Guide to the Human Genome
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Name: POLDIP3 Sequence: fasta or formatted (392aa) NCBI GI: 30089919
Description:

DNA polymerase delta interacting protein 3 isoform 2

Referenced in:

DNA Polymerases

Other entries for this name:
alt prot [421aa] DNA polymerase delta interacting protein 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         36           3
 C cysteine            1.0          4           1
 D aspartate           5.6         22           3
 E glutamate           4.6         18           2
 F phenylalanine       2.6         10           1
 G glycine             5.4         21           2
 H histidine           1.3          5           2
 I isoleucine          4.3         17           1
 K lysine              9.2         36           2
 L leucine            10.2         40           2
 M methionine          2.6         10           1
 N asparagine          4.1         16           2
 P proline             6.6         26           2
 Q glutamine           4.6         18           2
 R arginine            6.9         27           2
 S serine              8.2         32           3
 T threonine           6.1         24           2
 V valine              6.6         26           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DNA polymerase delta interacting protein 3 isoform 2... 
POLDIP3               0.978   DNA polymerase delta interacting protein 3 isoform 1...
THOC4                 0.038   THO complex 4 
RBM46                 0.022   RNA binding motif protein 46 
RBM19                 0.020   RNA binding motif protein 19 
RBM19                 0.020   RNA binding motif protein 19 
RBM19                 0.020   RNA binding motif protein 19 
RNPS1                 0.018   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.018   RNA-binding protein S1, serine-rich domain 
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prote...
MYEF2                 0.012   myelin expression factor 2 
A1CF                  0.011   apobec-1 complementation factor isoform 3 
A1CF                  0.011   apobec-1 complementation factor isoform 2 
A1CF                  0.011   apobec-1 complementation factor isoform 1 
PCLO                  0.011   piccolo isoform 2 
PCLO                  0.011   piccolo isoform 1 
PABPC4L               0.009   poly(A) binding protein, cytoplasmic 4-like 
ZCRB1                 0.009   zinc finger CCHC-type and RNA binding motif 1 
PHC2                  0.009   polyhomeotic-like 2 isoform a 
PABPC1L               0.008   poly(A)-binding protein, cytoplasmic 1-like 
SF3B4                 0.008   splicing factor 3b, subunit 4 
TJP1                  0.008   tight junction protein 1 isoform b 
TJP1                  0.008   tight junction protein 1 isoform a 
MLL3                  0.008   myeloid/lymphoid or mixed-lineage leukemia 3 
NUMA1                 0.008   nuclear mitotic apparatus protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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