Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 228480284
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine)
tRNA synthase isoform 3 [Homo sapiens]
(500 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN... 1008 0.0
gi|228480280 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN... 923 0.0
gi|228480282 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN... 816 0.0
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ... 69 8e-12
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ... 69 8e-12
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ... 69 8e-12
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 57 4e-08
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 57 4e-08
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 56 9e-08
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 54 3e-07
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 54 3e-07
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 54 4e-07
gi|149588643 zinc finger protein 283 [Homo sapiens] 51 2e-06
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [... 47 4e-05
gi|209364547 suppressor of S. cerevisiae gcr2 isoform 2 [Homo sa... 47 4e-05
gi|193794843 BEN domain containing 2 [Homo sapiens] 44 3e-04
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 41 0.002
gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens] 41 0.002
gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo... 41 0.003
gi|239754969 PREDICTED: hypothetical protein [Homo sapiens] 38 0.019
gi|239749517 PREDICTED: hypothetical protein [Homo sapiens] 38 0.019
gi|239743656 PREDICTED: hypothetical protein XP_002342923 [Homo ... 38 0.019
gi|194306647 protein phosphatase 1, regulatory subunit 14D isofo... 36 0.093
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s... 35 0.16
gi|22749515 coiled-coil domain containing 110 isoform a [Homo sa... 35 0.16
gi|238908517 colony stimulating factor 2 receptor alpha chain is... 35 0.21
gi|40789270 zinc finger protein 573 [Homo sapiens] 34 0.27
gi|46488935 interferon alpha/beta receptor 2 isoform b precursor... 32 1.0
gi|19923129 interferon alpha/beta receptor 2 isoform b precursor... 32 1.0
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 32 1.8
>gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
synthase isoform 3 [Homo sapiens]
Length = 500
Score = 1008 bits (2607), Expect = 0.0
Identities = 500/500 (100%), Positives = 500/500 (100%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHPGKCPENGWDESTLELFLHELAIM 60
MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHPGKCPENGWDESTLELFLHELAIM
Sbjct: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHPGKCPENGWDESTLELFLHELAIM 60
Query: 61 DSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSL 120
DSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSL
Sbjct: 61 DSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSL 120
Query: 121 VLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMIT 180
VLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMIT
Sbjct: 121 VLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMIT 180
Query: 181 AGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVI 240
AGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVI
Sbjct: 181 AGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVI 240
Query: 241 CANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDS 300
CANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDS
Sbjct: 241 CANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDS 300
Query: 301 FIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNE 360
FIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNE
Sbjct: 301 FIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNE 360
Query: 361 RLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRG 420
RLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRG
Sbjct: 361 RLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRG 420
Query: 421 FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVDI 480
FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVDI
Sbjct: 421 FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVDI 480
Query: 481 EEMALKLDNVLLDTYQDASS 500
EEMALKLDNVLLDTYQDASS
Sbjct: 481 EEMALKLDNVLLDTYQDASS 500
>gi|228480280 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
synthase isoform 1 [Homo sapiens]
Length = 501
Score = 923 bits (2385), Expect = 0.0
Identities = 463/463 (100%), Positives = 463/463 (100%)
Query: 38 GKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRS 97
GKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRS
Sbjct: 39 GKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRS 98
Query: 98 GDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHK 157
GDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHK
Sbjct: 99 GDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHK 158
Query: 158 RPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCIL 217
RPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCIL
Sbjct: 159 RPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCIL 218
Query: 218 CIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAF 277
CIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAF
Sbjct: 219 CIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAF 278
Query: 278 VQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLL 337
VQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLL
Sbjct: 279 VQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLL 338
Query: 338 KERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTR 397
KERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTR
Sbjct: 339 KERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTR 398
Query: 398 QVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCL 457
QVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCL
Sbjct: 399 QVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCL 458
Query: 458 KAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS 500
KAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS
Sbjct: 459 KAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS 501
>gi|228480282 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
synthase isoform 2 [Homo sapiens]
Length = 422
Score = 816 bits (2109), Expect = 0.0
Identities = 412/412 (100%), Positives = 412/412 (100%)
Query: 89 RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLT 148
RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLT
Sbjct: 11 RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLT 70
Query: 149 LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV 208
LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV
Sbjct: 71 LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKV 130
Query: 209 QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG 268
QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG
Sbjct: 131 QELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG 190
Query: 269 ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSL 328
ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSL
Sbjct: 191 ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSL 250
Query: 329 GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVT 388
GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVT
Sbjct: 251 GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVT 310
Query: 389 QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL 448
QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL
Sbjct: 311 QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL 370
Query: 449 FIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS 500
FIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS
Sbjct: 371 FIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQDASS 422
>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 69.3 bits (168), Expect = 8e-12
Identities = 29/35 (82%), Positives = 30/35 (85%), Gaps = 3/35 (8%)
Query: 3 CDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHP 37
CDDLGSLQPPPPGF+ CLSLP SWDYR PPPHP
Sbjct: 140 CDDLGSLQPPPPGFS---CLSLPGSWDYRHPPPHP 171
>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 69.3 bits (168), Expect = 8e-12
Identities = 29/35 (82%), Positives = 30/35 (85%), Gaps = 3/35 (8%)
Query: 3 CDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHP 37
CDDLGSLQPPPPGF+ CLSLP SWDYR PPPHP
Sbjct: 140 CDDLGSLQPPPPGFS---CLSLPGSWDYRHPPPHP 171
>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 69.3 bits (168), Expect = 8e-12
Identities = 29/35 (82%), Positives = 30/35 (85%), Gaps = 3/35 (8%)
Query: 3 CDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHP 37
CDDLGSLQPPPPGF+ CLSLP SWDYR PPPHP
Sbjct: 140 CDDLGSLQPPPPGFS---CLSLPGSWDYRHPPPHP 171
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 57.0 bits (136), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHP 37
++C DL SLQP PPGF F+CLSLPSSWDY P P
Sbjct: 311 VRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRP 347
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 57.0 bits (136), Expect = 4e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHP 37
++C DL SLQP PPGF F+CLSLPSSWDY P P
Sbjct: 311 VRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRP 347
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 55.8 bits (133), Expect = 9e-08
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPH 36
+Q +LGSLQP PPGF F+CL LPSSWDYR PP+
Sbjct: 366 VQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPY 401
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 54.3 bits (129), Expect = 3e-07
Identities = 23/37 (62%), Positives = 26/37 (70%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHP 37
++C DL SLQP PPGF F+CLSLPSSW Y P P
Sbjct: 311 VRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRP 347
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 54.3 bits (129), Expect = 3e-07
Identities = 23/37 (62%), Positives = 26/37 (70%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHP 37
++C DL SLQP PPGF F+CLSLPSSW Y P P
Sbjct: 311 VRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRP 347
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 53.5 bits (127), Expect = 4e-07
Identities = 26/43 (60%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHPGKCPEN 43
MQ DL SLQPPPPGF F+ LSLP+SW+YR P CP N
Sbjct: 998 MQWCDLSSLQPPPPGFKRFSHLSLPNSWNYRHLP----SCPTN 1036
>gi|149588643 zinc finger protein 283 [Homo sapiens]
Length = 679
Score = 51.2 bits (121), Expect = 2e-06
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDY 30
+Q DLGSLQ PPPGFT F+CLSL SSWDY
Sbjct: 11 VQWCDLGSLQAPPPGFTLFSCLSLLSSWDY 40
>gi|121583542 mitogen-activated protein kinase kinase kinase 15
[Homo sapiens]
Length = 788
Score = 47.0 bits (110), Expect = 4e-05
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDY 30
+Q DLGSLQP PP F F+CLSL SSWDY
Sbjct: 28 VQWHDLGSLQPLPPRFKRFSCLSLQSSWDY 57
>gi|209364547 suppressor of S. cerevisiae gcr2 isoform 2 [Homo
sapiens]
Length = 677
Score = 47.0 bits (110), Expect = 4e-05
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHPGK 39
+Q D G LQ PPPGFTPF CLSL S+WD PG+
Sbjct: 379 VQWRDPGLLQAPPPGFTPFICLSLLSTWDNSSLAMSPGE 417
>gi|193794843 BEN domain containing 2 [Homo sapiens]
Length = 799
Score = 43.9 bits (102), Expect = 3e-04
Identities = 22/37 (59%), Positives = 23/37 (62%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHP 37
+Q D SLQP P G F LSLPSSWD RR PP P
Sbjct: 89 VQWHDHSSLQPQPLGLKQFFHLSLPSSWDDRRTPPCP 125
>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
Length = 825
Score = 41.2 bits (95), Expect = 0.002
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYR 31
+Q D+ SLQP F F+CLSLPS+WDYR
Sbjct: 786 VQWCDISSLQPLTSRFQQFSCLSLPSTWDYR 816
>gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens]
Length = 819
Score = 41.2 bits (95), Expect = 0.002
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYR 31
+Q D+ SLQP F F+CLSLPS+WDYR
Sbjct: 780 VQWCDISSLQPLTSRFQQFSCLSLPSTWDYR 810
>gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo
sapiens]
Length = 165
Score = 40.8 bits (94), Expect = 0.003
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLP 25
+Q DLGSLQPPPPGF CLSLP
Sbjct: 37 VQWRDLGSLQPPPPGFKQVFCLSLP 61
>gi|239754969 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 38.1 bits (87), Expect = 0.019
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 13 PPGFTPFACLSLPSSWDYR 31
PP F F+CLSLPSSWDYR
Sbjct: 154 PPRFKRFSCLSLPSSWDYR 172
>gi|239749517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 38.1 bits (87), Expect = 0.019
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 13 PPGFTPFACLSLPSSWDYR 31
PP F F+CLSLPSSWDYR
Sbjct: 154 PPRFKRFSCLSLPSSWDYR 172
>gi|239743656 PREDICTED: hypothetical protein XP_002342923 [Homo
sapiens]
Length = 184
Score = 38.1 bits (87), Expect = 0.019
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 13 PPGFTPFACLSLPSSWDYR 31
PP F F+CLSLPSSWDYR
Sbjct: 154 PPRFKRFSCLSLPSSWDYR 172
>gi|194306647 protein phosphatase 1, regulatory subunit 14D isoform
2 [Homo sapiens]
Length = 200
Score = 35.8 bits (81), Expect = 0.093
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 8 SLQPPPPGFTPFACLSLPSSWDY 30
SLQ PPGF F+CLS SSWDY
Sbjct: 101 SLQLLPPGFNRFSCLSSWSSWDY 123
>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
sapiens]
Length = 796
Score = 35.0 bits (79), Expect = 0.16
Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 7/162 (4%)
Query: 335 KLLKERKEMFSYLS-NQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSM 393
+LLKE+ + + L +Q++ + ERL T +L ++T+ + + T L
Sbjct: 557 QLLKEKSSLGNELKESQLEIIQLKEKERLAKTEQE--TLLQIIETVKDEKLNLETTLQES 614
Query: 394 LFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRL 453
RQ+ + + + Q+ + F + + + Y N+ S IG + + + +
Sbjct: 615 TAARQIMEREIENIQTYQSTAEENFLQEIKNAKSEASIYKNSLSEIGKECEMLSKMVMET 674
Query: 454 DRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTY 495
+ +++E K S +N + L D +LL+ Y
Sbjct: 675 KTDNQILKEELKKHSQENIKFENSIS----RLTEDKILLENY 712
>gi|22749515 coiled-coil domain containing 110 isoform a [Homo
sapiens]
Length = 833
Score = 35.0 bits (79), Expect = 0.16
Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 7/162 (4%)
Query: 335 KLLKERKEMFSYLS-NQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSM 393
+LLKE+ + + L +Q++ + ERL T +L ++T+ + + T L
Sbjct: 594 QLLKEKSSLGNELKESQLEIIQLKEKERLAKTEQE--TLLQIIETVKDEKLNLETTLQES 651
Query: 394 LFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRL 453
RQ+ + + + Q+ + F + + + Y N+ S IG + + + +
Sbjct: 652 TAARQIMEREIENIQTYQSTAEENFLQEIKNAKSEASIYKNSLSEIGKECEMLSKMVMET 711
Query: 454 DRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTY 495
+ +++E K S +N + L D +LL+ Y
Sbjct: 712 KTDNQILKEELKKHSQENIKFENSIS----RLTEDKILLENY 749
>gi|238908517 colony stimulating factor 2 receptor alpha chain
isoform f precursor [Homo sapiens]
Length = 434
Score = 34.7 bits (78), Expect = 0.21
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWD 29
+Q +LGSLQPP P F+CL LP S D
Sbjct: 325 VQWHNLGSLQPPSPRLKRFSCLRLPGSDD 353
>gi|40789270 zinc finger protein 573 [Homo sapiens]
Length = 607
Score = 34.3 bits (77), Expect = 0.27
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 1 MQCDDLGSLQPPPPGFTPFACLSL 24
+Q DL SLQPPPP F F+C SL
Sbjct: 11 VQWPDLSSLQPPPPRFKQFSCHSL 34
>gi|46488935 interferon alpha/beta receptor 2 isoform b precursor
[Homo sapiens]
Length = 331
Score = 32.3 bits (72), Expect = 1.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 8 SLQPPPPGFTPFACLSLPSSWDYRR 32
+LQ P +CLS PSSWDY+R
Sbjct: 300 ALQSETPELKQSSCLSFPSSWDYKR 324
>gi|19923129 interferon alpha/beta receptor 2 isoform b precursor
[Homo sapiens]
Length = 331
Score = 32.3 bits (72), Expect = 1.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 8 SLQPPPPGFTPFACLSLPSSWDYRR 32
+LQ P +CLS PSSWDY+R
Sbjct: 300 ALQSETPELKQSSCLSFPSSWDYKR 324
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 31.6 bits (70), Expect = 1.8
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 7 GSLQPPPPGFTPFACLSLPSSWDYRRPPPHP 37
G L PPG P A S P W+ RPPP P
Sbjct: 211 GGLTSAPPGLPPLA--SPPPFWELPRPPPPP 239
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,384,680
Number of Sequences: 37866
Number of extensions: 887925
Number of successful extensions: 2774
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2735
Number of HSP's gapped (non-prelim): 42
length of query: 500
length of database: 18,247,518
effective HSP length: 106
effective length of query: 394
effective length of database: 14,233,722
effective search space: 5608086468
effective search space used: 5608086468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.