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Search of human proteins with 237858797
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237858797 lymphocyte antigen 6 complex, locus K isoform 3
[Homo sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237858797 lymphocyte antigen 6 complex, locus K isoform 3 [Ho... 224 1e-59
gi|237858795 lymphocyte antigen 6 complex, locus K isoform 2 [Ho... 160 2e-40
gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1 [Ho... 159 6e-40
gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III ... 34 0.028
gi|22749359 phosphatidylinositol-3-phosphate 5-kinase type III i... 34 0.028
gi|4504033 glycosylphosphatidylinositol anchored molecule like p... 31 0.18
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 31 0.24
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 31 0.24
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 31 0.24
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 27 3.4
gi|238814389 zinc finger, MYND domain containing 11 isoform a [H... 27 4.5
gi|238814385 zinc finger, MYND domain containing 11 isoform a [H... 27 4.5
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 27 4.5
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 27 4.5
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 27 4.5
gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens] 27 4.5
gi|33300649 family with sequence similarity 19 (chemokine (C-C m... 27 4.5
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 26 5.9
gi|116268101 leucine rich repeat containing 62 [Homo sapiens] 26 5.9
gi|116292750 lipoprotein Lp(a) precursor [Homo sapiens] 26 7.7
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 26 7.7
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 26 7.7
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 26 7.7
>gi|237858797 lymphocyte antigen 6 complex, locus K isoform 3 [Homo
sapiens]
Length = 105
Score = 224 bits (570), Expect = 1e-59
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 61 KWTEPYCVIAAVTVLRWLCSDGETQARGEAVSPGRAHALLLPQVL 105
KWTEPYCVIAAVTVLRWLCSDGETQARGEAVSPGRAHALLLPQVL
Sbjct: 61 KWTEPYCVIAAVTVLRWLCSDGETQARGEAVSPGRAHALLLPQVL 105
>gi|237858795 lymphocyte antigen 6 complex, locus K isoform 2
[Homo sapiens]
Length = 120
Score = 160 bits (406), Expect = 2e-40
Identities = 74/76 (97%), Positives = 74/76 (97%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 61 KWTEPYCVIAAVTVLR 76
KWTEPYCVIAAVT R
Sbjct: 61 KWTEPYCVIAAVTTPR 76
>gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1
[Homo sapiens]
Length = 165
Score = 159 bits (401), Expect = 6e-40
Identities = 72/74 (97%), Positives = 73/74 (98%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 61 KWTEPYCVIAAVTV 74
KWTEPYCVIAAV +
Sbjct: 61 KWTEPYCVIAAVKI 74
>gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III
isoform 2 [Homo sapiens]
Length = 2098
Score = 33.9 bits (76), Expect = 0.028
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 VWCHVCERENTFECQNPRRCKWTEPYCVIAAVTVLRWLCSDGETQARGEAVSPGRA 96
+W +C + E Q+ R T P C++ ++ WL +G R +A++ G+A
Sbjct: 358 LWKKICHHSSGMEFQDHRYWLRTHPNCIVGK-ELVNWLIRNGHIATRAQAIAIGQA 412
>gi|22749359 phosphatidylinositol-3-phosphate 5-kinase type III
isoform 3 [Homo sapiens]
Length = 451
Score = 33.9 bits (76), Expect = 0.028
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 VWCHVCERENTFECQNPRRCKWTEPYCVIAAVTVLRWLCSDGETQARGEAVSPGRA 96
+W +C + E Q+ R T P C++ ++ WL +G R +A++ G+A
Sbjct: 261 LWKKICHHSSGMEFQDHRYWLRTHPNCIVGK-ELVNWLIRNGHIATRAQAIAIGQA 315
>gi|4504033 glycosylphosphatidylinositol anchored molecule like
protein [Homo sapiens]
Length = 158
Score = 31.2 bits (69), Expect = 0.18
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
M L ALLL + LP V A + A + + CH C N F C N R C
Sbjct: 1 MLLFALLLAMELPLVAASATMRA------------QWTYSLRCHDCAVINDFNCPNIRVC 48
Query: 61 KWTEPYCVIAAVTV 74
+ C+ ++ +
Sbjct: 49 PYHIRRCMTISIRI 62
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 24 RQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYC 67
+Q + E Q DE + WC C++E F C C W YC
Sbjct: 958 KQLELEKQQAVDETKKKQWCANCKKEAIFYC-----C-WNTSYC 995
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 24 RQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYC 67
+Q + E Q DE + WC C++E F C C W YC
Sbjct: 983 KQLELEKQQAVDETKKKQWCANCKKEAIFYC-----C-WNTSYC 1020
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 24 RQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYC 67
+Q + E Q DE + WC C++E F C C W YC
Sbjct: 983 KQLELEKQQAVDETKKKQWCANCKKEAIFYC-----C-WNTSYC 1020
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 26.9 bits (58), Expect = 3.4
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 27 DPEDSQRTDEGDNRVWC--HVCERENTFECQNPRRCKWTEPYC 67
D ED + +N C VC F C+N R C W C
Sbjct: 3674 DGEDDCGDNSDENPEECARFVCPPNRPFRCKNDRVCLWIGRQC 3716
>gi|238814389 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 29 EDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYCVI 69
+ Q + + WC+ CE E + C C W YC I
Sbjct: 549 QHKQLISQTKKKQWCYNCEEEAMYHC-----C-WNTSYCSI 583
>gi|238814385 zinc finger, MYND domain containing 11 isoform a [Homo
sapiens]
Length = 602
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 29 EDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYCVI 69
+ Q + + WC+ CE E + C C W YC I
Sbjct: 549 QHKQLISQTKKKQWCYNCEEEAMYHC-----C-WNTSYCSI 583
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCV 68
CHVC N C NP RC YC+
Sbjct: 23 CHVCAY-NGDNCFNPMRCPAMVAYCM 47
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCV 68
CHVC N C NP RC YC+
Sbjct: 23 CHVCAY-NGDNCFNPMRCPAMVAYCM 47
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCV 68
CHVC N C NP RC YC+
Sbjct: 23 CHVCAY-NGDNCFNPMRCPAMVAYCM 47
>gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo
sapiens]
Length = 131
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCV 68
CHVC N C NP RC YC+
Sbjct: 23 CHVCAY-NGDNCFNPMRCPAMVAYCM 47
>gi|33300649 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A3 isoform 1 [Homo sapiens]
Length = 133
Score = 26.6 bits (57), Expect = 4.5
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 19/88 (21%)
Query: 7 LLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWC-HVC-------ERENTFECQ--- 55
LL + L +WT L A Q P + +G V H C ER T +C
Sbjct: 15 LLALCLAWLWTHLTLAALQ-PPTATVLVQQGTCEVIAAHRCCNRNRIEERSQTVKCSCFS 73
Query: 56 ----NPRRCKWTEPYCVIAAVTVLRWLC 79
R K P CV A++ + RW C
Sbjct: 74 GQVAGTTRAK---PSCVDASIVLQRWWC 98
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 PYCVIAAVTVLRWLCSDGETQARGEAVS 92
P C+ AAV + L DGE + G AVS
Sbjct: 1844 PACICAAVLPIVHLMEDGEVREDGVAVS 1871
>gi|116268101 leucine rich repeat containing 62 [Homo sapiens]
Length = 820
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 41 VWCHVCERENTFECQNPRRCKW-----TEPYCVIAAVTVLRWLCSDGETQAR 87
V+ +V + + +C++PR PY + A+TVL+ C +G AR
Sbjct: 202 VFNNVTKNYDRLQCESPREFAGYPLLVPRPYHSLNAITVLQAKCRNGSLPAR 253
>gi|116292750 lipoprotein Lp(a) precursor [Homo sapiens]
Length = 2040
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 33 RTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYCVIAAVTVLRWLCSDGETQARGEAVS 92
R + + R WC+ + +E N +C TE V+A +TV+ ++ ++ S
Sbjct: 1104 RNPDAEIRPWCYTMDPSVRWEYCNLTQCLVTES-SVLATLTVVPDPSTEASSEEAPTEQS 1162
Query: 93 PG 94
PG
Sbjct: 1163 PG 1164
>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVT 73
CHVC C++ C T+ YCVI T
Sbjct: 23 CHVCCGHE--HCESLVECAPTDKYCVITRAT 51
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVT 73
CHVC C++ C T+ YCVI T
Sbjct: 23 CHVCCGHE--HCESLVECAPTDKYCVITRAT 51
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVT 73
CHVC C++ C T+ YCVI T
Sbjct: 23 CHVCCGHE--HCESLVECAPTDKYCVITRAT 51
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.134 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,543,962
Number of Sequences: 37866
Number of extensions: 191232
Number of successful extensions: 450
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 30
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.