Guide to the Human Genome
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Name: APCDD1L Sequence: fasta or formatted (501aa) NCBI GI: 23503291
Description:

adenomatosis polyposis coli down-regulated 1-like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         43           2
 C cysteine            2.8         14           1
 D aspartate           3.2         16           1
 E glutamate           4.8         24           2
 F phenylalanine       3.6         18           1
 G glycine             8.2         41           2
 H histidine           5.2         26           2
 I isoleucine          1.6          8           1
 K lysine              1.2          6           1
 L leucine            12.0         60           2
 M methionine          1.4          7           1
 N asparagine          0.8          4           1
 P proline            10.8         54           3
 Q glutamine           3.8         19           2
 R arginine            9.2         46           2
 S serine              5.8         29           2
 T threonine           6.2         31           2
 V valine              6.0         30           1
 W tryptophan          1.8          9           2
 Y tyrosine            3.2         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   adenomatosis polyposis coli down-regulated 1-like [H... 
APCDD1                0.416   adenomatosis polyposis coli down-regulated 1 
CDC42BPB              0.010   CDC42-binding protein kinase beta 
RBM33                 0.007   RNA binding motif protein 33 
CXorf67               0.006   hypothetical protein LOC340602 
FLJ22184              0.006   PREDICTED: hypothetical protein FLJ22184 
LOC100292408          0.006   PREDICTED: hypothetical protein 
LOC100133161          0.005   PREDICTED: hypothetical protein 
LOC100132062          0.005   PREDICTED: hypothetical protein 
LOC100132062          0.005   PREDICTED: hypothetical protein 
RERE                  0.005   atrophin-1 like protein isoform b 
RERE                  0.005   atrophin-1 like protein isoform a 
RERE                  0.005   atrophin-1 like protein isoform a 
GPR144                0.005   G protein-coupled receptor 144 
FLJ22184              0.005   PREDICTED: hypothetical protein LOC80164 
CNTLN                 0.005   centlein isoform 1 
CACNA1G               0.004   voltage-dependent calcium channel alpha 1G subunit i...
LOC100129520          0.004   PREDICTED: similar to hCG2044193 
LOC100129520          0.004   PREDICTED: similar to hCG2044193 
LOC100129520          0.004   PREDICTED: hypothetical protein LOC100129520 
LOC731275             0.004   PREDICTED: hypothetical protein 
LOC100132287          0.004   PREDICTED: hypothetical protein 
KDM2B                 0.004   F-box and leucine-rich repeat protein 10 isoform a [...
KDM2B                 0.004   F-box and leucine-rich repeat protein 10 isoform b [...
CACNA1G               0.004   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.004   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.004   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.004   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.004   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.004   voltage-dependent calcium channel alpha 1G subunit i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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