ D+ +G+ G A V +E A A++ ++G G +
Sbjct: 381 KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLK 440
Query: 185 IQLVTSQIDAQRRPAQSVNRGGMTRNRGAG----------GFGGGGGT------RRGTRG 228
+ L A+++P + RGG+ G G G GG GG R G RG
Sbjct: 441 VSL------ARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRG 494
Query: 229 GARGRG-RGAGRN 240
G RG RG+ N
Sbjct: 495 GFPPRGPRGSRGN 507
Score = 38.1 bits (87), Expect = 0.008
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 27 RGGRGG----GRGRGRAGSQGGRG---GGAQAAARVNRGG--GPIRNRPAIARGAAGGGG 77
RGG GG GRG R G +GGRG GG R GG GP+ + RG GG G
Sbjct: 580 RGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPG 639
Query: 78 R 78
+
Sbjct: 640 K 640
Score = 36.6 bits (83), Expect = 0.023
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 31 GGGRGRGRAGS-QGGRGG-----GAQAAARVNRGG--GPIRNRPAIARGAAGGGGRNRP 81
GG RGRG G +GGRGG G R RGG G R + RG GGG R P
Sbjct: 559 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGP 617
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 198 PAQSVNRGGMTRNRGAGGF----GGGGGTRRGTRGGARGRGRG 236
P RGG RG G GG GG RG RGG RG RG
Sbjct: 558 PGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRG 600
Score = 29.6 bits (65), Expect = 2.8
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 204 RGGMTRNRGAGG-FGGGGGTRRGTRGGARGRGRG 236
RGG+ G GG F GG G RG G RG RG
Sbjct: 574 RGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRG 607
Score = 29.3 bits (64), Expect = 3.7
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 205 GGMTRN-RGA--GGFGGGGGTRRGTRGGARGRGRG 236
GGM R RG GGF GG G RG GG R G G
Sbjct: 584 GGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPG 618
Score = 28.5 bits (62), Expect = 6.3
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 197 RPAQSVNRGGMTRNRGAGGFGGGGGTRRG----------TRGGARGRGRGAGRNSKQQLS 246
R + +RGG RG G GGG R G GG RG G G+ K +
Sbjct: 588 RGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHR 647
Query: 247 AEELD 251
E D
Sbjct: 648 QERRD 652
Score = 28.1 bits (61), Expect = 8.2
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 137 GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV---PLDGRPMNIQLVTSQID 193
G+ +A Y + S G + ++ Q +G P + R M S D
Sbjct: 245 GSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSM------SGPD 298
Query: 194 AQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRG 225
+ R +RGGM+R GG GG G RG
Sbjct: 299 NRGRGRGGFDRGGMSRGGRGGGRGGMGAGERG 330
Score = 28.1 bits (61), Expect = 8.2
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 28 GGRGGGRG----RGRAGSQGGRGGGAQAAAR 54
GGRGG RG RG GS+G GG R
Sbjct: 487 GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHR 517
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 56.2 bits (134), Expect = 3e-08
Identities = 69/253 (27%), Positives = 98/253 (38%), Gaps = 71/253 (28%)
Query: 23 NRSQRGGRGGGRGRG--------RAGSQGGRGG-GAQAAARVNRGGGPIRNRPAIARGAA 73
NRS G GRGRG R G GGRGG GA N+ GGP+ P + G
Sbjct: 297 NRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLG-- 354
Query: 74 GGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELF 133
P PD+ DS + V L+ V+ D+ + F
Sbjct: 355 -------------PPVDPDE------DSD---------NSAIYVQGLNDSVTLDDLADFF 386
Query: 134 AEFGTLKKAA--------VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 184
+ G +K ++ D+ +G+ G A V +E A A++ ++G G +
Sbjct: 387 KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLK 446
Query: 185 IQLVTSQIDAQRRPAQSVNRGGMTRNRGAG----------GFGGGGGT------RRGTRG 228
+ L A+++P + RGG+ G G G GG GG R G RG
Sbjct: 447 VSL------ARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRG 500
Query: 229 GARGRG-RGAGRN 240
G RG RG+ N
Sbjct: 501 GFPPRGPRGSRGN 513
Score = 38.1 bits (87), Expect = 0.008
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 27 RGGRGG----GRGRGRAGSQGGRG---GGAQAAARVNRGG--GPIRNRPAIARGAAGGGG 77
RGG GG GRG R G +GGRG GG R GG GP+ + RG GG G
Sbjct: 586 RGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPG 645
Query: 78 R 78
+
Sbjct: 646 K 646
Score = 36.6 bits (83), Expect = 0.023
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 31 GGGRGRGRAGS-QGGRGG-----GAQAAARVNRGG--GPIRNRPAIARGAAGGGGRNRP 81
GG RGRG G +GGRGG G R RGG G R + RG GGG R P
Sbjct: 565 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGP 623
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 198 PAQSVNRGGMTRNRGAGGF----GGGGGTRRGTRGGARGRGRG 236
P RGG RG G GG GG RG RGG RG RG
Sbjct: 564 PGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRG 606
Score = 29.6 bits (65), Expect = 2.8
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 204 RGGMTRNRGAGG-FGGGGGTRRGTRGGARGRGRG 236
RGG+ G GG F GG G RG G RG RG
Sbjct: 580 RGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRG 613
Score = 29.3 bits (64), Expect = 3.7
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 205 GGMTRN-RGA--GGFGGGGGTRRGTRGGARGRGRG 236
GGM R RG GGF GG G RG GG R G G
Sbjct: 590 GGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPG 624
Score = 28.5 bits (62), Expect = 6.3
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 197 RPAQSVNRGGMTRNRGAGGFGGGGGTRRG----------TRGGARGRGRGAGRNSKQQLS 246
R + +RGG RG G GGG R G GG RG G G+ K +
Sbjct: 594 RGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHR 653
Query: 247 AEELD 251
E D
Sbjct: 654 QERRD 658
Score = 28.1 bits (61), Expect = 8.2
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 137 GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV---PLDGRPMNIQLVTSQID 193
G+ +A Y + S G + ++ Q +G P + R M S D
Sbjct: 251 GSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSM------SGPD 304
Query: 194 AQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRG 225
+ R +RGGM+R GG GG G RG
Sbjct: 305 NRGRGRGGFDRGGMSRGGRGGGRGGMGAGERG 336
Score = 28.1 bits (61), Expect = 8.2
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 28 GGRGGGRG----RGRAGSQGGRGGGAQAAAR 54
GGRGG RG RG GS+G GG R
Sbjct: 493 GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHR 523
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 56.2 bits (134), Expect = 3e-08
Identities = 69/254 (27%), Positives = 98/254 (38%), Gaps = 72/254 (28%)
Query: 23 NRSQRGGRGGGRGRG--------RAGSQGGRGGGAQAAAR--VNRGGGPIRNRPAIARGA 72
NRS G GRGRG R G GGRGG A R N+ GGP+ P + G
Sbjct: 291 NRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLG- 349
Query: 73 AGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQEL 132
P PD+ DS + V L+ V+ D+ +
Sbjct: 350 --------------PPVDPDE------DSD---------NSAIYVQGLNDSVTLDDLADF 380
Query: 133 FAEFGTLKKAA--------VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 183
F + G +K ++ D+ +G+ G A V +E A A++ ++G G +
Sbjct: 381 FKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKL 440
Query: 184 NIQLVTSQIDAQRRPAQSVNRGGMTRNRGAG----------GFGGGGGT------RRGTR 227
+ L A+++P + RGG+ G G G GG GG R G R
Sbjct: 441 KVSL------ARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDR 494
Query: 228 GGARGRG-RGAGRN 240
GG RG RG+ N
Sbjct: 495 GGFPPRGPRGSRGN 508
Score = 38.1 bits (87), Expect = 0.008
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 27 RGGRGG----GRGRGRAGSQGGRG---GGAQAAARVNRGG--GPIRNRPAIARGAAGGGG 77
RGG GG GRG R G +GGRG GG R GG GP+ + RG GG G
Sbjct: 581 RGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPG 640
Query: 78 R 78
+
Sbjct: 641 K 641
Score = 36.6 bits (83), Expect = 0.023
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 31 GGGRGRGRAGS-QGGRGG-----GAQAAARVNRGG--GPIRNRPAIARGAAGGGGRNRP 81
GG RGRG G +GGRGG G R RGG G R + RG GGG R P
Sbjct: 560 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGP 618
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 198 PAQSVNRGGMTRNRGAGGF----GGGGGTRRGTRGGARGRGRG 236
P RGG RG G GG GG RG RGG RG RG
Sbjct: 559 PGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRG 601
Score = 29.6 bits (65), Expect = 2.8
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 204 RGGMTRNRGAGG-FGGGGGTRRGTRGGARGRGRG 236
RGG+ G GG F GG G RG G RG RG
Sbjct: 575 RGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRG 608
Score = 29.3 bits (64), Expect = 3.7
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 205 GGMTRN-RGA--GGFGGGGGTRRGTRGGARGRGRG 236
GGM R RG GGF GG G RG GG R G G
Sbjct: 585 GGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPG 619
Score = 28.5 bits (62), Expect = 6.3
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 197 RPAQSVNRGGMTRNRGAGGFGGGGGTRRG----------TRGGARGRGRGAGRNSKQQLS 246
R + +RGG RG G GGG R G GG RG G G+ K +
Sbjct: 589 RGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHR 648
Query: 247 AEELD 251
E D
Sbjct: 649 QERRD 653
Score = 28.1 bits (61), Expect = 8.2
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 28 GGRGGGRG----RGRAGSQGGRGGGAQAAAR 54
GGRGG RG RG GS+G GG R
Sbjct: 488 GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHR 518
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 56.2 bits (134), Expect = 3e-08
Identities = 64/220 (29%), Positives = 74/220 (33%), Gaps = 63/220 (28%)
Query: 24 RSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPAP 83
+ Q GGRGGGRG S GGRGG Q R RGG G GGG N
Sbjct: 330 QQQTGGRGGGRGGYEHSSYGGRGGHEQGGGRGGRGG--------YDHGGRGGGRGN---- 377
Query: 84 YSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAA 143
K Q D G GGG G + GG + + G
Sbjct: 378 ---------KHQGGWTDGGSGGGGGYQDGG-------------------YRDSGFQPGGY 409
Query: 144 VHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRRPAQSVN 203
SG G F+ + + Q G D R +
Sbjct: 410 HGGHSSGGYQGGGYGGFQTSSSYTGSGYQGGGYQQDNRYQD------------------- 450
Query: 204 RGGMTRNRGAGGFGGGGGTRRGTRGGARGRGRGAGRNSKQ 243
GG +RG GG GG GG RG RGG G+G G G Q
Sbjct: 451 -GGHHGDRG-GGRGGRGG--RGGRGGRAGQGGGWGGRGSQ 486
Score = 38.9 bits (89), Expect = 0.005
Identities = 32/87 (36%), Positives = 36/87 (41%), Gaps = 22/87 (25%)
Query: 23 NRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPA 82
NR Q GG G RG GR G +GGRGG RGG G GG G
Sbjct: 446 NRYQDGGHHGDRGGGR-GGRGGRGG---------RGG---------RAGQGGGWGGRGSQ 486
Query: 83 PYSRPKQLPDKWQHDLFD---SGFGGG 106
Y + Q +QH + SGFG G
Sbjct: 487 NYHQGGQFEQHFQHGGYQYNHSGFGQG 513
Score = 34.3 bits (77), Expect = 0.11
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 195 QRRPAQSVNRGGMTRNR--GAGGFGGGGGTRRGTRGGARGRGRGAGRNSKQQ 244
Q+ + RGG + G GG GGG RG RGG GRG GR +K Q
Sbjct: 331 QQTGGRGGGRGGYEHSSYGGRGGHEQGGG--RGGRGGYDHGGRGGGRGNKHQ 380
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 55.1 bits (131), Expect = 6e-08
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMK 171
GKL + L+ ++ ++ +F ++G + + + DR + +S G A V FE ADA A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 172 QYNGVPLDGRPMNIQLVT--SQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTR-RGTRG 228
NG LDG+ + ++ T S +R P G R GG GG GGTR +RG
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGL-RGGRGGSGGTRGPPSRG 126
Query: 229 G 229
G
Sbjct: 127 G 127
Score = 29.6 bits (65), Expect = 2.8
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 24 RSQRGGRGGGRGRGRAGSQGGR--GGGAQAAARVNRGGGPIRNRPAIARG---AAGGGGR 78
R RGGRGG G S+GG GG ++ GP+ + RG +GG
Sbjct: 107 RGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPL----PVKRGPPPRSGGPPP 162
Query: 79 NRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETG 112
R AP + SG GG A V G
Sbjct: 163 KRSAPSGPVRS----------SSGMGGRAPVSRG 186
Score = 28.5 bits (62), Expect = 6.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 30 RGGGRGRGRAGSQGGRGGG 48
RG RG GR GS+ RGGG
Sbjct: 369 RGAPRGGGRGGSRSDRGGG 387
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 55.1 bits (131), Expect = 6e-08
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 172
GKL + L+ ++ ++ +F + G + + + DR+ +S G A + FE ADA A K
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
Query: 173 YNGVPLDGRPMNIQLV---TSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGG 229
NG L G+ + ++ + Q +RRP S +RNR G + RG+ GG
Sbjct: 68 MNGTSLHGKAIKVEQAKKPSFQSGGRRRPPAS------SRNRSP---SGSLRSARGSSGG 118
Query: 230 ARG 232
RG
Sbjct: 119 TRG 121
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 55.1 bits (131), Expect = 6e-08
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 172
GKL + L+ ++ ++ +F + G + + + DR+ +S G A + FE ADA A K
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
Query: 173 YNGVPLDGRPMNIQLV---TSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGG 229
NG L G+ + ++ + Q +RRP S +RNR G + RG+ GG
Sbjct: 68 MNGTSLHGKAIKVEQAKKPSFQSGGRRRPPAS------SRNRSP---SGSLRSARGSSGG 118
Query: 230 ARG 232
RG
Sbjct: 119 TRG 121
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 54.7 bits (130), Expect = 8e-08
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMK 171
GKL + L+ ++ ++ +F ++G + + + DR + +S G A V FE ADA A +
Sbjct: 8 GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 172 QYNGVPLDGRPMNIQLVTSQIDAQRR--PAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGG 229
NG LDG+ + ++ T + R P G R GAG G GG +RGG
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGG 127
Score = 29.3 bits (64), Expect = 3.7
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 19/76 (25%)
Query: 27 RGGRGGGRGRGRAGSQGGRGG--------GAQAAARVNRG-----GGPIRNRPA---IAR 70
RGG GG RG G GG ++ V RG GGP R A + R
Sbjct: 113 RGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVR 172
Query: 71 GAAGGGGRNRPAPYSR 86
++G GGR AP SR
Sbjct: 173 SSSGMGGR---APLSR 185
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 54.7 bits (130), Expect = 8e-08
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMK 171
GKL + L+ ++ ++ +F ++G + + + DR + +S G A V FE ADA A +
Sbjct: 8 GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 172 QYNGVPLDGRPMNIQLVTSQIDAQRR--PAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGG 229
NG LDG+ + ++ T + R P G R GAG G GG +RGG
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGG 127
Score = 29.3 bits (64), Expect = 3.7
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 19/76 (25%)
Query: 27 RGGRGGGRGRGRAGSQGGRGG--------GAQAAARVNRG-----GGPIRNRPA---IAR 70
RGG GG RG G GG ++ V RG GGP R A + R
Sbjct: 113 RGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVR 172
Query: 71 GAAGGGGRNRPAPYSR 86
++G GGR AP SR
Sbjct: 173 SSSGMGGR---APLSR 185
>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
[Homo sapiens]
Length = 730
Score = 54.3 bits (129), Expect = 1e-07
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 112 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 171
G + V+NLD+ V ++E+F+ G + +A + D+ G+S G V FE+ +A++A+
Sbjct: 203 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 262
Query: 172 QYNGVPLDGRPMNIQ-----LVTSQIDAQRRPAQSVN-RGGMTRNRGAGG 215
+NG L RPM+++ L RP Q + GG+ G GG
Sbjct: 263 MFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGG 312
Score = 43.9 bits (102), Expect = 1e-04
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 48 GAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGA 107
GA + R+ GP G A GGG A + R ++ F FGG
Sbjct: 585 GANSLERMGPAMGPALGAGIERMGLAMGGGGG--ASFDRAIEMERGNFGGSFAGSFGGAG 642
Query: 108 GVETGG-----KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFER 162
G G ++ V NL F + +++ F E G + A + + +G+S G V FE
Sbjct: 643 GHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFES 701
Query: 163 KADALKAMKQYNGVPLDGRPMNIQL 187
A +A + NG+ L GR +++++
Sbjct: 702 PEVAERACRMMNGMKLSGREIDVRI 726
Score = 37.0 bits (84), Expect = 0.018
Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 6/173 (3%)
Query: 48 GAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSG--FGG 105
G +AAA V + +G G RP Q + + ++ G F
Sbjct: 4 GVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNRFEP 63
Query: 106 GAGVETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDRSGRSLGTADVHFERKA 164
A + ++N+ F V +++L E G + + D G+S G A V F+ +
Sbjct: 64 YANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEE 123
Query: 165 DALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRRPAQSV--NRGGMTRNRGAGG 215
KA + N L GRP+ ++ + RR Q V GGM G G
Sbjct: 124 SMKKAAEVLNKHSLSGRPLKVK-EDPDGEHARRAMQKVMATTGGMGMGPGGPG 175
>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
[Homo sapiens]
Length = 691
Score = 54.3 bits (129), Expect = 1e-07
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 112 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 171
G + V+NLD+ V ++E+F+ G + +A + D+ G+S G V FE+ +A++A+
Sbjct: 164 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 223
Query: 172 QYNGVPLDGRPMNIQ-----LVTSQIDAQRRPAQSVN-RGGMTRNRGAGG 215
+NG L RPM+++ L RP Q + GG+ G GG
Sbjct: 224 MFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGG 273
Score = 43.9 bits (102), Expect = 1e-04
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 48 GAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGA 107
GA + R+ GP G A GGG A + R ++ F FGG
Sbjct: 546 GANSLERMGPAMGPALGAGIERMGLAMGGGGG--ASFDRAIEMERGNFGGSFAGSFGGAG 603
Query: 108 GVETGG-----KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFER 162
G G ++ V NL F + +++ F E G + A + + +G+S G V FE
Sbjct: 604 GHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFES 662
Query: 163 KADALKAMKQYNGVPLDGRPMNIQL 187
A +A + NG+ L GR +++++
Sbjct: 663 PEVAERACRMMNGMKLSGREIDVRI 687
Score = 36.6 bits (83), Expect = 0.023
Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 4/164 (2%)
Query: 48 GAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSG--FGG 105
G +AAA V + +G G RP Q + + ++ G F
Sbjct: 4 GVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNRFEP 63
Query: 106 GAGVETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDRSGRSLGTADVHFERKA 164
A + ++N+ F V +++L E G + + D G+S G A V F+ +
Sbjct: 64 YANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEE 123
Query: 165 DALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMT 208
KA + N L GRP+ ++ + RR Q R G T
Sbjct: 124 SMKKAAEVLNKHSLSGRPLKVK-EDPDGEHARRAMQKAGRLGST 166
>gi|30089919 DNA polymerase delta interacting protein 3 isoform 2
[Homo sapiens]
Length = 392
Score = 53.1 bits (126), Expect = 2e-07
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 112 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 171
G K+ V+NL V++ DI ELF G LK+A + + G A+V F +K DA+ A K
Sbjct: 250 GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDAITAYK 303
Query: 172 QYNGVPLDGRPMNIQL 187
+YN LDG+PM L
Sbjct: 304 KYNNRCLDGQPMKCNL 319
>gi|29837655 DNA polymerase delta interacting protein 3 isoform 1
[Homo sapiens]
Length = 421
Score = 53.1 bits (126), Expect = 2e-07
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 112 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 171
G K+ V+NL V++ DI ELF G LK+A + + G A+V F +K DA+ A K
Sbjct: 279 GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDAITAYK 332
Query: 172 QYNGVPLDGRPMNIQL 187
+YN LDG+PM L
Sbjct: 333 KYNNRCLDGQPMKCNL 348
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 52.8 bits (125), Expect = 3e-07
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 106 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKAD 165
GA + + + N + D +++LF +FG V D SG+S G V FER D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 166 ALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ---RRPAQSVNRGGMTRNRG 212
A KA+ + NG L+G+ + + +++ Q +R + + + +TR +G
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG 293
Score = 45.8 bits (107), Expect = 4e-05
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 112 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 171
G L V NLD G+ D +++ F+ FGT+ A V + GRS G V F +A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVT 351
Query: 172 QYNGVPLDGRPMNIQLVTSQIDAQ 195
+ NG + +P+ + L + + Q
Sbjct: 352 EMNGRIVATKPLYVALAQRKEERQ 375
Score = 41.2 bits (95), Expect = 0.001
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 172
G + + NLD + + + + F+ FG + V D +G S G VHFE + A +A+++
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
Query: 173 YNGVPLDGR 181
NG+ L+ R
Sbjct: 158 MNGMLLNDR 166
Score = 36.6 bits (83), Expect = 0.023
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 115 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQY 173
L V +L V++A + E F+ G + V D + RSLG A V+F++ ADA +A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 174 NGVPLDGRPMNIQLVTSQIDAQRR 197
N + G+P ++++ SQ D R
Sbjct: 73 NFDVIKGKP--VRIMWSQRDPSLR 94
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 52.4 bits (124), Expect = 4e-07
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMK 171
GK + L+ + ++ +F ++G + + + D + +S G A + FER ADA A +
Sbjct: 8 GKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 172 QYNGVPLDGRPMNIQLVTS-QIDAQRR--PAQSVNRGGMTRNRGAGGFGGGGGTRR-GTR 227
NG LDG+ + ++ T ++ RR P +RG R GG GG GGTR +R
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLR--GGRGGSGGTREPPSR 125
Query: 228 GG 229
GG
Sbjct: 126 GG 127
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 52.4 bits (124), Expect = 4e-07
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 113 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMK 171
GK + L+ + ++ +F ++G + + + D + +S G A + FER ADA A +
Sbjct: 8 GKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 172 QYNGVPLDGRPMNIQLVTS-QIDAQRR--PAQSVNRGGMTRNRGAGGFGGGGGTRR-GTR 227
NG LDG+ + ++ T ++ RR P +RG R GG GG GGTR +R
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLR--GGRGGSGGTREPPSR 125
Query: 228 GG 229
GG
Sbjct: 126 GG 127
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,014,427
Number of Sequences: 37866
Number of extensions: 658030
Number of successful extensions: 13564
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 5398
Number of HSP's gapped (non-prelim): 5233
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.