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Search of human proteins with 23397644
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23397644 GREB1 protein isoform b [Homo sapiens]
(457 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23397644 GREB1 protein isoform b [Homo sapiens] 941 0.0
gi|23397642 GREB1 protein isoform a [Homo sapiens] 924 0.0
gi|116734676 GREB1 protein isoform c [Homo sapiens] 797 0.0
gi|219282747 KIAA1772 [Homo sapiens] 407 e-114
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 36 0.064
gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens] 35 0.11
gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens] 35 0.11
gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens] 34 0.24
gi|62955044 F-box protein 42 [Homo sapiens] 34 0.32
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 33 0.54
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 33 0.54
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 33 0.54
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom... 33 0.54
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 33 0.54
gi|182765442 homeobox A10 isoform a [Homo sapiens] 33 0.70
gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens] 32 1.2
gi|163965366 nascent polypeptide-associated complex alpha subuni... 32 1.2
gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens] 32 1.6
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 32 1.6
gi|47271475 SPOC domain containing 1 [Homo sapiens] 32 1.6
gi|156938336 class II transactivator [Homo sapiens] 31 2.0
gi|34808710 solute carrier family 19 member 1 [Homo sapiens] 31 2.0
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 31 2.0
gi|157785645 SPEG complex locus [Homo sapiens] 31 2.0
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 31 2.0
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 31 2.7
gi|169213985 PREDICTED: similar to hCG2036794 [Homo sapiens] 31 2.7
gi|18641360 collectin sub-family member 12 [Homo sapiens] 31 2.7
gi|24308179 CTTNBP2 N-terminal like [Homo sapiens] 31 2.7
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 31 2.7
>gi|23397644 GREB1 protein isoform b [Homo sapiens]
Length = 457
Score = 941 bits (2433), Expect = 0.0
Identities = 457/457 (100%), Positives = 457/457 (100%)
Query: 1 MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQQLAALEGGSRVDNE 60
MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQQLAALEGGSRVDNE
Sbjct: 1 MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQQLAALEGGSRVDNE 60
Query: 61 EEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDGFCQAGKDLRLVSISNEPMDVPAGFLLV 120
EEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDGFCQAGKDLRLVSISNEPMDVPAGFLLV
Sbjct: 61 EEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDGFCQAGKDLRLVSISNEPMDVPAGFLLV 120
Query: 121 GVKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLT 180
GVKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLT
Sbjct: 121 GVKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLT 180
Query: 181 TQPKKQKHLKYYLVRNAQGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALESTAAFPS 240
TQPKKQKHLKYYLVRNAQGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALESTAAFPS
Sbjct: 181 TQPKKQKHLKYYLVRNAQGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALESTAAFPS 240
Query: 241 EPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSAL 300
EPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSAL
Sbjct: 241 EPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSAL 300
Query: 301 GILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGPASVTFP 360
GILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGPASVTFP
Sbjct: 301 GILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGPASVTFP 360
Query: 361 VVASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVVSPLLYTCYQNSQSVSRA 420
VVASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVVSPLLYTCYQNSQSVSRA
Sbjct: 361 VVASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVVSPLLYTCYQNSQSVSRA 420
Query: 421 YEQYGASAIQPISEEMQLLLTVYYLVQLAHQIRNPDV 457
YEQYGASAIQPISEEMQLLLTVYYLVQLAHQIRNPDV
Sbjct: 421 YEQYGASAIQPISEEMQLLLTVYYLVQLAHQIRNPDV 457
>gi|23397642 GREB1 protein isoform a [Homo sapiens]
Length = 1949
Score = 924 bits (2388), Expect = 0.0
Identities = 449/449 (100%), Positives = 449/449 (100%)
Query: 1 MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQQLAALEGGSRVDNE 60
MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQQLAALEGGSRVDNE
Sbjct: 1 MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQQLAALEGGSRVDNE 60
Query: 61 EEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDGFCQAGKDLRLVSISNEPMDVPAGFLLV 120
EEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDGFCQAGKDLRLVSISNEPMDVPAGFLLV
Sbjct: 61 EEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDGFCQAGKDLRLVSISNEPMDVPAGFLLV 120
Query: 121 GVKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLT 180
GVKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLT
Sbjct: 121 GVKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLT 180
Query: 181 TQPKKQKHLKYYLVRNAQGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALESTAAFPS 240
TQPKKQKHLKYYLVRNAQGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALESTAAFPS
Sbjct: 181 TQPKKQKHLKYYLVRNAQGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALESTAAFPS 240
Query: 241 EPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSAL 300
EPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSAL
Sbjct: 241 EPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSAL 300
Query: 301 GILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGPASVTFP 360
GILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGPASVTFP
Sbjct: 301 GILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGPASVTFP 360
Query: 361 VVASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVVSPLLYTCYQNSQSVSRA 420
VVASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVVSPLLYTCYQNSQSVSRA
Sbjct: 361 VVASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVVSPLLYTCYQNSQSVSRA 420
Query: 421 YEQYGASAIQPISEEMQLLLTVYYLVQLA 449
YEQYGASAIQPISEEMQLLLTVYYLVQLA
Sbjct: 421 YEQYGASAIQPISEEMQLLLTVYYLVQLA 449
>gi|116734676 GREB1 protein isoform c [Homo sapiens]
Length = 409
Score = 797 bits (2059), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQQLAALEGGSRVDNE 60
MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQQLAALEGGSRVDNE
Sbjct: 1 MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQQLAALEGGSRVDNE 60
Query: 61 EEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDGFCQAGKDLRLVSISNEPMDVPAGFLLV 120
EEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDGFCQAGKDLRLVSISNEPMDVPAGFLLV
Sbjct: 61 EEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDGFCQAGKDLRLVSISNEPMDVPAGFLLV 120
Query: 121 GVKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLT 180
GVKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLT
Sbjct: 121 GVKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFSGNCVGCGKKGFCYFTEFSNHINLKLT 180
Query: 181 TQPKKQKHLKYYLVRNAQGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALESTAAFPS 240
TQPKKQKHLKYYLVRNAQGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALESTAAFPS
Sbjct: 181 TQPKKQKHLKYYLVRNAQGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALESTAAFPS 240
Query: 241 EPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSAL 300
EPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSAL
Sbjct: 241 EPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSAL 300
Query: 301 GILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGPASVTFP 360
GILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGPASVTFP
Sbjct: 301 GILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGPASVTFP 360
Query: 361 VVASGEPVSVPDNLLKICKAKPVIFK 386
VVASGEPVSVPDNLLKICKAKPVIFK
Sbjct: 361 VVASGEPVSVPDNLLKICKAKPVIFK 386
>gi|219282747 KIAA1772 [Homo sapiens]
Length = 1923
Score = 407 bits (1047), Expect = e-114
Identities = 239/481 (49%), Positives = 294/481 (61%), Gaps = 50/481 (10%)
Query: 1 MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQ-------------- 46
MGNSYAGQLK+ RFEE LHNSIEASLR +++VPRPIFSQLYL+ +Q
Sbjct: 1 MGNSYAGQLKSARFEEALHNSIEASLRCSSVVPRPIFSQLYLDPDQHPFSSADVKPKVED 60
Query: 47 ----------QLAALEGGSR--VDNEEEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDGF 94
Q +L+ + V+ E++E+ E ++N PP P+ P PEG CTTDGF
Sbjct: 61 LDKDLVNRYTQNGSLDFSNNLTVNEMEDDEDDEEMSDSNSPPIPYSQKPAPEGSCTTDGF 120
Query: 95 CQAGKDLRLVSISNEPMDVPAGFLLVGVKSPSLPDHLLVCAVDKRFLPDDNGHNALLGFS 154
CQAGKDLRLVS+ E +D+PAGFLLVG KSP+LP+H+LVCAVDKRFLPDD+G NALLGFS
Sbjct: 121 CQAGKDLRLVSLCMEQIDIPAGFLLVGAKSPNLPEHILVCAVDKRFLPDDHGKNALLGFS 180
Query: 155 GNCVGCGKKGFCYFTEFSNHINLKLTTQPKKQKHLKYYLVRNAQGTLTKGPLICWKGSEF 214
GNC+GCG++GF YFTEFSNHINLKLTTQPKKQKHLKYYLVR++QG L+KGPLICWK E
Sbjct: 181 GNCIGCGERGFRYFTEFSNHINLKLTTQPKKQKHLKYYLVRSSQGVLSKGPLICWK--EC 238
Query: 215 RSRQIPASTCSSSLFPALESTAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAV 274
RSRQ AS S ++ ST P GT G Q +AA G +
Sbjct: 239 RSRQSSASCHSIKPSSSVSSTVT----PENGTTNGYKSGFTQT---------DAANGNSS 285
Query: 275 FNGKDSPKCQQLAKNNLLAL-PRPSAL----GILSNSGPPKKRHKGWSPESPSAPDGGCP 329
GK S A +L PRPS + SGPPKKRH+GW P SP G
Sbjct: 286 HGGKGSASSSTPAHTGNYSLSPRPSYASGDQATMFISGPPKKRHRGWYPGSPLPQPGLVV 345
Query: 330 QGGGNR--AKYESAGMSCVPQVGLVGPASVTFPVVASGEPVSVPDNLLKICKAKPVIFKG 387
R ++ E + VPQ L G + +GE V VP+NLL +PVI G
Sbjct: 346 PVPTVRPLSRTEPLLSAPVPQTPLTGILQPR--PIPAGETVIVPENLLSNSGVRPVILIG 403
Query: 388 HGNFPYLCGNLNDVVVSPLLYTCYQNSQSVSRAYEQYGASAIQPISEEMQLLLTVYYLVQ 447
+G PY GN+ D+VVSPLL CY+ Q ++ E+ G + Q +S E +LLT+ YLV+
Sbjct: 404 YGTLPYFYGNVGDIVVSPLLVNCYKIPQLENKDLEKLGLTGSQFLSVENMILLTIQYLVR 463
Query: 448 L 448
L
Sbjct: 464 L 464
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 36.2 bits (82), Expect = 0.064
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 212 SEFRSRQ-----IPASTCSSSLFPALESTAAFPSEPVPGTNPSILMGAQQAGPASDHPSL 266
S+FR+R+ +P + PA T P P P P+ G AGPAS P
Sbjct: 24 SQFRTREGFYKLLPGDGAARRSGPASAQTPVPPQPPQPPPGPASASGPGAAGPASSPPPA 83
Query: 267 NAAMGPAV 274
GPA+
Sbjct: 84 GPGPGPAL 91
>gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens]
Length = 861
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 250 ILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNL--LALPRPSALGILSNSG 307
+L ++ P+ P+ ++ +G + +G + PK AK+ LPRPS+ +S+S
Sbjct: 354 LLTSTREILPSQSGPAQDSLLGSSGSSGPE-PKVASPAKSRPPNSVLPRPSSANSISSS- 411
Query: 308 PPKKRHKGWSPESPSAPDGG 327
H G +PE P P GG
Sbjct: 412 -TSSNHSGHTPEPPLPPVGG 430
>gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens]
Length = 738
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 250 ILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNL--LALPRPSALGILSNSG 307
+L ++ P+ P+ ++ +G + +G + PK AK+ LPRPS+ +S+S
Sbjct: 230 LLTSTREILPSQSGPAQDSLLGSSGSSGPE-PKVASPAKSRPPNSVLPRPSSANSISSS- 287
Query: 308 PPKKRHKGWSPESPSAPDGG 327
H G +PE P P GG
Sbjct: 288 -TSSNHSGHTPEPPLPPVGG 306
>gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens]
Length = 1049
Score = 34.3 bits (77), Expect = 0.24
Identities = 33/97 (34%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 219 IPASTCSSSLFPALESTAAFPSEPVPGTNPSILMGAQQAG---PASDHPSLNAAMGPAVF 275
IPA + +PA A+PS PVP + G G PA PSL A GP +
Sbjct: 923 IPAEAAAQG-YPAPPPAPAWPSRPVPRSGAHWSHGPPPPGMPPPAWRQPSLLAPPGPPNW 981
Query: 276 NGKDSPKCQQLAKNNLLALPRPSALGILSNSGPPKKR 312
G P Q PR AL +L NS P +R
Sbjct: 982 LG---PPTQS-------GTPRGGALLLLRNSPQPLRR 1008
>gi|62955044 F-box protein 42 [Homo sapiens]
Length = 717
Score = 33.9 bits (76), Expect = 0.32
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 260 ASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSALGILSNSGPPKKRHKGWSP 318
+S PS +AA+ P + + SP Q L+ + +PRP +S PP R G P
Sbjct: 567 SSKGPSASAALSPPLGSSPGSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRLGHHP 625
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 33.1 bits (74), Expect = 0.54
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 210 KGSEFRSRQIPASTCSSSLFPALESTAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAA 269
+GS R PA+ + + A+ AA P P + G A + P L++
Sbjct: 319 RGSSTCLRPSPATWQGGAPYRAI--FAAGPRLSAPSAEAEEVPGGHTASNPTYEP-LSSR 375
Query: 270 MGPAVFNGKDSPKCQQLAKNNLLALPRPSALGILSNSGPPKKRHKGWSPESPSAP 324
A G+DSP + + L R S LG +++ P + WSP SPS P
Sbjct: 376 RTKAPSEGRDSPSSPATSTHYL---DRESGLGSVNSH--PSRSPYNWSPPSPSVP 425
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 33.1 bits (74), Expect = 0.54
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 210 KGSEFRSRQIPASTCSSSLFPALESTAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAA 269
+GS R PA+ + + A+ AA P P + G A + P L++
Sbjct: 413 RGSSTCLRPSPATWQGGAPYRAI--FAAGPRLSAPSAEAEEVPGGHTASNPTYEP-LSSR 469
Query: 270 MGPAVFNGKDSPKCQQLAKNNLLALPRPSALGILSNSGPPKKRHKGWSPESPSAP 324
A G+DSP + + L R S LG +++ P + WSP SPS P
Sbjct: 470 RTKAPSEGRDSPSSPATSTHYL---DRESGLGSVNSH--PSRSPYNWSPPSPSVP 519
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 33.1 bits (74), Expect = 0.54
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 210 KGSEFRSRQIPASTCSSSLFPALESTAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAA 269
+GS R PA+ + + A+ AA P P + G A + P L++
Sbjct: 413 RGSSTCLRPSPATWQGGAPYRAI--FAAGPRLSAPSAEAEEVPGGHTASNPTYEP-LSSR 469
Query: 270 MGPAVFNGKDSPKCQQLAKNNLLALPRPSALGILSNSGPPKKRHKGWSPESPSAP 324
A G+DSP + + L R S LG +++ P + WSP SPS P
Sbjct: 470 RTKAPSEGRDSPSSPATSTHYL---DRESGLGSVNSH--PSRSPYNWSPPSPSVP 519
>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
sapiens]
Length = 363
Score = 33.1 bits (74), Expect = 0.54
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 18/110 (16%)
Query: 235 TAAFPSEP---VPGTNPSILMGAQQAGP-ASDHPSLN------------AAMGPAVFNGK 278
T PS+P +PG+ P +L GA + P A HPS+ A++GP + G
Sbjct: 137 TLRMPSQPPAGLPGSQP-LLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGG 195
Query: 279 DSPKCQQLAKNNLLALPR-PSALGILSNSGPPKKRHKGWSPESPSAPDGG 327
P LA L A+ P G ++ + SP S + P GG
Sbjct: 196 MRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGG 245
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 33.1 bits (74), Expect = 0.54
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 18/110 (16%)
Query: 235 TAAFPSEP---VPGTNPSILMGAQQAGP-ASDHPSLN------------AAMGPAVFNGK 278
T PS+P +PG+ P +L GA + P A HPS+ A++GP + G
Sbjct: 159 TLRMPSQPPAGLPGSQP-LLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGG 217
Query: 279 DSPKCQQLAKNNLLALPR-PSALGILSNSGPPKKRHKGWSPESPSAPDGG 327
P LA L A+ P G ++ + SP S + P GG
Sbjct: 218 MRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGG 267
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 32.7 bits (73), Expect = 0.70
Identities = 36/130 (27%), Positives = 47/130 (36%), Gaps = 17/130 (13%)
Query: 225 SSSLFPALESTAA----FPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDS 280
S+ P + +TAA FP P P +G P + L+ A G A G
Sbjct: 174 SADKCPKVSATAAELAPFPRGPPPD---GCALGTSSGVPVPGYFRLSQAYGTAKGYGSGG 230
Query: 281 PKCQQLAKNNLLALPR------PSALGILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGN 334
QQL A P P AL SG K + +SP P C GGG+
Sbjct: 231 GGAQQLGAGPFPAQPPGRGFDLPPALA----SGSADAARKERALDSPPPPTLACGSGGGS 286
Query: 335 RAKYESAGMS 344
+ E+ S
Sbjct: 287 QGDEEAHASS 296
>gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens]
Length = 683
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 293 ALPRPSALGILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLV 352
ALP + +G+ + G +++ P + G P+GGG A+ E + + P+ +
Sbjct: 17 ALPAAARMGLEAPRGGRRRQPGQQRPGPGAGAPAGRPEGGGPWARTEGSSLHSEPERAGL 76
Query: 353 GPASVT 358
GPA T
Sbjct: 77 GPAPGT 82
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 32.0 bits (71), Expect = 1.2
Identities = 43/171 (25%), Positives = 54/171 (31%), Gaps = 7/171 (4%)
Query: 236 AAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMG-PAVFNGKDSPKCQQLAKNNLLAL 294
AA P P G GA PA+ PS + P+ +P + LA
Sbjct: 1176 AATPPSPKGGLATPSPKGAPTT-PAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLAT 1234
Query: 295 PRPSALGILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGP 354
P P + PP + P +P P G P G++ P G P
Sbjct: 1235 PSPKGAPTTPAATPPSPKG---GPATP--PPKGAPTPPAATPPSLKGGLATPPHKGAPNP 1289
Query: 355 ASVTFPVVASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCGNLNDVVVSP 405
A VT P G S P A P KG P G V+P
Sbjct: 1290 AVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTP 1340
Score = 29.3 bits (64), Expect = 7.8
Identities = 37/140 (26%), Positives = 47/140 (33%), Gaps = 6/140 (4%)
Query: 230 PALESTAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKN 289
PA S P P P G P P+ AA P+ G +P + A
Sbjct: 1094 PATPSPKGAPMPPA--ATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKG-APT 1150
Query: 290 NLLALPRPSALGILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQV 349
A P PS G L+ PP K +P +P GG A A P+
Sbjct: 1151 TPAATP-PSPKGGLAT--PPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1207
Query: 350 GLVGPASVTFPVVASGEPVS 369
GL P+ P + P S
Sbjct: 1208 GLATPSPKGAPTTPAATPPS 1227
>gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens]
Length = 517
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 45 EQQLAALEGGSRVDNEEEEEEGEGGLETN-GPPNP 78
+++ A GGS + EEEEEEG GG E G P+P
Sbjct: 424 DEKKAGPLGGSSYEEEEEEEEGGGGGERKVGGPHP 458
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
Length = 1343
Score = 31.6 bits (70), Expect = 1.6
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 248 PSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLAL----PRPSALGIL 303
P I +G Q+ PA P + G G P Q+ L PRPS+ +L
Sbjct: 1035 PQITIGPQR--PAPSGPGGGSGGGSGGGGGGQPPPLQRGKSQQLTVSAAQKPRPSSGNLL 1092
Query: 304 SNS----GPPKKRHKGWSPESPSAPDGGCPQGGGNRAK 337
+ GP + R + S E GG GGG K
Sbjct: 1093 QSPEPSYGPARPRQQSLSKEGSIGGSGGSGGGGGGGLK 1130
>gi|47271475 SPOC domain containing 1 [Homo sapiens]
Length = 1216
Score = 31.6 bits (70), Expect = 1.6
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 289 NNLLALPRPSALGILSNSG----PPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMS 344
+NLL++ P + L + G PP + G P P GC G + G
Sbjct: 235 DNLLSVGDPPQVADLESLGGPCRPPSPKDTGSGPGEPGGSGAGCASGTEKFGYLPATGDG 294
Query: 345 CVPQVGL-VGPASVTFPVVASGEPVS 369
PQ G GP V FPV + GE +S
Sbjct: 295 --PQPGSPCGP--VGFPVPSGGESLS 316
>gi|156938336 class II transactivator [Homo sapiens]
Length = 1130
Score = 31.2 bits (69), Expect = 2.0
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 244 PGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSA 299
P P+++ G+ GP SD +L PA+FN + + +L K + + +P S+
Sbjct: 160 PAEPPTVVTGSLLVGPVSDCSTLPCLPLPALFNQEPASGQMRLEKTDQIPMPFSSS 215
>gi|34808710 solute carrier family 19 member 1 [Homo sapiens]
Length = 591
Score = 31.2 bits (69), Expect = 2.0
Identities = 44/179 (24%), Positives = 65/179 (36%), Gaps = 20/179 (11%)
Query: 177 LKLTTQPKKQKHLKYYLVRNA---QGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALE 233
L L + + Q + Y+L+ + G + G C +G RQ PA S+
Sbjct: 424 LGLPVRKQFQLYSVYFLILSIIYFLGAMLDGLRHCQRGHH--PRQPPAQGLRSAAEEKAA 481
Query: 234 STAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLA 293
+ + + G P+ Q+ P S SL A +GPA + S L
Sbjct: 482 QALSVQDKGLGGLQPA------QSPPLSPEDSLGA-VGPASLEQRQSDPY-------LAQ 527
Query: 294 LPRPSALGILSNSGPPKKRHKGWSPES-PSAPDGGCPQGGGNRAKYESAGMSCVPQVGL 351
P P A LS P + S P A D CPQ + G+ C+P G+
Sbjct: 528 APAPQAAEFLSPVTTPSPCTLCSAQASGPEAADETCPQLAVHPPGVSKLGLQCLPSDGV 586
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 31.2 bits (69), Expect = 2.0
Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 13/202 (6%)
Query: 240 SEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSA 299
+EP N S+ P + L A G Q L KNNL P P +
Sbjct: 4565 TEPAITANFSLFAPFGSGCPVNGQSQLRGAFGSGALPTGPDYYSQLLTKNNLSNPPTPPS 4624
Query: 300 LGILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESA--GMSCVPQVGLVG---- 353
L + PP + K + +PS G P+ + E A S V + L+
Sbjct: 4625 --SLPPTPPPSVQQKMVNGVTPSEELGEHPKDAASARDSERALRDTSEVKSLDLLAALPT 4682
Query: 354 -PASVTFPV-VASGEPVSVPDNLLKICKAKPVIFKGHGNFPYLCG---NLNDVVVSPLLY 408
P + T V + S E PD+++ + ++ + FP+L D +SP++
Sbjct: 4683 PPHNQTEDVRMESDEDSDSPDSIVPASSPESILGEEAPRFPHLGSGRWEQEDRALSPVIP 4742
Query: 409 TCYQNSQSVSRAYEQYGASAIQ 430
+ S V + YGA ++
Sbjct: 4743 LIPRASIPVFPDTKPYGALGLE 4764
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 31.2 bits (69), Expect = 2.0
Identities = 41/156 (26%), Positives = 57/156 (36%), Gaps = 24/156 (15%)
Query: 216 SRQIPASTCSSSLFPALESTAAFPSEPVPGT----NPSILMGAQQAGPASDHPSLNAAMG 271
+R++ S S+L A S+ A PS P P T PS + P + P+ + A
Sbjct: 2158 ARRLQESPSLSALSEAQPSSPARPSAPKPSTPKSAEPSATTPSDAPQPPAPQPAQDKAPE 2217
Query: 272 PA---VFNGKDSPKCQQLAKNNLLALPRPSALGILSNSGPPKKRHKG-WSPES------- 320
P V K +P Q L L P + L SG + +G +P S
Sbjct: 2218 PRPEPVRASKPAPPPQALQTLALPLTPYAQIIQSLQLSGHAQGPSQGPAAPPSEPKPHAA 2277
Query: 321 ---------PSAPDGGCPQGGGNRAKYESAGMSCVP 347
P AP+ P GG E A + VP
Sbjct: 2278 VFARVASPPPGAPEKRVPSAGGPPVLAEKARVPTVP 2313
>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
Length = 845
Score = 31.2 bits (69), Expect = 2.0
Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 8/154 (5%)
Query: 220 PASTCSSSLFPALESTAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKD 279
P+ + P +T+ P P P PS GP HP + P +
Sbjct: 463 PSPEAGGTTGPWTSTTSEVPRPPEPSQGPSTTSSGGGTGP---HPPSGTTLRPPTSSTPG 519
Query: 280 SPKCQQLAKNNLLALP-RPSALGILSNSGPPKKRHKGWS-PESPSAPDGG---CPQGGGN 334
P + + ++ A P +A + P G S P+ P GG P+ G +
Sbjct: 520 GPPGAENSTSHQPATPGGDTAQTPKPGTSQPMPPGVGTSTSHQPATPSGGTAQTPEPGTS 579
Query: 335 RAKYESAGMSCVPQVGLVGPASVTFPVVASGEPV 368
+ S G S Q G + P + +P+
Sbjct: 580 QPMPPSMGTSTSHQPATPGGGTAQTPEAGTSQPM 613
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 30.8 bits (68), Expect = 2.7
Identities = 35/133 (26%), Positives = 47/133 (35%), Gaps = 26/133 (19%)
Query: 238 FPSEPVPGTNPSILMGAQQAGPASDHPSL-NAAMGPAVFNGKDSPKCQQLAKNNLLALPR 296
FP P P S + QQA S P + +GP SP+ L+ P
Sbjct: 714 FPPPPPPPQVTSAIATLQQAAAMSFCPQVARPLVGPLALG---SPR--------LVRRPP 762
Query: 297 PSALGILSNSGPPKKRHKGWSPESPSAPDGGCPQGGGNRAKYESAGMSCVPQVGLVGPAS 356
P ++ GPP +P SP AP P GG +P L GPA
Sbjct: 763 PGPAPAAASPGPPPPASPPGAPASPRAPRTS-PYGG-------------LPAAPLAGPAL 808
Query: 357 VTFPVVASGEPVS 369
+ + P+S
Sbjct: 809 PARRLSRASRPLS 821
>gi|169213985 PREDICTED: similar to hCG2036794 [Homo sapiens]
Length = 518
Score = 30.8 bits (68), Expect = 2.7
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 234 STAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLA 293
ST+ +P PVP + + + P P AA+ P DSPK ++
Sbjct: 281 STSLYPETPVPFKDDATALNELSLNPK---PGTPAAIQP------DSPKLPTSDSPGMVE 331
Query: 294 LPRPSALGILSNSGPPKKRHKGWSPESPSAP 324
L P G ++ PP P P P
Sbjct: 332 LKAPQNSGPKESNAPPPSARIAGPPALPGRP 362
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 30.8 bits (68), Expect = 2.7
Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 14/128 (10%)
Query: 258 GPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLALPRPSALGILSNSGPPKKRHKGWS 317
GPA + + A P GK S K Q K + + +P G + GPP K
Sbjct: 479 GPAGERGPIGPAGPPGERGGKGS-KGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEGL 537
Query: 318 PESPSAPDG--------GCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASG 365
P P P G G P G R G+ +P G GP+ P+
Sbjct: 538 P-GPQGPPGFQGLQGTVGEPGVPGPRGLPGLPGVPGMPGPKGPPGPPGPSGAVVPLALQN 596
Query: 366 EPVSVPDN 373
EP P++
Sbjct: 597 EPTPAPED 604
>gi|24308179 CTTNBP2 N-terminal like [Homo sapiens]
Length = 639
Score = 30.8 bits (68), Expect = 2.7
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 235 TAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLAL 294
T +FP+E G+N + + GPA+ A A NG P+ Q +
Sbjct: 314 TESFPAERTHGSNIAKMTNTGLPGPAT------PAYSYAKTNGHCDPEIQTTRE------ 361
Query: 295 PRPSALGILSNSGPPKKRHKGWSPESPSAPDGGCPQG 331
+A + N PP+++ + E P +GGCP G
Sbjct: 362 --LTAGNNVENQVPPREKSVALAQEKP-VENGGCPVG 395
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 30.8 bits (68), Expect = 2.7
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 153 FSGNCVGCGKKGFCYFTEFSNH---INLKLTTQPKKQK-HLKYYLVRNAQGTLTKGPLIC 208
F G C +KG + TE+S H L L Q QK H ++L A G + K I
Sbjct: 1449 FYGPCAKTSEKGPYFLTEYSTHQLFSQLTLLQQELFQKCHPVHFLNSRALGVMDKSTAIP 1508
Query: 209 WKGSEFRSRQIPASTCS 225
S S + A TCS
Sbjct: 1509 KASS---SESLSAKTCS 1522
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,474,165
Number of Sequences: 37866
Number of extensions: 1217268
Number of successful extensions: 3784
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 3711
Number of HSP's gapped (non-prelim): 118
length of query: 457
length of database: 18,247,518
effective HSP length: 106
effective length of query: 351
effective length of database: 14,233,722
effective search space: 4996036422
effective search space used: 4996036422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.