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Search of human proteins with 226532848
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226532848 zinc finger, AN1-type domain 2A [Homo sapiens]
(145 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226532848 zinc finger, AN1-type domain 2A [Homo sapiens] 329 4e-91
gi|20270357 zinc finger, AN1-type domain 2B [Homo sapiens] 210 3e-55
gi|13375985 zinc finger, AN1-type domain 1 [Homo sapiens] 77 5e-15
gi|109150431 ring finger protein 31 [Homo sapiens] 33 0.084
gi|40807465 zinc finger protein 341 [Homo sapiens] 33 0.084
gi|30520320 ring finger protein 166 [Homo sapiens] 31 0.42
gi|13430850 RB-associated KRAB repressor [Homo sapiens] 30 0.55
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H... 30 0.71
gi|19923717 deltex 3-like [Homo sapiens] 30 0.93
gi|80978934 centaurin, gamma 2 isoform 2 [Homo sapiens] 29 1.6
gi|80978930 centaurin, gamma 2 isoform 1 [Homo sapiens] 29 1.6
gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens] 29 1.6
gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens] 29 1.6
gi|116014332 zinc finger protein 195 isoform 3 [Homo sapiens] 29 1.6
gi|38045938 ring finger protein 144 [Homo sapiens] 28 2.1
gi|11345484 zinc finger, AN1-type domain 3 [Homo sapiens] 28 2.7
gi|9558731 replication protein A4, 34kDa [Homo sapiens] 28 2.7
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 28 2.7
gi|31563503 activity-dependent neuroprotector [Homo sapiens] 28 2.7
gi|12229217 activity-dependent neuroprotector [Homo sapiens] 28 2.7
gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens] 28 2.7
gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens] 28 2.7
gi|38045931 ring finger protein 122 [Homo sapiens] 28 2.7
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 27 4.6
gi|239754287 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239748824 PREDICTED: hypothetical protein XP_002346830 [Homo ... 27 4.6
gi|239742855 PREDICTED: hypothetical protein XP_002342663 [Homo ... 27 4.6
gi|239740869 PREDICTED: hypothetical protein XP_002344072 [Homo ... 27 4.6
gi|239740804 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239740753 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
>gi|226532848 zinc finger, AN1-type domain 2A [Homo sapiens]
Length = 145
Score = 329 bits (844), Expect = 4e-91
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MEFPDLGKHCSEKTCKQLDFLPVKCDACKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLC 60
MEFPDLGKHCSEKTCKQLDFLPVKCDACKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLC
Sbjct: 1 MEFPDLGKHCSEKTCKQLDFLPVKCDACKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLC 60
Query: 61 NTPIPVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQMVCAQCHG 120
NTPIPVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQMVCAQCHG
Sbjct: 61 NTPIPVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQMVCAQCHG 120
Query: 121 NFCIQHRHPLDHSCRHGSRPTIKAG 145
NFCIQHRHPLDHSCRHGSRPTIKAG
Sbjct: 121 NFCIQHRHPLDHSCRHGSRPTIKAG 145
>gi|20270357 zinc finger, AN1-type domain 2B [Homo sapiens]
Length = 257
Score = 210 bits (535), Expect = 3e-55
Identities = 86/145 (59%), Positives = 109/145 (75%)
Query: 1 MEFPDLGKHCSEKTCKQLDFLPVKCDACKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLC 60
MEFPDLG HCSE +C++LDFLP+KCDAC FC DH YA H C A+QKD+ VPVCPLC
Sbjct: 1 MEFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCGSAYQKDIQVPVCPLC 60
Query: 61 NTPIPVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQMVCAQCHG 120
N P+PV +G+ PD VG+HIDRDC S P ++K KIFT +C + GC+++EM+++ C +C
Sbjct: 61 NVPVPVARGEPPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERAGCRQREMMKLTCERCSR 120
Query: 121 NFCIQHRHPLDHSCRHGSRPTIKAG 145
NFCI+HRHPLDH C PT +AG
Sbjct: 121 NFCIKHRHPLDHDCSGEGHPTSRAG 145
>gi|13375985 zinc finger, AN1-type domain 1 [Homo sapiens]
Length = 268
Score = 77.0 bits (188), Expect = 5e-15
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 36/130 (27%)
Query: 5 DLGKHCSEKTCKQLDFLPVKCDACKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLCNTPI 64
D+G+HC + C+Q DFLP CD C FC +H +H CP
Sbjct: 5 DIGQHCQVEHCRQRDFLPFVCDDCSGIFCLEHRSRESHGCPEV----------------- 47
Query: 65 PVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQMVCAQCHGNFCI 124
V+ + + K ++ +Y CS + C ++E++ ++C C NFC+
Sbjct: 48 ---------TVINERL----------KTDQHTSYPCSFKDCAERELVAVICPYCEKNFCL 88
Query: 125 QHRHPLDHSC 134
+HRH DH C
Sbjct: 89 RHRHQSDHEC 98
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 33.1 bits (74), Expect = 0.084
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 24 KCDACKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLCNTPIPVKKGQIP------DVVVG 77
+C C F + HF A +K + VCP C P Q+ D+ +
Sbjct: 718 ECTICPDCF-RQHFTIALK------EKHITDMVCPACGRPDLTDDTQLLSYFSTLDIQLR 770
Query: 78 DHIDRDCDSHPGKKKEK---------IFTYRCSKEGCKKKEMLQMVCAQCHGNFCIQ 125
+ ++ D + KK + ++ +CS ++E L+ C QCH FC++
Sbjct: 771 ESLEPDAYALFHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVR 827
>gi|40807465 zinc finger protein 341 [Homo sapiens]
Length = 847
Score = 33.1 bits (74), Expect = 0.084
Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 42/148 (28%)
Query: 24 KCDACKQDFCKDHF------------PYAAHKCPFAFQKD--------VHVPV----CPL 59
KC CK+ F ++H+ PY C AF + +H P CP
Sbjct: 588 KCQVCKKFFRREHYLKLHAHIHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFKKYKCPF 647
Query: 60 CNTPIPVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQ------- 112
K+ PD + + SH G K K CSK ++ + +
Sbjct: 648 STHTGCSKEFNRPDKLKAHIL-----SHSGMKLHKCAL--CSKSFSRRAHLAEHQRAHTG 700
Query: 113 ---MVCAQCHGNFCIQHRHPLDHSCRHG 137
CA C F +H++ DH CR G
Sbjct: 701 NYKFRCAGCAKGFS-RHKYLKDHRCRLG 727
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 30.8 bits (68), Expect = 0.42
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 27/111 (24%)
Query: 15 CKQLDFLPVKCDACKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLCNTPIPVKKGQIPDV 74
C ++ PV +C FC + C V P+CPLC P KK V
Sbjct: 36 CLEVYHRPVAIGSCGHTFCGE----CLQPC-----LQVPSPLCPLCRLPFDPKK-----V 81
Query: 75 VVGDHIDRDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQMVCAQCHGNFCIQ 125
H+++ S Y+ GC KK L + + H + C++
Sbjct: 82 DKATHVEKQLSS-----------YKAPCRGCNKKVTLAKM--RVHISSCLK 119
>gi|13430850 RB-associated KRAB repressor [Homo sapiens]
Length = 714
Score = 30.4 bits (67), Expect = 0.55
Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 28/135 (20%)
Query: 17 QLDFLPVKCDACKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLCNTPIPVKKGQIPDVVV 76
Q++ P +C C + FCK + H+ +K VC + +KG +
Sbjct: 255 QMEMKPFECSECGKSFCKKS-KFIIHQRAHTGEKPYECNVCGKSFS----QKGTLTV--- 306
Query: 77 GDHIDRDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQMV----------CAQCHGNFCIQH 126
H + P K E C K C+K + Q + C++C FC Q
Sbjct: 307 --HRRSHLEEKPYKCNE------CGKTFCQKLHLTQHLRTHSGEKPYECSECGKTFC-QK 357
Query: 127 RHPLDHSCRH-GSRP 140
H H H G RP
Sbjct: 358 THLTLHQRNHSGERP 372
>gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [Homo
sapiens]
Length = 802
Score = 30.0 bits (66), Expect = 0.71
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 81 DRDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQMVCAQCHGNFCIQHRH-PLDH------- 132
D +CD G ++K + C G K + +Q++C +C+ + I + PLD
Sbjct: 328 DPECDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYW 387
Query: 133 ---SCRHGSRPTIKAG 145
SC+ S +KAG
Sbjct: 388 YCPSCKTDSSEVVKAG 403
>gi|19923717 deltex 3-like [Homo sapiens]
Length = 740
Score = 29.6 bits (65), Expect = 0.93
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 28 CKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLCNTPIPVKKGQIPDVVVGDHIDRDCDSH 87
CK +FC P + + P+CP C T ++KG P+ + + R DS
Sbjct: 577 CKHEFC----------APCINKAMSYKPICPTCQTSYGIQKGNQPEGSMVFTVSR--DSL 624
Query: 88 PG 89
PG
Sbjct: 625 PG 626
>gi|80978934 centaurin, gamma 2 isoform 2 [Homo sapiens]
Length = 804
Score = 28.9 bits (63), Expect = 1.6
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 19/68 (27%)
Query: 45 PFAFQKDVHVPVCPLCNTPIPVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRCSKEG 104
P QK++ + V P NTP PV+K K++ +FT R +
Sbjct: 286 PSTSQKELRIDVPPTANTPTPVRK-------------------QSKRRSNLFTSRKGSDP 326
Query: 105 CKKKEMLQ 112
K+K+ L+
Sbjct: 327 DKEKKGLE 334
>gi|80978930 centaurin, gamma 2 isoform 1 [Homo sapiens]
Length = 857
Score = 28.9 bits (63), Expect = 1.6
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 19/68 (27%)
Query: 45 PFAFQKDVHVPVCPLCNTPIPVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRCSKEG 104
P QK++ + V P NTP PV+K K++ +FT R +
Sbjct: 286 PSTSQKELRIDVPPTANTPTPVRK-------------------QSKRRSNLFTSRKGSDP 326
Query: 105 CKKKEMLQ 112
K+K+ L+
Sbjct: 327 DKEKKGLE 334
>gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]
Length = 606
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 16/68 (23%)
Query: 1 MEFPDLGKHCSEKTCKQLDFLPVKCDACKQDFCKD------------HFPYAAHKCPFAF 48
M F D+ KH T ++ P KCD C ++F + PY KC AF
Sbjct: 537 MWFSDITKHKKTHTGEK----PYKCDECGKNFTQSSNLIVHKRIHTGEKPYKCEKCGKAF 592
Query: 49 QKDVHVPV 56
+ H+ V
Sbjct: 593 TQFSHLTV 600
>gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]
Length = 629
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 16/68 (23%)
Query: 1 MEFPDLGKHCSEKTCKQLDFLPVKCDACKQDFCKD------------HFPYAAHKCPFAF 48
M F D+ KH T ++ P KCD C ++F + PY KC AF
Sbjct: 560 MWFSDITKHKKTHTGEK----PYKCDECGKNFTQSSNLIVHKRIHTGEKPYKCEKCGKAF 615
Query: 49 QKDVHVPV 56
+ H+ V
Sbjct: 616 TQFSHLTV 623
>gi|116014332 zinc finger protein 195 isoform 3 [Homo sapiens]
Length = 557
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 16/68 (23%)
Query: 1 MEFPDLGKHCSEKTCKQLDFLPVKCDACKQDFCKD------------HFPYAAHKCPFAF 48
M F D+ KH T ++ P KCD C ++F + PY KC AF
Sbjct: 488 MWFSDITKHKKTHTGEK----PYKCDECGKNFTQSSNLIVHKRIHTGEKPYKCEKCGKAF 543
Query: 49 QKDVHVPV 56
+ H+ V
Sbjct: 544 TQFSHLTV 551
>gi|38045938 ring finger protein 144 [Homo sapiens]
Length = 292
Score = 28.5 bits (62), Expect = 2.1
Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 22/102 (21%)
Query: 22 PVKCDACKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLCNTPIPVKKGQIPDVVVGDHID 81
PV+C AC+ +FC C ++ P PI G+
Sbjct: 132 PVQCKACRMEFCS--------TCKASWHPGQGCPE----TMPITFLPGE-----TSAAFK 174
Query: 82 RDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQMVCAQCHGNFC 123
+ D P K+ K Y EGC QM+C C FC
Sbjct: 175 MEEDDAPIKRCPKCKVYIERDEGC-----AQMMCKNCKHAFC 211
>gi|11345484 zinc finger, AN1-type domain 3 [Homo sapiens]
Length = 227
Score = 28.1 bits (61), Expect = 2.7
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 61 NTPIPVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRCSKEGCKKKEMLQMVCAQCHG 120
N PVK+ ++ + + +R ++ K+K + ++C K E++Q C
Sbjct: 126 NEASPVKRPRLLE-----NTERSEETSRSKQKSRRRCFQCQT----KLELVQQELGSCRC 176
Query: 121 N--FCIQHRHPLDHSC 134
FC+ HR P H C
Sbjct: 177 GYVFCMLHRLPEQHDC 192
>gi|9558731 replication protein A4, 34kDa [Homo sapiens]
Length = 261
Score = 28.1 bits (61), Expect = 2.7
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 26 DACKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLCNTPIPVKKGQIPDVVVGDHI 80
D ++F +D H+CP K +H LC+ + K I + V HI
Sbjct: 194 DESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAIDYLTVEGHI 248
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 28.1 bits (61), Expect = 2.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 41 AHKCPFAFQKDVHVPVCPLCNTPIPVKKGQIP 72
A +CP P CP C +P+P ++ +P
Sbjct: 344 APQCPSPSPPARAAPPCPPCQSPVPQRRSPVP 375
>gi|31563503 activity-dependent neuroprotector [Homo sapiens]
Length = 1102
Score = 28.1 bits (61), Expect = 2.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 48 FQKDVHVPVCPLCNTPIPVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRC 100
++KDV +CPLC + KG I D + +R EK TY+C
Sbjct: 615 YKKDVGKTLCPLC---FSILKGPISDALAHHLRERHQVIQTVHPVEKKLTYKC 664
>gi|12229217 activity-dependent neuroprotector [Homo sapiens]
Length = 1102
Score = 28.1 bits (61), Expect = 2.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 48 FQKDVHVPVCPLCNTPIPVKKGQIPDVVVGDHIDRDCDSHPGKKKEKIFTYRC 100
++KDV +CPLC + KG I D + +R EK TY+C
Sbjct: 615 YKKDVGKTLCPLC---FSILKGPISDALAHHLRERHQVIQTVHPVEKKLTYKC 664
>gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 28.1 bits (61), Expect = 2.7
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 90 KKKEKIFTYRCSKEGCKKKEMLQMVCAQCHGNFCIQHRHPLDHSCRH 136
KKK + C K K + +C NFC HR+ H C +
Sbjct: 660 KKKTTNHCFLCGK----KTGLASSYECRCGNNFCASHRYAETHGCTY 702
>gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 28.1 bits (61), Expect = 2.7
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 90 KKKEKIFTYRCSKEGCKKKEMLQMVCAQCHGNFCIQHRHPLDHSCRH 136
KKK + C K K + +C NFC HR+ H C +
Sbjct: 660 KKKTTNHCFLCGK----KTGLASSYECRCGNNFCASHRYAETHGCTY 702
>gi|38045931 ring finger protein 122 [Homo sapiens]
Length = 155
Score = 28.1 bits (61), Expect = 2.7
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 16 KQLDFLPVKCDACKQDFCKDHFPYAAHKCPFAFQKDVHVP------VCPLCNTPI 64
K+L C C +DF K C AF + V VCP+CN PI
Sbjct: 84 KKLQLYGQTCAVCLEDF-KGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPI 137
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 27.3 bits (59), Expect = 4.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 115 CAQCHGNFCIQHRH 128
C CH FC +HRH
Sbjct: 107 CGTCHYRFCCEHRH 120
>gi|239754287 PREDICTED: hypothetical protein [Homo sapiens]
Length = 243
Score = 27.3 bits (59), Expect = 4.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 53 HVPVCPLCNTPIP-VKKGQIPDVVVGDHIDRDCD 85
H PV P CN P P +G + ++VG H+ + D
Sbjct: 62 HTPVPPPCNIPFPHAARGNV--LIVGSHVLQHLD 93
>gi|239748824 PREDICTED: hypothetical protein XP_002346830 [Homo
sapiens]
Length = 243
Score = 27.3 bits (59), Expect = 4.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 53 HVPVCPLCNTPIP-VKKGQIPDVVVGDHIDRDCD 85
H PV P CN P P +G + ++VG H+ + D
Sbjct: 62 HTPVPPPCNIPFPHAARGNV--LIVGSHVLQHLD 93
>gi|239742855 PREDICTED: hypothetical protein XP_002342663 [Homo
sapiens]
Length = 243
Score = 27.3 bits (59), Expect = 4.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 53 HVPVCPLCNTPIP-VKKGQIPDVVVGDHIDRDCD 85
H PV P CN P P +G + ++VG H+ + D
Sbjct: 62 HTPVPPPCNIPFPHAARGNV--LIVGSHVLQHLD 93
>gi|239740869 PREDICTED: hypothetical protein XP_002344072 [Homo
sapiens]
Length = 243
Score = 27.3 bits (59), Expect = 4.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 53 HVPVCPLCNTPIP-VKKGQIPDVVVGDHIDRDCD 85
H PV P CN P P +G + ++VG H+ + D
Sbjct: 62 HTPVPPPCNIPFPHAARGNV--LIVGSHVLQHLD 93
>gi|239740804 PREDICTED: hypothetical protein [Homo sapiens]
Length = 243
Score = 27.3 bits (59), Expect = 4.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 53 HVPVCPLCNTPIP-VKKGQIPDVVVGDHIDRDCD 85
H PV P CN P P +G + ++VG H+ + D
Sbjct: 62 HTPVPPPCNIPFPHAARGNV--LIVGSHVLQHLD 93
>gi|239740753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 243
Score = 27.3 bits (59), Expect = 4.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 53 HVPVCPLCNTPIP-VKKGQIPDVVVGDHIDRDCD 85
H PV P CN P P +G + ++VG H+ + D
Sbjct: 62 HTPVPPPCNIPFPHAARGNV--LIVGSHVLQHLD 93
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.495
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,220,666
Number of Sequences: 37866
Number of extensions: 349367
Number of successful extensions: 1280
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 53
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.